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22,710 results for “Plants for planting”
Botanic records from the forest reserves of south west Ghana: Plant species distribution data with checklist and conservation assessments from 114 vegetation plots
<p>South west Ghana is a biodiversity hotspot within the western African lowland tropical rainforest region, supporting many endemic and restricted range plant species. This dataset comprises botanic records from five forest reserves of south west Ghana (Ankasa, Boi Tano, Tano Nimri, Jema Assemkron, Nini Suhein). Vascular plant species distribution data (12,232 records) from 114 vegetation plot samples are presented, surveyed between 1981 and 2015. A plant species checklist including conservation assessments for each species is included. Nomenclature is current as of 2016. The dataset is linked to the publication Marshall et al, 2023, Implications for conservation assessment from flux in the botanical record over 20 years in south west Ghana, Ecology and Evolution <a href="https://doi.org/10.1002/ece3.9775">https://doi.org/10.1002/ece3.9775</a>. The dataset is also used in Marshall et al, 2022, Predictors of plant endemism in two west African forest hotspots, Frontiers in Ecology and Evolution 10:980660 <a href="https://doi.org/10.3389/fevo.2022.980660">https://doi.org/10.3389/fevo.2022.980660</a>.</p>
Data from: Initial ecological change in plant and arthropod community composition after wildfires in designated areas of upland peatland
<p>This dataset is published in conjunction with the publication of : Kelly, R., Montgomery, W. I., & Reid, N. (2022) Initial ecological change in plant and arthropod community composition after wildfires in designated areas of upland peatland. <em>Ecology and Evolution, </em>and contains the environmental, botanical and entomological datasets underpinning the analysis contained there in. Additionally, it contains datasets on seedbanks and bird species which were collected as part of the Northern Ireland Environment Agency funded project 'Quantifying the impact of wildfires in the Northern Ireland' from 2012 to 2015 (see: <a href="https://www.daera-ni.gov.uk/publications/quantifying-impact-wildfires-northern-ireland-final-report-2016">https://www.daera-ni.gov.uk/publications/quantifying-impact-wildfires-northern-ireland-final-report-2016</a>)</p> <p>This data underpins the following publications which discuss the impacts of wildfires at these key upland sites in Northern Ireland: </p> <ul> <li>Kelly, R., Boston, E., Montgomery, W. I., & Reid, N. (2016). The role of the seed bank in recovery of temperate heath and blanket bog following wildfires. Applied Vegetation Science, 19(4), 620-633. <a href="https://doi.org/10.1111/avsc.12242">https://doi.org/10.1111/avsc.12242</a> </li> <li>Kelly, R., Montgomery, W. I., & Reid, N. (2018). Differences in soil chemistry remain following wildfires on temperate heath and blanket bog sites of conservation concern. Geoderma, 315, 20-26. - <a href="https://doi.org/10.1016/j.geoderma.2017.11.016" rel="noreferrer noopener" title="Persistent link using digital object identifier">https://doi.org/10.1016/j.geoderma.2017.11.016</a> </li> <li>Reid, N., Kelly, R. & Montgomery, W.I. (2022) Impact of wildfires on ecosystems and bird communities on designated areas of blanket bog and heath. Bird Study (In press)</li> <li>Kelly, R., Montgomery, W. I., & Reid, N. (2022) Initial ecological change in plant and arthropod community composition after wildfires in designated areas of upland peatland. Ecology and Evolution. (In press)</li> </ul> <p>Data were collected and collated by Ruth Kelly (ruth.kelly@afbini.gov.uk/ruthkelly123@gmail.com) in collaboration with Dr. Neil Reid, Dr. Emma Boston, Prof. W.I. Montgomery (Queen's University Belfast) and Dr. Damian Mc Ferran (National Museums of Northern Ireland). We are also very grateful to Roy Anderson, Orla McLaughlin, Anna Hart, Rachel Hamill, Adam Mantell, Tony Smith, Joanne Denyer and Richard Weyl for their expertise and assistance in species identification, and to Gillian Riddell, Caroline Finlay, Florentine Spaans, Jeremy Adelard, Marion Chapalain, Alice McPherson, Claire McVeigh, Amber Woods and Rachel Hamill for assistance and expertise in the laboratory and field. </p>
An inventory of crop wild relatives and wild-utilized plants in Canada
