Find research datasets worth reusing

Data from: Particle backtracking improves breeding subpopulation discrimination and natal-source identification in mixed populations

We provide a novel method to improve the use of natural tagging approaches for subpopulation discrimination and source-origin identification in aquatic and terrestrial animals with a passive dispersive phase. Our method integrates observed site-referenced biological information on individuals in mixed populations with a particle-tracking model to retrace likely dispersal histories prior to capture (i.e., particle backtracking). To illustrate and test our approach, we focus on western Lake Erie's yellow perch (Perca flavescens) population during 2006–2007, using microsatellite DNA and otolith microchemistry from larvae and juveniles as natural tags. Particle backtracking showed that not all larvae collected near a presumed hatching location may have originated there, owing to passive drift during the larval stage that was influenced by strong river- and wind-driven water circulation. Re-assigning larvae to their most probable hatching site (based on probabilistic dispersal trajectories from the particle backtracking model) improved the use of genetics and otolith microchemistry to discriminate among local breeding subpopulations. This enhancement, in turn, altered (and likely improved) the estimated contributions of each breeding subpopulation to the mixed population of juvenile recruits. Our findings indicate that particle backtracking can complement existing tools used to identify the origin of individuals in mixed populations, especially in flow-dominated systems.

opencc-zeroJul 2012View details →

Data from: Identification of source-sink dynamics in mountain lions of the Great Basin

Natural and anthropogenic boundaries have been shown to affect population dynamics and population structure for many species with movement patterns at the landscape level. Understanding population boundaries and movement rates in the field for species that are cryptic and occur at low densities is often extremely difficult and logistically prohibitive; however genetic techniques may offer insights that have previously been unattainable. We analyzed thirteen microsatellite loci for 739 mountain lions (Puma concolor) using muscle tissue samples from individuals in the Great Basin throughout Nevada and the eastern Sierra Nevada mountain range to test the hypothesis that heterogeneous hunting pressure results in source-sink dynamics at the landscape scale. We used a combination of non-spatial and spatial model-based Bayesian clustering methods to identify genetic populations. We then used a recently developed Bayesian multilocus genotyping method to estimate asymmetrical rates of contemporary movement between those sub-populations and to identify source and sink populations. We identified 2 populations at the highest level of genetic structuring with a total of 5 subpopulations in the Great Basin of Nevada and the eastern Sierra Nevada range. Our results suggest that source-sink dynamics occur at landscape scales for wide-ranging species, such as mountain lions, and that source populations may be those that are under relatively less hunting pressure and that occupy refugia.

Data from: Columnar cacti as sources of energy and protein for frugivorous bats in a semi-arid ecosystem

Columnar cacti constitute the dominant elements in the vegetation structure of arid and semi-arid New World ecosystems representing a plethora of food resources for vertebrate consumers. Previous stable isotope analysis in Central Mexico showed that columnar cacti are of low importance to build tissue for frugivorous bats. We used carbon stable isotope analysis of whole blood and breath samples collected from four species of frugivorous bats (Sturnira parvidens, Sturnira ludovici, Artibeus jamaicensis, and Artibeus intermedius) to reconstruct the importance of cactus plants in their diet. Breath samples were collected within 10 min (B10) of bat capture and ~12 h after capture (B720), representing the oxidation of recently ingested food and of body reserves, respectively. We expected that bats relied primarily on non-cactus food to construct tissues and fuel oxidative metabolism. Non-cactus food strongly predominated for tissue building, whereas oxidative metabolism was supported by a moderate preponderance of non-cactus food for B10 samples, and a moderate preponderance of cactus food or an equal contribution of both sources for B720 samples. Artibeus and Surnira species appear to cover a narrow part of the diet with cactus food, confirming that the incorporation of nutrients derived from these plants is not generalized among vertebrate consumers.

opencc-zeroDec 2016View details →

Data from: Depletion of heterogeneous source species pools predicts future invasion rates

