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Dataset results
867 results for “repositories”
Data accompanying the GitHub repository bartonlab/paper-binary-trait-inference
<p>This dataset contains data from simulations and analysis of within-host HIV-1 evolution that accompany the GitHub repository bartonlab/binary_trait. The GitHub repository contains code and data for reproducing results described in the manuscript "Inferring selection for HIV-1 escape from T cell responses using a binary trait model." See the GitHub repository for details on the interpretation and analysis of this data.</p>
AlphaTrans: A Neuro-Symbolic Compositional Approach for Repository-Level Code Translation and Validation
Open the record for dataset details and reuse information.
Extracting Enhanced Artifical Intelligence Model Metadata from Software Repositories
<p>Replication set for evaluations performed in EMSE submission "Extracting Enhanced Artifical Intelligence Model Metadata from Software Repositories" </p>
Raw data repository for the article: "Spatially resolved fluorescence of caesium lead halide perovskite supercrystals reveals quasi-atomic behavior of nanocrystals"
<p>Raw data depository for the article in Nature Communications journal: <a href="https://doi.org/10.1038/s41467-022-28486-3">DOI: 10.1038/s41467-022-28486-3</a>. Details and the file description are given in the file "Lapkin_Dataset_Info.pdf"</p>
Repository - Sharp, localized phase transitions in single neuronal cells
<p>This repository is for the journal article "Sharp, localized phase transitions in single neuronal cells" (PNAS) and provides additional data as it contains single measurement files (plots) for cell measurements on which the presented data (mean values) is based.</p>
African Digital Research Repositories: Mapping the Landscape
<p>This data set accompanies the text at doi <a href="https://doi.org/10.5281/zenodo.3732273">10.5281/zenodo.3732273</a>. // Correspondence: JH: <a href="mailto:info@africarxiv.org">info@africarxiv.org</a>, SK: <a href="mailto:sk111@soas.ac.uk">sk111@soas.ac.uk</a></p> <p><strong>Visual Map: </strong><a href="https://kumu.io/access2perspectives/african-digital-research-repositories"><strong>https://kumu.io/access2perspectives/african-digital-research-repositories</strong></a><strong> <br> Dataset: </strong><a href="https://tinyurl.com/African-Research-Repositories"><strong>https://tinyurl.com/African-Research-Repositories</strong></a><br> <strong>Archived at </strong><a href="https://info.africarxiv.org/african-digital-research-repositories/"><strong>https://info.africarxiv.org/african-digital-research-repositories/</strong></a><strong> <br> Submission form: </strong><a href="https://forms.gle/CnyGPmBxN59nWVB38"><strong>https://forms.gle/CnyGPmBxN59nWVB38</strong></a></p> <p> </p> <p><strong>Licensing</strong>: Text and Visual Map – CC-BY-SA 4.0 // Dataset – CC0 (Public Domain) // The licensing of each database is determined by the database itself</p> <p>Preprint doi: <a href="https://doi.org/10.5281/zenodo.3732273">10.5281/zenodo.3732273</a>. <br> Data set doi: <a href="http://doi.org/10.5281/zenodo.3732172">10.5281/zenodo.3732172</a> // available in different formats (pdf, xls, ods, csv)</p> <p> </p> <p><strong><a href="https://info.africarxiv.org">AfricarXiv</a> in collaboration with the <a href="https://www.internationalafricaninstitute.org">International African Institute </a>(IAI) presents an interactive map of African digital research literature repositories. This drew from IAI’s earlier work from 2016 onwards to identify and list Africa-based institutional repositories that focused on identifying repositories based in African university libraries. Our earlier resources are available at </strong><a href="https://www.internationalafricaninstitute.org/repositories"><strong>https://www.internationalafricaninstitute.org/repositories</strong></a><strong>.</strong></p> <p><strong>The interactive map extends the work of the IAI to include organizational, governmental, and international repositories. It also maps the interactions between research repositories. In this dataset, we focus on institutional repositories for scholarly works, as defined by Wikipedia contributors (March 2020).</strong><br> </p> <p><strong>Objective</strong></p> <p>The map of African digital repositories was created as a resource to be used in activities addressing the following aims:</p> <ol> <li> <p>Improving the discoverability of African research and publications </p> </li> <li> <p>Enhance the interoperability of existing and emerging African repositories</p> </li> <li> <p>Identify ways through which digital scholarly search engines can enhance the discoverability of African research</p> </li> </ol> <p>We promote the dissemination of research-based knowledge from African repositories as part of a bigger landscape that also includes online journals, research data repositories, and scholarly publishers to enhance the interconnectivity and accessibility of such repositories