<p><span>In the face of global pressures of change and biodiversity loss, crop wild relatives (CWR) and wild-utilized plants (WUS) urgently require conservation attention. To advance conservation, we assembled a national inventory of CWR and WUS in Canada. To assess current ex situ conservation, we gathered a virtual metacollection of CWR and WUS accession data from national genebanks and from botanical gardens. The inventory includes 779 CWR and WUS taxa (658 distinct species), with 263 (222 distinct species) that are related to food crops of global and national importance such as blueberry and cranberry, apple, stone fruits, strawberry, sunflower and saskatoon. Sixty-one food crop CWR taxa are prioritized for breeding potential, and sixteen due to conservation threats. Although most food crop CWR are represented in ex situ collections (91% of species), representation of within-species diversity is low (median = 5% of Canadian ecogeographic types represented per species). Poor representation of within-species diversity demands an integrative conservation strategy that emphasizes <em>in situ</em> protection especially focusing on wild-populations in Canada's southern ecoregions where diversity is concentrated. While genebank collections represent more species and higher accession counts per species, botanical gardens include living collections of charismatic fruit crop relatives and other woody-perennials that are well situated to advance conservation by raising broader awareness of CWR and WUS. To promote further conservation, we present a web application that enables conservation planners and practitioners to identify local CWR and WUS diversity and to identify within-species ecogeographic types that are underrepresented in <em>ex situ</em> conservation systems. </span></p>
Comparison Plant communities Paris 1884-2021
<p>The data presents the changes that occurred in Paris plant communities at a 136-year interval, thanks to the existence of an inventory published in 1884 in a book entitled “Essay on the flora of the Paris pavement limited to outer boulevards, or Catalog of plants that grow spontaneously in streets and on wharves” (Vallot 1884), by a well-known French botanist Joseph Vallot. In 2021, we followed on his footsteps, using the same inventory protocol at exactly the same places : 35 streets, 15 quays and 2 squares in Paris (France). We focused on the spontaneous flora and excluded cultivated/ornamental vegetation. The habitats sampled all belonged to the micro-structures that support vegetation i.e., cracks in asphalt, the base of alignment trees, the feet of walls, the spaces between paving stones… The data gives the list of the species, their ecological characteristics, and the name of the places where the inventories were performed.</p>
Successional and phenological effects on plant-floral visitor interaction networks of a tropical dry forest
<p>1. Plant-pollinator interactions are fundamental to ecosystem functioning; however, the role that succession and phenology have on these interactions is poorly understood, particularly in endangered tropical ecosystems. In highly diverse ecosystems such as tropical dry forests (TDF), variation in water and food availability determines the life cycles of animal pollinators. Therefore, understanding patterns of flowering phenology and plant-pollinator interactions across seasons in successional environments is key to maintaining and restoring TDF.</p> <p>2. We analysed the functional dynamics of plant-floral visitor interactions at the community level across a successional gradient in a Mexican TDF. We evaluated changes in the diversity of blooming plant species and floral visitors, phenological patterns, interaction network metrics, and beta diversity among early, intermediate, and late successional stages, between dry and rainy seasons.</p> <p>3. We found a higher diversity of blooming plant species and a higher richness of animal species in the intermediate and late successional stages. Peak abundance of floral visitors overlapped with flowering peaks in the late successional stages, but this was not consistently the case in the early and intermediate stages. Plant-floral visitors networks differed in structure according to successional stage and season, but specialisation metrics were higher in late successional stages. Interaction networks were more dissimilar between dry and rainy seasons within successional stages than within seasons between successional stages, suggesting connectivity across successional sites during each season. In addition, closely related plant species do not share the same pollination systems in any successional stage.</p> <p>4. Synthesis. Our results showed that plant-floral visitor interactions are dynamic and vary with flowering phenology and with successional changes in plant and animal diversity. Plant-floral visitor interactions were more diverse and specialised in the late successional stages. In the rainy season, differences in network structure among successional stages are due to interaction rewiring, while in the dry season, it is caused by species turnover. Our results demonstrate that seasonality plays a key role in community diversity and network structure and highlight the importance of conserving mature forests to ensure the maintenance of critical pollination interactions across all successional stages.</p>