Predicting how increasing rates of global trade will result in new establishments of potentially damaging invasive species is a question of critical importance to the development of national and international policies aimed at minimizing future invasions. Centuries of historical movement and establishment of invading species may have depleted the supply of species available for future invasions, and it has been suggested that the problem of invasions will diminish as a result of this. However, the extent to which source pool depletion affects future invasions remains unclear. Here we describe a mechanistic model that captures the simultaneous effects of depletion of source species pools along with increases in pathway rates (e.g. imports) to predict future numbers of new invasions. We assume that the distribution of species abundance within invasion pathways is positively skewed, which is modelled using a log-normal distribution. Given their high propagule pressure, the most abundant species are likely to invade first, while the many rare species are likely to invade only under high pathway volumes. We apply this model to the case study of bark beetle, Scolytinae, invasions in the USA. Source species pools in Europe and Asia (225 and 655 species of Scolytinae, respectively) are much larger than numbers that have historically established (16 and 32). Parameterization of the model indicates a highly skewed species abundance distribution in the pathway and this is confirmed by species frequencies in port inspection records, thus explaining why only a small fraction of species has historically invaded. Forecasts from the model indicate that with increasing rates of imports, more species from these regions are likely to invade in the future despite the depletion of the most abundant species from source species pools. Previous statistical models tend to underestimate future establishments in the presence of increasing import rates due to their failure to account for key underlying mechanisms. Policy implications. The mechanistic model developed here is widely applicable for predicting future invasions of all taxa and provides insights into how increases in rates of imports counteract the species pool depletion effect, resulting in the continued establishment of new species.

opencc-zeroDec 2013View details →

Data from: Poor infant and young child feeding practices and sources of caregivers' feeding knowledge in rural Hebei Province, China: findings from a cross-sectional survey

Objectives: To obtain a general overview of infant and young child feeding practices in one rural county in China and identify current delivery channels and challenges. Design: A cross-sectional study. Setting: A rural county, Zhao County, in Hebei Province, China. Participants: 10 clusters were first selected within each township (16 townships in total) with proportional to population size sampling. In each cluster, a name list was used to select 13 children aged 0–23 months. We interviewed caregivers of all the selected children. Primary and secondary outcomes measures: Coverage of infant feeding practices, reasons for low coverage of infant feeding practices and current delivery channels of infant feeding practices. Results: Findings from our survey indicated that infant feeding practices were poor. Early initiation of breastfeeding was only 22.4%, exclusive breastfeeding for 6 months was less than 10% and continued breastfeeding up to the age of two was just 38.2%. Only 32.5% of children were given iron-rich or iron-fortified foods. The leading sources of infant feeding information were family members, neighbours, friends and popular media. Only around 20% of the information came from health facilities and nearly none came from communities. Household property data showed that 99.9% of households owned televisions and 99.4% owned mobile phones. In addition, 61.2% of the households owned computers, with 54.8% having access to the internet. Conclusions: Few caregivers of children in Zhao County received feeding information during pregnancy and after delivery. Moreover, their feeding knowledge and practices were poor. Multi-channel approaches, delivered through health facilities, community resources, popular media, the internet and mobile phones, hold potential to improve infant feeding practices and should be explored in future studies. Strengths and limitations: Although this study took place only within one county, a full range of globally standard feeding indicators was used to assess the feeding practices of caregivers in our study. The name lists of children in some villages may not be complete, and therefore selection bias may have occurred. Some indicators may have recall bias due to long recall time. Trial registration number: ChiCTR-PRC-11001446.

Data from: Population-level consequences of herbivory, changing climate and source-sink dynamics on a long-lived invasive shrub

