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Figure 2 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Figure 2 - Neighbour-Joining tree (p-distances) of a 655 bp fragment of the mitochondrial cytochrome c oxidase subunit I (COI) gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 1 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Figure 1 - Lateral (top) and dorsal (bottom) view of the male copulatory organs of Phormia regina from W Europe (left) and N America (right) with a detail of the penis (middle).
Supplementary figure 3 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Supplementary figure 3 - Neighbour-Joining tree (p-distances) of a 633 bp fragment of the nuclear 28S gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 8 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 8 - The Neighbour-Joining tree of the genus Campiglossa with Sphenella marginata as outgroup inferred from COI barcodes. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 9 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 9 - The Neighbour-Joining tree of the genus Orellia inferred from COI barcodes. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 6 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 6 - Best Close Match (BCM) identification of the stripped dataset, e.g. excluding singletons and Urophora (n = 414). Proportions of true positives (TP), false positives (FP), false negatives (FN) and true negatives (TN) are given for 30 arbitrary distance thresholds ranging from 0.15 to 0.00. For each threshold the percentages of precision, accuracy and discarded queries were calculated.
Figure 5 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 5 - Best Close Match (BCM) identification of the entire dataset (n = 555). Proportions of true positives (TP), false positives (FP), false negatives (FN) and true negatives (TN) are given for 30 arbitrary distance thresholds ranging from 0.15 to 0.00. For each threshold the percentages of precision, accuracy and discarded queries were calculated.
Figure 4 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 4 - Identification rates of all five criteria: Neighbour-Joining (NJT) sensu Hebert et al. (2003), revised criteria (NJT_M) according to Meier et al. (2006), and Best Match (BM), Best Close Match (BCM) and All Species Barcodes (ASB) also described by Meier et al. (2006) for four different datasets, including singletons and with (n = 555) or without (n = 452) Urophora, and the same excluding singletons (n = 514) and (n = 414) respectively.
Figure 3 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 3 - Box plots depicting the variation in mean distances using K2P-distance modeling of sequence divergence for intraspecific, interspecific difference among the species and genera, as well as the ingroup genera with the outgroup genus.
Figure 7 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 7 - Relative ID errors at 30 arbitrary threshold values for a. the entire dataset (n = 555), b. the stripped dataset, e.g. excluding singletons and Urophora (n = 414) and c. the stripped dataset excluding the problematic Terellia groups. Linear regression was used to infer the ad hoc threshold for the 95th percentile of the correctly identified queries and the relative ID error does not exceed 5%. In (a) and (b) this value is below 0.00, only in (c) this value is positive: 0.051 (R-square 0.91).
Figure 2 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 2 - The Neighbour-Joining tree of the entire dataset based on COI barcodes. Terminal branches have been collapsed in order to save space, the total number of specimens is given in brackets and the area surface of the triangle represents the amount of variation. When a terminal branch contains two species, both names are provided as well as their respective number of specimens. If a branch contains more than two species only the number of species as well as the number of specimens are given. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 10 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 10 - The Neighbour-Joining tree of the genus Urophora inferred from COI barcodes. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 5 from: Grozeva S, Popov A, Simov N (2013) Sixth European Hemiptera Congress. ZooKeys 319: 1-10. https://doi.org/10.3897/zookeys.319.5975
Figure 5 - Rewarding ceremony of the winners of Michail Josifov awards, 26 June 2012, from left to right: Ondřej Balvín, Qiang Xie, Vikas Suman (the winners in the competition), Alexi Popov, Milena Josifova, Nikolay Simov. Portrait of Michail Josifov on the wall. Photo: Ilia Gjonov.
Figure 4 from: Grozeva S, Popov A, Simov N (2013) Sixth European Hemiptera Congress. ZooKeys 319: 1-10. https://doi.org/10.3897/zookeys.319.5975
Figure 4 - Opening ceremony of the Congress, 25 June 2012, from left to right: Alexi Popov, Matija Gogala, Ernst Heiss, Sakis Drosopoulos.
Figure 1 from: Grozeva S, Popov A, Simov N (2013) Sixth European Hemiptera Congress. ZooKeys 319: 1-10. https://doi.org/10.3897/zookeys.319.5975
Figure 1 - Participants in the Sixth European Hemiptera Congress in front of Scaptopara building, Blagoevgrad, Bulgaria, 26 June 2012. Photo: Werner Holzinger.
Figure 8 from: Stahls G, Haarto A (2014) When mtDNA COI is misleading: congruent signal of ITS2 molecular marker and morphology for North European Melanostoma Schiner, 1860 (Diptera, Syrphidae). ZooKeys 431: 93-134. https://doi.org/10.3897/zookeys.431.7207
Figure 8 - Postgonite, lateral view. A Melanostoma scalare B Melanostoma certum C Melanostoma mellarium and D Melanostoma mellinum.
Figure 9 from: Stahls G, Haarto A (2014) When mtDNA COI is misleading: congruent signal of ITS2 molecular marker and morphology for North European Melanostoma Schiner, 1860 (Diptera, Syrphidae). ZooKeys 431: 93-134. https://doi.org/10.3897/zookeys.431.7207
Figure 9 - Postgonite, ventral view. A Melanostoma scalare B Melanostoma certum C Melanostoma mellarium and D Melanostoma mellinum.
Figure 6 from: Stahls G, Haarto A (2014) When mtDNA COI is misleading: congruent signal of ITS2 molecular marker and morphology for North European Melanostoma Schiner, 1860 (Diptera, Syrphidae). ZooKeys 431: 93-134. https://doi.org/10.3897/zookeys.431.7207
Figure 6 - Cerci and surstyli, dorsal view and surstyli, lateral view. A Melanostoma scalare B Melanostoma certum C Melanostoma mellarium and D Melanostoma mellinum.
Figure 5 from: Stahls G, Haarto A (2014) When mtDNA COI is misleading: congruent signal of ITS2 molecular marker and morphology for North European Melanostoma Schiner, 1860 (Diptera, Syrphidae). ZooKeys 431: 93-134. https://doi.org/10.3897/zookeys.431.7207
Figure 5 - Shape of male sterna 2–4. A Melanostoma scalare B Melanostoma certum C Melanostoma mellarium and D Melanostoma mellinum.
Figure 7 from: Stahls G, Haarto A (2014) When mtDNA COI is misleading: congruent signal of ITS2 molecular marker and morphology for North European Melanostoma Schiner, 1860 (Diptera, Syrphidae). ZooKeys 431: 93-134. https://doi.org/10.3897/zookeys.431.7207
Figure 7 - Postgonite and anterior part of hypandrium, lateral view. A Melanostoma scalare B Melanostoma certum C Melanostoma mellarium and D Melanostoma mellinum.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.