Datasets from: Local- and landscape-scale drivers of terrestrial herbaceous plant diversity along a tropical rainfall gradient in Western Ghats, India
<p>This data set contains information on local- and landscape-level terrestrial herbaceous plant diversity and critical abiotic factors along a 36-km East-West transect in Mudumalai Tiger Reserve, Tamil Nadu India. Understory angiosperms with no above-ground wood (secondary cambial growth) were considered as herbaceous plants.</p>
Soil biota diversity and plant diversity both contributed to ecosystem stability in grasslands
<p><span>Understanding the effects of diversity on ecosystem stability in the context of global change has </span><span>become</span><span> an important goal of recent ecological research. </span><span>How</span><span>ever,</span><span> the </span><span>effects of </span><span>diversity at multiple scales and trophic levels </span><span>on</span><span> ecosystem stability across environmental gradients </span><span>remain</span><span> unclear. Here, we conducted a field survey of α-, β-, and γ-diversity of plants and soil biota (bacteria, fungi, and nematodes) and estimated </span><span>the </span><span>temporal ecosystem stability of </span><span>NDVI</span> <span>in</span><span> 132 plots on the Mongolian Plateau. After climate and soil environmental variables were controlled for, both the α- and β-diversity of plants and soil biota (mainly via nematodes) together with precipitation explained most variation in ecosystem stability. These findings evidence that the diversity of both soil biota and plants </span><span>contribute</span><span>s</span><span> to ecosystem stability</span><span>. Model</span><span> predictions of</span> <span>the</span><span> future effects of global changes on terrestrial ecosystem stability will require field observations of diversity of both </span><span>plants</span><span> and soil biota.</span></p>
Planted pollinator habitat in agroecosystems: How does the pollinator community respond?
<p>Pollinators are important both ecologically and economically. Nonetheless, documented pollinator population decline threatens ecosystem functioning and human well-being. In response, conservation methods such as augmented pollinator habitat are becoming popular tools to combat pollinator losses. While previous research has shown added habitat can benefit bee communities, there are still aspects of the habitat implementation that require further research, particularly how this will impact bee communities in real-world settings beyond researcher-led efforts. In our study, we use a 2016 initiative mandating the planting of pollinator habitat on research stations across North Carolina, United States to act as an outdoor laboratory to investigate this exact question. From 2016 to 2018, we found significant increases in bee abundance and diversity. However, these increases depended on the quality of habitat, with areas of higher flower cover and diversity supporting larger, more diverse bee communities. Although the habitats positively supported bee communities, we found that resources within the habitats were lower later in the sampling season, highlighting the need of developing seed mixes that include late-season resources. Weedy plants were documented to establish within the habitats, demonstrating the need for regular upkeep and maintenance of pollinator habitat in order to appropriately support bee communities. It is likely that planting pollinator habitat will not be a one-size-fits-all conservation solution, as bee species can respond differently to some habitat characteristics. Future long-term studies on pollinators will be important as natural fluctuations in bee populations may limit findings and many knowledge gaps on native bees still persist.</p>
Discrepancies between the drivers of alpha and beta plant diversity in arable field margins