Long-lived plant species are highly valued environmentally, economically, and socially, but can also cause substantial harm as invaders. Realistic demographic predictions can guide management decisions, and are particularly valuable for long-lived species where population response times can be long. Long-lived species are also challenging, given population dynamics can be affected by factors as diverse as herbivory, climate, and dispersal. We developed a matrix model to evaluate the effects of herbivory by a leaf-feeding biological control agent released in Australia against a long-lived invasive shrub (mesquite, Leguminoseae: Prosopis spp.). The stage-structured, density-dependent model used an annual time step and 10 climatically diverse years of field data. Mesquite population demography is sensitive to source–sink dynamics as most seeds are consumed and redistributed spatially by livestock. In addition, individual mesquite plants, because they are long lived, experience natural climate variation that cycles over decadal scales, as well as anthropogenic climate change. The model therefore explicitly considered the effects of both net dispersal and climate variation. Herbivory strongly regulated mesquite populations through reduced growth and fertility, but additional mortality of older plants will be required to reach management goals within a reasonable time frame. Growth and survival of seeds and seedlings were correlated with daily soil moisture. As a result, population dynamics were sensitive to rainfall scenario, but population response times were typically slow (20–800 years to reach equilibrium or extinction) due to adult longevity. Equilibrium population densities were expected to remain 5% higher, and be more dynamic, if historical multi-decadal climate patterns persist, the effect being dampened by herbivory suppressing seed production irrespective of preceding rainfall. Dense infestations were unlikely to form under a drier climate, and required net dispersal under the current climate. Seed input wasn't required to form dense infestations under a wetter climate. Each factor we considered (ongoing herbivory, changing climate, and source–sink dynamics) has a strong bearing on how this invasive species should be managed, highlighting the need for considering both ecological context (in this case, source–sink dynamics) and the effect of climate variability at relevant temporal scales (daily, multi-decadal, and anthropogenic) when deriving management recommendations for long-lived species.

opencc-zeroDec 2017View details →

Data from: Restoring dryland old fields with native shrubs and grasses: does facilitation and seed source matter?

Restoration of agricultural fields is challenging, especially in arid and semi-arid ecosystems. We conducted experiments in two fields in the Great Basin, USA, which differed in cultivation history and fertility. We tested the effects of different levels of functional diversity (planting grasses and shrubs together, vs. planting shrubs alone), seed source (cultivars, local or distant wild-collections), and irrigation regime (spring or fall and spring) on restoration outcomes. We sowed either: 1) grasses and shrubs in year one, 2) shrubs only, in year one, 3) grasses in year one with herbicide, shrubs in year two, or 4) shrubs alone in year two, after a year of herbicide. We irrigated for two years and monitored for three years. Shrub emergence was highest in the lower fertility field, where increasing functional diversity by seeding grasses had a neutral or facilitative effect on shrub emergence. In the higher fertility field, increasing functional diversity appeared to have a neutral to competitive effect. After declines in shrub densities after irrigation ceased, these effects did not persist. Grasses initially suppressed or had a neutral effect on weeds relative to an unseeded control, but had neutral or facilitative effects on weeds relative to shrub-only seeding. Initially, commercial grasses were either equivalent to or outperformed wild-collected grasses, but after irrigation ceased, commercial grasses were outperformed by wild-collected grasses in the higher fertility field. Local shrubs initially outperformed distant shrubs, but this effect did not persist. Fall and spring irrigation combined with local shrubs and wild-collected grasses was the most successful strategy in the higher fertility field, while in the lower fertility field, irrigation timing had fewer effects. Superior shrub emergence and higher grass persistence indicated that the use of wild and local seed sources is generally warranted, whereas the effects of functional diversity and irrigation regime were context-dependent. A bet-hedging approach that uses a variety of strategies may maximize the chances of restoration success.

opencc-zeroDec 2018View details →

Data from: Coalescent models characterize sources and demographic history of recent round goby colonization of Great Lakes and inland waters

The establishment and spread of aquatic invasive species is ecologically and economically harmful and a source of conservation concern internationally. Processes of species invasion have traditionally been inferred from observational data of species presence/absence and relative abundance. However, genetic-based approaches can provide valuable sources of inference. Restriction-site associated DNA sequencing was used to identify and genotype single nucleotide polymorphism (SNP) loci for Round Gobies (Neogobius melanostomus) (N=440) from 18 sampling locations in the Great Lakes and in three Michigan, USA drainages (Flint, Au Sable, and Cheboygan River basins). Sampled rivers differed in size, accessibility, and physical characteristics including man-made dispersal barriers. Population levels of genetic diversity and inter-population variance in SNP allele frequency were used in coalescence-based Approximate Bayesian Computation (ABC) to statistically compare models representing competing hypotheses regarding source population, post-colonization dispersal, and demographic history in the Great Lakes and inland waters. Results indicate different patterns of colonization across the three drainages. In the Flint River, models indicate a strong population bottleneck (< 3% of contemporary effective population size) and a single founding event from Saginaw Bay led to the colonization of inland river segments. In the Au Sable River, analyses could not distinguish potential source populations, but supported models indicated multiple introductions from one source population. In the Cheboygan River, supported models indicated that colonization likely proceeded from east (Lake Huron source) to west among inland locales sampled in the system. Despite the recent occupancy of Great Lakes and inland habitats, large numbers of loci analyzed in an ABC framework enable statistically supported identification of source populations and reconstruction of the direction of inland spread and demographic history following establishment. Information from analyses can direct management actions to limit the spread of invasive species from identified sources and most probable vectors into additional inland aquatic habitats.