across and beyond the African continent and to contribute to a more granular understanding of the continent’s scholarly resources. </p> <p> </p> <p><strong>Data archiving and maintenance</strong></p> <p>The map and corresponding dataset are hosted on the AfricArXiv website under ‘Resources’ at <a href="https://info.africarxiv.org/african-digital-research-repositories/">https://info.africarxiv.org/african-digital-research-repositories/</a>. The listing is not exhaustive and therefore we encourage any repositories relevant for the African continent not listed here to the <strong>submission form at </strong><a href="https://forms.gle/CnyGPmBxN59nWVB38"><strong>https://forms.gle/CnyGPmBxN59nWVB38</strong></a>, or to notify the International African Institute (email <a href="mailto:sk111@soas.ac.uk">sk111@soas.ac.uk</a>). Both AfricArXiv and IAI will continue to maintain the list of repositories as a resource for African researchers and other stakeholders including international African studies communities.</p>
Network-Nanostructured ZIF-8 too Enable Percolation for Enhanced Gas Transport (Data Repository)
<p>Data repository </p>
Repository for "Activity-induced polar patterns of filaments gliding on a sphere"
<p>Activity-induced polar patterns of filaments gliding on a sphere (Nature Communications)</p> <p>The structure of this repository is as follows:</p> <p>1. Image.zip -- contains confocal images and equirectangular projections </p> <ul> <li> <p>Confocal_Stacks </p> </li> </ul> <p> contains confocal stacks of Movie S1-S8</p> <ul> <li> <p>Epifluorescence_Projections</p> </li> </ul> <p> contains epifluorescence projections of 100, 150, 300, and 600 nM encapsulated actin concentrations for Figure 1&2</p> <ul> <li> <p>Equirectangular_Projections</p> </li> </ul> <p> contains equirectangular projections of Movie S2, S4-6, S8</p> <p>2. Code.zip -- contains python3 codes and data for MSD and optical flow analysis </p> <ul> <li> <p>MSD</p> </li> </ul> <p> contains codes and data for the MSD analysis in Figure 3f&3g and Figure S5</p> <ul> <li> <p>OpticalFlow</p> </li> </ul> <p> contains codes and data for optical flow analysis in Figure 4b&4c</p> <p> </p>
Data repository Moringa filber filters npJ clean water
<p>The file contains the experimental data and analysis presented in the manuscript on Moringa functionalized natural fiber filters.</p>
Structure factor repository
<p>Structure factors extracted from glass science research papers</p>
Repository for the paper "Stability of the Jupiter southern polar vortices inspected through vorticity using Juno/JIRAM data"
<p>This repository contains all the *img and *lbl files that have been used in the analysis reported in "Stability of the Jupiter southern polar vortices inspected through vorticity using Juno/JIRAM data". Please see the text for details. </p>
Carbon loss pathways in degraded peatlands: Repository dataset
<p>The data on the following sheets is associated with the paper:</p> <p> </p> <p>Evans, M.G., Alderson, D.M., Evans, C.D., Stimson, A., Goulsbra, C., Allott,T.E.H., Worrall, F., Crouch, T., Walker, J., Garnett, M.H., Rowson, J. (2022). Carbon Loss Pathways in Degraded Peatlands: New Insights from Radiocarbon Measurements of Peatland Waters. </p> <p> </p> <p>The data are organised according to the figures within the paper, with the data for each figure corresponding to an individual datasheet. The methods for data collection can be found in the associated manuscript.</p> <p> </p> <p>For further information please contact Martin Evans (martin.g.evans@manchester.ac.uk) or Danielle Alderson (danielle.alderson@manchester.ac.uk).</p> <p> </p> <p>Figures 1, 7 and 11 either do not contain data or are visual model outputs and are therefore not included. </p> <p> </p>
PONE-D-21-22767R1_repository
<p>One of the core features of hoarding is the difficulty in discarding objects, a behavior maintained by dysfunctional beliefs and negative emotions experienced when people who hoard must discard valuable things. Based on our knowledge, longitudinal studies investigating the impact of leaving important objects on psychological processes have not been implemented.</p> <p>Our study's principal aim was to explore thoughts and feelings at different times (at baseline, during the week, and at the end of the week) in two groups of subjects, one with high (n=53; 49.1%) and one with low (n=55; 50.9%) hoarding features, when they had to leave a valuable object at the University lab.</p> <p>For the assessment phase, a mixed-method approach was employed, which was based on the administration of self-report questionnaires, ad hoc surveys, and a daily self-monitoring schedule to investigate hoarding, anxiety, depressive, obsessive-compulsive, and emotional processes-related features. Data showed that participants with high hoarding scores: 1) scored higher for anxiety sensitivity, distress tolerance, and emotional dysregulation; 2) referred to more negative emotions in leaving their object; 3) had more intrusive object-related beliefs; 4) experienced a higher frequency of negative emotions during the week. ‌ Dysfunctional hoarding beliefs were related with the frequency of thoughts and negative feelings experienced during the week and, with anxiety sensitivity and difficulty in tolerating distress, they also contributed to explain the level of discomfort experienced when participants with higher hoarding scores had to leave their object. These results suggest the importance of emotional processes in the hoarding framework, highlighting that they too are essential to be assessed and treated in clinical settings.</p>