<p><span>Field margins are major habitats for biodiversity conservation and ecosystem functioning in agricultural landscapes, but biotic homogenization of plant communities threatens their ecological and agronomic functions. Our objective is to assess the effects of field margin structure and long-term management of herbaceous layer over 20 years (1995–2015) on the taxonomic and functional α- and β-diversity, and the functional composition of herbaceous plant communities. In 2015, we surveyed 302 field margins in bocage landscapes of Brittany (France). Results were very similar between taxonomic and functional diversity but revealed discrepancies between α- and β-diversity. Deep ditches, mowing, and grazing increased α-diversity but did not affect β-diversity. Denser hedgerows had lower α-diversity than other field margins but contributed to β-diversity by harboring more unique sets of species or life strategies. Long-term herbicide spraying in field margins and cropping intensity in adjacent habitats did not affect α-diversity, but had more complex effects on β-diversity and selected for common weeds. Preservation of dense hedgerows and abandonment of herbicide spraying are key measures to prevent the establishment of common weeds and biotic homogenization in field margins. Above all, our study shows how important it is to go beyond α-diversity to make robust conservation and restoration decisions.</span></p>
Underwater light attenuation inhibits native submerged plants and facilitates the invasive co-occurring plant Cabomba caroliniana
<p><span>Decreasing in the diversity and distribution of native submerged plants have been widely observed in recent decades. Global underwater darkening, which is mainly caused by radiation dimming and a decrease in transparency due to e.g. eutrophication, </span><span>has emerged as a general trend that strongly hampers the growth of submerged plants in lakes by decreasing the light available for photosynthesis. However, few studies have attempted to compare the responses of native and invasive submerged plants to underwater darkening. In this study, we aimed to compare the effects of light attenuation on the growth and photosynthesis traits of native and invasive submerged plants.</span></p>
Glutathione and neodiosmin feedback sustain plant immunity
<p>Plants have evolved a two-layer immune system comprising pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) that is activated in response to pathogen invasion. Microbial patterns and pathogen effectors can be recognized by surface-localized pattern-recognition receptors (PRRs) and intracellularly localized nucleotide-binding leucine-rich repeat receptors (NLRs) to trigger PTI and ETI responses, respectively. At present, the metabolites activated by PTI and ETI and their roles and signalling pathways in plant immunity are not well understood. In this study, metabolomic analysis showed that ETI and PTI induced various flavonoids and amino acids and their derivatives in plants. Interestingly, both glutathione and neodiosmin content were specifically up-regulated by ETI and PTI, respectively, which significantly enhanced plant immunity. Further studies showed that glutathione and neodiosmin failed to induce a plant immune response in which PRRs/co-receptors were mutated. In addition, glutathione-reduced mutant gsh1 analysis showed that GSH1 is also required for PTI and ETI. Finally, we propose a model in which glutathione and neodiosmin are considered signature metabolites induced in the process of ETI and PTI activation in plants and further continuous enhancement of plant immunity in which PRRs/co-receptors are needed. This model is beneficial for an in-depth understanding of the closed-loop mode of the positive feedback regulation of PTI and ETI signals at the metabolic level.</p>
Legowo Planting System
<p>This is extended data of the assesment of legowo planting system and its counterpart in Southeast Sulawesi. Indonesia</p>
Inter- and infraspecific plant-soil feedbacks of grass species
<p>Plants continuously interact with soil microbiota. These plant-soil feedbacks (PSFs) are considered a driving force in plant community dynamics. However, most PSF information comes from inter-family studies, with limited information on possible causes. We studied the variation of PSFs between and within grass species and identified the soil microbes that are associated with the observed PSFs effects. We grew monocultures of ten cultivars of three grass species (<em>Lolium perenne, Poa pratensis, Schedonorus arundinaceus</em>) using a two-phase PSF experiment. We measured plant total biomass to determine PSFs between and within species and correlated it with sequenced rhizosphere bacteria and fungi. In the soil conditioning phase, grass species developed microbial legacies that affected the performance of other grass species in the feedback phase. We detected overall negative interspecific PSFs. While we show that <em>L. perenne</em> and <em>P. pratensis</em> increased their performance respectively in conspecific and heterospecific soils, <em>S. arundinaceus</em> was not strongly affected by the legacies of the previous plant species. Contrary to our expectation, we found no evidence for intraspecific variation in PSFs. Bacterial taxa associated with PSFs included members of<em> Proteobacteria</em>, <em>Firmicutes, </em><em>Verrucomicrobia</em> and <em>Planctomycetes</em> whereas fungal taxa included members of <em>Ascomycota.