Data from: Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source

The introduction of invasive species to new locations (that is, biological invasions) can have major impact on biodiversity, agriculture and public health. As such, determining the routes and modality of introductions with genetic data has become a fundamental goal in molecular ecology. To assist with this goal, new statistical methods and frameworks have been developed, such as approximate Bayesian computation (ABC) for inferring invasion history. Here, we present a model of invasion accounting for multiple introductions from a single source (MISS), a heretofore largely unexplored model. We simulate microsatellite data to evaluate the power of ABC to distinguish between single and multiple introductions from the same source, under a range of demographic parameters. We also apply ABC to microsatellite data from three invasions of bumblebee in New Zealand. In addition, we assess the performance of several methods of summary statistics selection. Our simulated results suggested good ability to distinguish between one- and two-wave models over much but not all of the parameter space tested, independent of summary statistics used. Globally, parameter estimation was good except for bottleneck timing. For one of the bumblebee species, we clearly rejected the MISS model, while for the other two we found inconclusive results. Since a second wave may provide genetic reinforcement to initial colonists, help relieve inbreeding among founders, or increase the hazard of the invasion, its detection may be crucial for managing invasions; we suggest that the MISS model could be considered as a potential model in future theoretical and empirical studies of invasions.

opencc-zeroAug 2019View details →

Data from: Seasonal shifts and complementary use of pollen sources by two bee, a lacewing and a ladybeetle species in European agricultural landscapes

1. Continuous availability of food resources, such as pollen, is vital for many insects that provide pollination and pest control services to agriculture. However, there is a lack of knowledge about the shared or complementary use of floral resources by such species, which hampers more effective landscape management to simultaneously promote them in agroecosystems. 2. Here, we simultaneously quantified pollen use by a bumblebee (Bombus terrestris) and a mason bee (Osmia bicornis), two bee species recognized as important crop pollinators, as well as a lacewing (Chrysoperla carnea) and a ladybeetle species (Harmonia axyridis), both common predators of crop aphids, throughout the season in 23 agricultural landscapes in Germany and Switzerland. 3. Pollen diets were more diverse and similar among C. carnea and H. axyridis compared to the two bee species, but all four species shared key pollen types early in the season such as Acer, Quercus, Salix and Prunus. All species exhibited a pronounced shift in pollen sources from primarily woody plants (mainly trees) in spring to primarily herbaceous plants in summer. The majority of pollen (overall ≥64%) came from non-agricultural plants even in crop-dominated landscapes. 4. Synthesis and applications. Our results highlight the importance of trees as pollen sources for many insect species, particularly early in the season. Our findings support incentives that promote heterogeneous agricultural landscapes including both woody and herbaceous semi-natural habitats, ensuring phenological complementarity of floral resources for insect species that can provide pollination and pest control services to agriculture. The identified key plant species can help to design and optimize agri-environment schemes to promote these functionally important insects.

opencc-zeroDec 2013View details →

Data from: Complex sources of variance in female dominance rank in a nepotistic society