Cosegmentation for Plant Phenotyping+ (CosegPP+) Data Repository Collected Via a High-Throughput Imaging System
<p>CosegPP+ is an extension of CosegPP (https://doi.org/10.5281/zenodo.5117176) with binary masks for a collection of cosegmentation and segmentation algorithms. </p> <p>We thank Vincent Stoeger for acquiring the dataset using LemnaTec at the University of Nebraska-Lincoln.</p> <p>If you use this dataset, please cite this paper:</p> <table> <tbody> <tr></tr> <tr> <td> <div>Quiñones, R., Samal, A., Das Choudhury, S., & Muñoz-Arriola, F. (2023). OSC-CO2: coattention and cosegmentation framework for plant state change with multiple features. <em>Frontiers in Plant Science</em>, <em>14</em>, 1211409.</div> </td> </tr> <tr> <td> </td> </tr> </tbody> </table> <p> </p>
Data repository of the paper "Library of simulated gamma-ray glows and application to previous airborne observations" by D. Sarria et al.
<p><strong>Data repository of the paper "Library of simulated gamma-ray glows and application to previous airborne observations" by <em>D. Sarria et al.</em></strong></p> <p> </p>
Sutra repository at the Zhihuasi (detail)
Showing a corner of the crown of the sutra repository (*jingzang* 經藏) and the ceiling cupola (*zaojing* 藻井) above. The repository is a receptacle used by Chinese Buddhists to deposit and worship the Buddhist canon (Tripitaka). Source: Objaverse 1.0 / Sketchfab
Driving Traffic to Institutional Repositories: How Search Engine Optimization can Increase the Number of Downloads from IR
<p>The success of institutional repositories (IR) is measured in large part by the number of file downloads they sustain. Most traffic to IR is referred by Internet search engines, but referrals are hindered when IR are not properly optimized for search engine harvesting and indexing, leading to low visitation and downloads. This presentation will discuss search engine optimization techniques, especially for Google Scholar, which can be responsible for the majority of referrals that result in IR file downloads. The presentation will also introduce a new web service called RAMP (Repository Analytics & Metrics Portal) that accurately counts file downloads from IR and requires no installation or training.</p>
Image Repository for Excessive leaf oil modulates the plant abiotic stress response via reduced stomatal aperture in tobacco (Nicotiana tabacum)
<p>This repository contains raw image data from <em>Nicotiana tabacum</em>, associated with a publication related to wild-type and high lipid producing (HLP) tobacco varieties. Sample preparation methods and associated analysis can be found in the associated publication. For information and details, find more on the project Github: https://github.com/danforthcenter/tobacco-heat-paper.</p> <p><strong>Contact information: </strong></p> <p>Katherine M. Murphy, Donald Danforth Plant Science Center, kmurphy@danforthcenter.org</p>
Policies of educational journals regarding deposit in repositories
<p>Science, as a knowledge-building enterprise, relies heavily on the communication of findings through scientific publications. Collaboration among researchers drives scientific progress, and open access, coupled with technological advancements, brings knowledge closer to society. At the global and national levels, measures are being implemented to promote data sharing, although differences persist between fields of knowledge, such as education, where there is a lack of evidence on sharing practices.</p> <p><br>An analysis of the policies of 60 international education journals regarding data deposition reveals a variety of approaches and levels of specificity While progress has been made, this disparity suggests the need for standardization and clarity. The lack of incentives and specialized resources also hinders information sharing in education. Progress towards transparency and accessibility in educational research is evident, but a greater commitment from the scientific community is required to promote effective data management practices.</p>
Github Repository for "Social interactions generate complex selection patterns in virtual worlds"
<p>Repository for <br><strong>"Social interactions generate complex selection patterns in virtual worlds"</strong><br><em>Francesca Santostefano, Maxime Fraser Franco, Pierre Olivier Montiglio</em><br>Journal of Evolutionary Biology 2024</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.