</em> Our results suggest differences in PSF effects between grass species, but not between cultivars within species. Thus, in the studied grass species, there might be limited potential for breeding on plant traits mediated by PSFs. Furthermore, we point out potential microbial candidates that might be driving the observed PSF effects that could be further explored. </p>
Functional and taxonomic diversity indices of riparian plants in river networks
<p>1. The River Continuum Concept (RCC) predicts a gradual shift of organisms' functional adaptations along the longitudinal (upstream-downstream) gradient, as well as the maximization of the biotic diversity in mid-reaches. Although this theoretical framework was originally developed for stream macroinvertebrates, we tested whether such a pattern can be also observed in riparian plant communities.</p> <p>2. We studied the cover of plant species in riparian forests across two river networks. We analyzed the taxonomic and functional diversity indices, as well as community-weighted means of functional traits in relation to the plots' position in the catchments.</p> <p>3. The observed patterns were largely in line with the predictions of RCC. We discovered a significant decrease in the specific leaf area and an increase in the herbaceous plants' height in communities along a river gradient. There was also a shift in the dispersal syndromes, towards a higher importance of zoochory in the lower reaches.</p> <p>4. The functional richness and divergence displayed unimodal patterns of increasing values in the mid-reaches. The patterns of taxonomic diversity were similar, but some plots in the lowest reaches were more diverse than expected, forming an additional increase in diversity.</p> <p>5. The study shows that plant communities in natural riparian forests show high connectivity along the longitudinal gradient, which along with the environmental gradients creates patterns that are known from theoretical predictions.</p>
Smaller species experience mild adversity under shading in an old-field plant community
<p><strong>Background:</strong> Plant competition experiments commonly suggest that larger species have an advantage, primarily in terms of light acquisition. However, within crowded natural vegetation, where competition evidently impacts fitness, most resident species are relatively small. It remains unclear, therefore, whether the size-advantage observed in controlled experiments is normally realized in habitats where competition is most intense.</p> <p><strong>Methods:</strong> We characterized the light environment and tested for evidence of a size-advantage in competition for light in an old-field plant community composed of herbaceous perennial species. We investigated whether larger species contributed to reduced light penetration (i.e., greater shading), and examined the impact of shade on smaller species by testing whether the abundance and richness of smaller species were lower in plots with less light penetration.</p> <p><strong>Results:</strong> Light penetration in plots ranged from 0.3-72.4%. Plots with a greater mean species height had significantly lower light penetration. Plots with lower light penetration had significantly lower small species abundance and richness. However, the impact of shade on small species abundance and richness was relatively small (R2 values between 8% and 15%) and depended on how we defined "small species". Significant effects were more common when analyses focused on small plant species that reached reproduction; focusing on only flowering plants can clarify patterns.</p> <p><strong>Synthesis: </strong>Our results confirm that light penetration in herbaceous vegetation can be comparable to levels seen in forests, that plots with taller species cast more shade, and that smaller species are less abundant and diverse in plots where light penetration is low. However, variation in mean plot height explained less than 10% of variation in light penetration, and light penetration explained between 5-15% of variation in small species abundance and richness. Coupled with the fact that reproductive small species were present even within the most heavily shaded plots, our results suggest that any advantage in light competition by large species is limited. One explanation is that at least some small species in these communities are shade tolerant. Shade tolerance in predominantly herbaceous communities, particularly among small plant species, requires further research.</p>