Many mammalian societies are structured by dominance hierarchies, and an individual's position within this hierarchy can influence reproduction, behaviour, physiology and health. In nepotistic hierarchies, which are common in cercopithecine primates and also seen in spotted hyaenas, Crocuta crocuta, adult daughters are expected to rank immediately below their mother, and in reverse age order (a phenomenon known as 'youngest ascendancy'). This pattern is well described, but few studies have systematically examined the frequency or causes of departures from the expected pattern. Using a longitudinal data set from a natural population of yellow baboons, Papio cynocephalus, we measured the influence of maternal kin, paternal kin and group size on female rank positions at two life history milestones, menarche and first live birth. At menarche, most females (73%) ranked adjacent to their family members (i.e. the female held an ordinal rank in consecutive order with other members of her maternal family); however, only 33% of females showed youngest ascendancy within their matriline at menarche. By the time they experienced their first live birth, many females had improved their dominance rank: 78% ranked adjacent to their family members and 49% showed youngest ascendancy within their matriline. The presence of mothers and maternal sisters exerted a powerful influence on rank outcomes. However, the presence of fathers, brothers and paternal siblings did not produce a clear effect on female dominance rank in our analyses, perhaps because females in our data set co-resided with variable numbers and types of paternal and male relatives. Our results also raise the possibility that female body size or competitive ability may influence dominance rank, even in this classically nepotistic species. In total, our analyses reveal that the predictors of dominance rank in nepotistic rank systems are much more complex than previously thought.

Data from: Separating sources of density-dependent and density-independent establishment limitation in invading species

Successful colonization by invasive species depends on both the ability to disperse seeds to a site and an ability to establish once seeds have arrived. While seed and establishment limitation are known to jointly influence colonization, decomposing establishment limitation into density-dependent and density-independent components has remained challenging. Here, we couple theoretical models of recruitment with a multispecies invasion experiment conducted within a natural gradient of soil moisture and productivity to assess how variation in establishment limitation shapes outcomes for invasion. Recruitment was affected by both density-dependent and density-independent sources of establishment limitation in three of four species. Soil moisture stress and productivity both increased density-independent mortality in one species, whereas density-dependent mortality increased in locations with favourable soil moisture. Synthesis. Successful establishment of invading species can be limited by both density-dependent and density-independent mechanisms. In particular, the strength of density-independent limitation may depend on natural gradients in abiotic factors. The varying strengths of establishment limitation suggest that patterns of invasion are likely to be uneven both in space and in time. Understanding how intraspecific competitive constraints and density-independent limitation vary with abiotic gradients can assist with predicting when invasions are likely to occur, information that can be harnessed in the development of better methods for control.

opencc-zeroDec 2010View details →

Data from: Nest inheritance is the missing source of direct fitness in a primitively eusocial insect

Animals that co-operate with non-relatives represent a challenge to inclusive fitness theory, unless co-operative behavior is shown to provide direct fitness benefits. Inheritance of breeding resources could provide such benefits, but this route to co-operation has been little investigated in the social insects. We show that nest inheritance can explain the presence of unrelated helpers in a classic social insect model, the primitively eusocial wasp Polistes dominulus. We found that subordinate helpers produced more direct offspring than lone breeders, some while still subordinate but most after inheriting the dominant position. Thus, while indirect fitness obtained through helping relatives has been the dominant paradigm for understanding eusociality in insects, direct fitness is vital to explain co-operation in P. dominulus.

Data from: Rising atmospheric CO2 is reducing the protein concentration of a floral pollen source essential for North American bees

At present, there is substantive evidence that the nutritional content of agriculturally important food crops will decrease in response to rising levels of atmospheric carbon dioxide, Ca. However, whether Ca-induced declines in nutritional quality are also occurring for pollinator food sources is unknown. Flowering late in the season, goldenrod (Solidago spp.) pollen is a widely available autumnal food source commonly acknowledged by apiarists to be essential to native bee (e.g. Bombus spp.) and honeybee (Apis mellifera) health and winter survival. Using floral collections obtained from the Smithsonian Natural History Museum, we quantified Ca-induced temporal changes in pollen protein concentration of Canada goldenrod (Solidago canadensis), the most widespread Solidago taxon, from hundreds of samples collected throughout the USA and southern Canada over the period 1842–2014 (i.e. a Ca from approx. 280 to 398 ppm). In addition, we conducted a 2 year in situ trial of S. canadensis populations grown along a continuous Ca gradient from approximately 280 to 500 ppm. The historical data indicated a strong significant correlation between recent increases in Ca and reductions in pollen protein concentration (r2 = 0.81). Experimental data confirmed this decrease in pollen protein concentration, and indicated that it would be ongoing as Ca continues to rise in the near term, i.e. to 500 ppm (r2 = 0.88). While additional data are needed to quantify the subsequent effects of reduced protein concentration for Canada goldenrod on bee health and population stability, these results are the first to indicate that increasing Ca can reduce protein content of a floral pollen source widely used by North American bees.

opencc-zeroDec 2017View details →

Data from: Genetic source-sink dynamics among naturally structured and anthropogenically fragmented puma populations

Fragmentation of wildlife populations is increasing on a global scale and understanding current population genetic structure, genetic diversity, and genetic connectivity is key to informing wildlife management and conservation. We genotyped 992 pumas (Puma concolor) at 42 previously developed microsatellite loci and identified 10 genetic populations throughout the states of California and Nevada, USA. Although some genetic populations had large effective population sizes, others were small and inbred. Genetic diversity was extremely variable (heterozygosity, uHe = 0.33–0.53), with some populations nearly as low as an endangered subspecies, the Florida Panther (P. c. coryi, uHe = 0.24). Specifically, pumas in the Sierra Nevada were genetically diverse and formed the largest genetic source population in the region. In contrast, coastal and southern populations surrounded by urbanization had low genetic diversity, fragmented gene flow, and tended to be genetic sinks. The strong population genetic structuring of pumas across California (FST = 0.05–0.39) is vastly different than other genetic studies in less-urbanized states, including our analysis in Nevada, where pumas had few barriers to gene flow and weak population differentiation. Our results have far-reaching conservation and management implications for pumas and indicate large-scale fragmentation in one of North America's most biodiverse and rapidly-urbanizing regions.

Data from: Gene flow from an adaptively divergent source causes rescue through genetic and demographic factors in two wild populations of Trinidadian guppies

Genetic rescue, an increase in population growth owing to the infusion of new alleles, can aid the persistence of small populations, but its use as a management tool is limited by a lack of empirical data geared towards predicting effects of gene flow on local adaptation and demography. Experimental translocations provide an ideal opportunity to monitor the demographic consequences of gene flow. In this study we take advantage of two experimental introductions of Trinidadian guppies to test the effects of gene flow on downstream native populations. We individually marked guppies from the native populations to monitor population dynamics for 3 months before and 26 months after gene flow. We genotyped all individuals caught during the first 17 months at microsatellite loci to classify individuals by their genetic ancestry: native, immigrant, F1 hybrid, F2 hybrid, or backcross. Our study documents a combination of demographic and genetic rescue over multiple generations under fully natural conditions. Within both recipient populations, we found substantial and long-term increases in population size that could be attributed to high survival and recruitment caused by immigration and gene flow from the introduction sites. Our results suggest that low levels of gene flow, even from a divergent ecotype, can provide a substantial demographic boost to small populations, which may allow them to withstand environmental stochasticity.

opencc-zeroDec 2017View details →

Data from: Optimising trait and source selection for explaining occurrence and abundance changes: a case study using British Butterflies

Functional traits that define the ecological role of an organism are increasingly being used to determine and predict responses to environmental change. Functional trait analyses of butterflies remain underexplored compared with other taxa, such as plants. Previous works using butterfly functional traits have not comprehensively addressed issues about the quality of trait data sets used and the relative predictive power of different trait types. We compare the consistency of trait descriptions between six widely used trait sources for the British butterfly fauna. We analysed consistency of trait sources using Fleiss's kappa and ICC. PCA was used to produce species ordinations, comparing outputs to examine which trait sets were better at explaining recent species range and abundance changes within the UK. There was a large range in congruence values for specific traits between sources. No single source can be relied upon to produce accurate trait information for British butterflies. Most trait sets are poor predictors of abundance and occurrence changes but are better at predicting current occurrence. An extensive trait set, supplementing biotope-related traits with explicit resource-based information recovers more informative ecological classifications and models than those primarily based on life-history traits or biotope descriptors. Smaller trait sets do, however, recover the specialist-generalist continuum. We conclude that analyses of distribution and abundance changes that rely on traits are highly dependent on trait source and trait type. For butterflies, traits that are based on measures of biotope occupancy should be avoided in explaining changes of abundance and distribution. Including trait information that describes their resource requirements is essential for such analyses.