Patterns and determinants of plant-derived lignin phenols in coastal wetlands: implications for organic C accumulation
<p>1. As a major plant-derived soil organic carbon (SOC) component, lignin phenols are unique biomarkers that reflect biogeochemical characteristics under different vegetation compositions and climatic zones in coastal wetlands. However, the latitudinal patterns of plant-derived lignin phenols to SOC and their link with the stability and controlling mechanisms remain poorly understood.</p> <p>2. A total of 156 soil samples from 39 sites along a 5000 km coastal transect, were taken to explore the effects of biological and environmental controls on the patterns of lignin phenols. Lignin phenols had contents ranging from 1.91 to 83.3 mg g−1 OC, and a positive correlation was detected in grass-dominated salt marsh, but a weakly negative correlation in mangrove. Positive correlations between SOC or lignin content and C/V or S/V (the cinnamyl- or syringyl-to-vanillyl) ratios were found, while overall negative correlations between SOC or lignin content and (Ad/Al)V or (Ad/Al)S (the acid-to-aldehyde of vanillyl or syringyl units) ratios were detected, respectively, which confirmed the validity of these lignin biomarker degradation parameters.</p> <p>3. Our findings revealed that plant C inputs and monomer ratios directly influenced the capacity of lignin phenols in soils. Lignin content and stabilization was mainly controlled by soil properties (i.e., pH, EC, sand/clay). Mean annual temperature (MAT) influenced the patterns of lignin phenols both directly by increasing decomposition and indirectly by changing the vegetation and soil biogeochemistry (i.e., microbial substrate availability).</p> <p>4. Coastal wetlands are characterized by high primary productivity and C burial rate, yet plant-derived lignin phenols are not as much as we thought compared to microbial residues C. Precise identification and quantification of the origin, decomposition, and determinants of lignin phenols help us understand their contribution to C sequestration and its response to climate and environmental changes.</p>
Dataset related to article: Differential effect of climate of origin and cultivation climate on structural and biochemical plant traits
<p><span>Exploring patterns and causes of intraspecific trait variation is crucial for a better understanding of the effects of climate change on plant populations and ecosystems. However, our current understanding of the intraspecific trait variation is mainly based on structural (morphological) traits, and we have limited knowledge on patterns and causes of variation in biochemical traits (e.g., leaf pigments), which are also crucial for plant adaptation. As a result, we also do not know how similar the climatic effects on structural versus biochemical traits are. </span></p> <p><span>Using plant traits from 110 genotypes representing 11 <em>Festuca</em> <em>rubra</em> populations grown in 4 different climates, we studied trait covariation among structural traits (linked to fitness, resource use, gas exchange, and reproduction) and biochemical traits (linked to photosynthesis, photoprotection, and oxidative stress). We also disentangled the relative role of the climate of origin and the climate of cultivation in the structural versus biochemical traits and tested for adaptive plasticity in the traits. </span></p> <p><span>We found that 1) biochemical traits did not covary with structural traits and represent independent '<em>photoharvesting</em> – <em>photoprotection</em>' strategy dimension of functional variation; 2) interactive effects of climate of origin and cultivation were more pronounced for biochemical than structural traits</span>. 3) T<span>rait plasticity was affected by the climate of origin (</span>precipitation and temperature as well as their interaction<span>); 4) </span><em>F. rubra</em> showed both adaptive and mal-adaptive plasticity, and adaptiveness depended upon trait type, cultivation climate, and climate of origin.</p> <p><span>Overall, our results suggest that structural and biochemical plant traits respond differentially to climate and thus the response of one group of traits cannot be predicted from the other. Responses are also strongly determined by interactions between the climate of origin and cultivation. Thus, more studies on variation in biochemical traits, their correspondence to other traits, and their variation with climate are needed. </span></p>