Data from: Tissue culture as a source of replicates in non-model plants: variation in cold response in Arabidopsis lyrata ssp. petraea

Whilst genotype-environment interaction is increasingly receiving attention by ecologists and evolutionary biologists, such studies need genetically homogeneous replicates-a challenging hurdle in outcrossing plants. This could potentially be overcome by using tissue culture techniques. However, plants regenerated from tissue culture may show aberrant phenotypes and "somaclonal" variation. Here we examined the somaclonal variation due to tissue culturing using the response to cold treatment of the photosynthetic efficiency (chlorophyll fluorescence measurements for Fv/Fm, Fv'/Fm' and ΦPSII, representing maximum efficiency of photosynthesis for dark- and light-adapted leaves, and the actual electron transport operating efficiency, respectively, which are reliable indicators of photoinhibition and damage to the photosynthetic electron transport system). We compared this to variation among half-sibling seedlings from three different families of Arabidopsis lyrata ssp. petraea. Somaclonal variation was limited and we could successfully detect within-family variation in change in chlorophyll fluorescence due to cold shock with the help of tissue-culture derived replicates. Icelandic and Norwegian families exhibited higher chlorophyll fluorescence, suggesting higher performance after cold shock, than a Swedish family. Although the main effect of tissue culture on Fv/Fm, Fv'/Fm' and ΦPSII, was small, there were significant interactions between tissue culture and family, suggesting that the effect of tissue culture is genotype-specific. Tissue-cultured plantlets were less affected by cold treatment than seedlings, but to a different extent in each family. These interactive effects, however, were comparable to, or much smaller than the single effect of family. These results suggest that tissue culture is a useful method for obtaining genetically homogenous replicates for studying genotype-environment interaction related to adaptively-relevant phenotypes, such as cold response, in non-model outcrossing plants.

Data from: Effect of pyric herbivory on source-sink dynamics in grassland birds

Grasslands world-wide provide a host of ecosystem services. In particular, these grasslands serve as biodiversity repositories for a myriad of imperilled animal species. One such group is grassland birds, which have experienced significant declines, predominantly caused by extensive loss and degradation of native grasslands. Rangeland management that promotes increasing and sustaining livestock production through reducing the inherent, disturbance-driven variability that historically occurred in grasslands is considered a major contributing factor to these declines. An alternative approach to this homogeneous management paradigm attempts to restore a shifting mosaic of disturbance patches across the landscape through the spatial and temporal interactions of fire and grazing (i.e. pyric herbivory). Application of pyric herbivory through patch-burn grazing increases overall habitat heterogeneity, likely a critically important factor in maintaining and enhancing grassland bird populations. We compared reproductive rates and estimates of fecundity of three grassland birds nesting in grasslands maintained by traditional and patch-burn grazing management paradigms in the Southern Great Plains of North America. Additionally, we used a sensitivity analysis approach to assess population stability (i.e. λ = 1) and source–sink population dynamics under the two management practices. Nest survival for dickcissels Spiza americana and grasshopper sparrows Ammodramus savannarum was higher in patch-burned grasslands than in traditionally managed grasslands, while nest survival for eastern meadowlarks Sturnella magna was higher in traditionally managed grasslands than in patch-burned grasslands. Dickcissels and grasshopper sparrows responded positively to patch burning with source habitats occurring over a wider range of survival rates under patch burning than traditional management, while no clear pattern emerged in source–sink dynamics of eastern meadowlarks. Synthesis and applications. Management strategies such as patch-burn grazing offer opportunities to restore landscape heterogeneity to benefit bird communities while maintaining livestock production goals. Applying patch-burn grazing to rangelands can increase productivity of grassland birds and could be effective for reversing the decline of grassland birds by providing source habitats more consistently than traditional rangeland management. Our results emphasize the utility of using sensitivity analyses to determine source–sink population dynamics when evaluating management practices. However, land managers should consider that source–sink models have shortcomings and designation of a habitat as a sink does not necessarily mean the habitat has low conservation value.