High species turnover and unique plant–pollinator interactions make a hyperdiverse mountain
<p>1. We studied α- and β-diversity of pollinators, flowering plants, and plant–pollinator interactions along the altitudinal gradient of Mt. Olympus, a legendary mountain and biodiversity hotspot in Central Greece.</p> <p>2. We explored ten study sites located on the north-eastern slope of the mountain, from 327 to 2,596 m a.s.l. Insect surveys were conducted once a month using hand netting (years 2013, 2014, and 2016), and they were combined with recordings of flowering plant diversity (species richness and flower cover). We then calculated α- and β-diversity of pollinators, plants in flower, and plant–pollinator interactions, and explored their demographic response along the altitudinal gradient.</p> <p>3. Alpha‐diversity of pollinators, plants, and plant–pollinator interactions were altitude-dependent; α‐diversity of all pollinators, bees, non-bumblebee bees, bee flies, and butterflies showed linear declines with altitude, whereas those of hoverflies and bumblebees showed unimodal patterns. Beta-diversity and its turnover component of all pollinators, hoverflies, bees, bumblebees, non-bumblebee bees, butterflies, and plants showed linear increases, whereas those of bee flies and of plant–pollinator interactions varied independently from the pairwise altitudinal difference.</p> <p>4. The high dissimilarity and uniqueness of pollination networks, which is probably a result of the high biodiversity and endemism of Mt. Olympus, is driven by species turnover and the formation of new interactions between new species. Contrasting to the monotonic decline of the remaining groups, the unimodal patterns of hoverfly and bumblebee α‐diversity are probably the effect of a higher tolerance of these groups to high-altitude environmental conditions. Our findings highlight that the high turnover of species and of pollination interactions along the altitudinal gradient is the mainstay of hyperdiverse mountains, a fact that conveys important historical, ecological, and conservational implications.</p>
Dataset of paper "Growth and prevalence of antibiotic-resistant bacteria in microplastic biofilm from wastewater treatment plant effluents"
<p>Dataset of paper "Growth and prevalence of antibiotic-resistant bacteria in microplastic biofilm from wastewater treatment plant effluents":</p> <ul> <li>Raw 16srRNA forward and reverse sequence data</li> <li>16srRNA partial sequence data for submission to public database</li> <li>Nucleotide BLAST result from National Centre of Biotechnology Information (NCBI) database</li> <li>Summary of sample metadata and bacterial colony forming units (CFUs)</li> <li>Summary of sample metadata and quantified genes</li> </ul>
Genomic evidence for contrasting patterns of host‐associated genetic differentiation across shared host‐plant species in leaf‐ and bud‐galling sawflies
<p>Resource specialization and host-associated genetic differentiation (HAD) are frequently invoked as an explanation for the high diversity of plant-feeding insects and other organisms with a parasitic lifestyle. While genetic studies have demonstrated numerous examples of HAD in insect herbivores, the general rarity of comparative studies means that we still lack an understanding of how deterministic HAD is, and whether patterns of host shifts can be predicted over evolutionary time scales. We applied genome-wide SNP data obtained through low-coverage genome resequencing to define species limits and to compare host-plant use in population samples of leaf- and bud-galling sawflies collected from seven shared willow (<em>Salix</em>) host species. To infer the repeatability of long-term cophylogenetic patterns, we also contrasted the phylogenies of the two galler groups with each other as well as with the phylogeny of their <em>Salix</em> hosts estimated based on RADseq data. We found clear evidence for host specialization and HAD in both of the focal galler groups, but also that leaf gallers are more specialized to single host species than are most bud gallers. In contrast to bud gallers, leaf gallers also exhibit statistically significant cophylogenetic signal with their <em>Salix</em> hosts. The observed discordant patterns of resource specialization and long-term host use in two related galler groups that have radiated in parallel across a shared resource base indicate a general lack of evolutionary repeatability and suggest that short- and long-term host use and ecological diversification in plant-feeding insects are dominated by stochasticity and/or lineage-specific effects.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.