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865 results for “Mitochondrial genomes”
FIGURE 7 in Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini)
FIGURE 7. Comparison of AT-skews and GC-skews of Eneopterinae and Gryllinae.
FIGURE 5 in Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini)
FIGURE 5. Map of the mitochondrial genome of Cardiodactylus muiri Otte, 2007.
FIGURE 3 in An additional record of Fejervarya manoharani Garg and Biju from the Western Ghats with a description of its complete mitochondrial genome
FIGURE 3. Phylogenetic tree (ML) constructed based on 839 bp mtDNA (16S and 12S) gene sequences.
Supplementary dataset for "Plasticity of repetitive sequences demonstrated by the complete mitochondrial genome of Eucalyptus camaldulensis"
Open the record for dataset details and reuse information.
Supplementary material 1 from: Wang J, Tai J, Zhang W, He K, Lan H, Liu H (2023) Comparison of seven complete mitochondrial genomes from Lamprologus and Neolamprologus (Chordata, Teleostei, Perciformes) and the phylogenetic implications for Cichlidae. ZooKeys 1184: 115-132. https://doi.org/10.3897/zookeys.1184.107091
Summary of the mitochondrial genomes used for phylogenetic analysis
Figure 5 from: Zheng L-P, Geng Y-M (2024) Complete mitochondrial genome of Guigarra cailaoensis Wang, Chen & Zheng, 2022 (Cypriniformes, Cyprinidae) and its phylogenetic implications. ZooKeys 1190: 75-89. https://doi.org/10.3897/zookeys.1190.113808
Figure 5 Phylogenetic tree of Guigarra cailaoensis and 72 species downloaded from GenBank based on PCG sequences of complete mitogenome combined with ncDNA (Rag1) sequences (dataset 2). Nodal numbers are ML bootstrap values and BI posterior probability values, respectively. Only values above 50% are given.
Figure 4 from: Zheng L-P, Geng Y-M (2024) Complete mitochondrial genome of Guigarra cailaoensis Wang, Chen & Zheng, 2022 (Cypriniformes, Cyprinidae) and its phylogenetic implications. ZooKeys 1190: 75-89. https://doi.org/10.3897/zookeys.1190.113808
Figure 4 Phylogenetic tree of Guigarra cailaoensis and 98 species downloaded from GenBank based on PCG sequences of complete mitogenomes (dataset 1). Nodal numbers are ML bootstrap values and BI posterior probability values, respectively. Only values above 50% are given.
Figure 6 from: Zheng L-P, Geng Y-M (2024) Complete mitochondrial genome of Guigarra cailaoensis Wang, Chen & Zheng, 2022 (Cypriniformes, Cyprinidae) and its phylogenetic implications. ZooKeys 1190: 75-89. https://doi.org/10.3897/zookeys.1190.113808
Figure 6 Phylogenetic tree of Guigarra cailaoensis and 72 species downloaded from GenBank based on ncDNA (Rag1) sequences (dataset 3). Nodal numbers are ML bootstrap values and BI posterior probability values, respectively. Only values above 50% are given.
Figure 2 from: Xu Y, Zeng S, Meng Y, Yang D, Yang S (2024) The mitochondrial genome of Hua aristarchorum (Heude, 1889) (Gastropoda, Cerithioidea, Semisulcospiridae) and its phylogenetic implications. ZooKeys 1192: 237-255. https://doi.org/10.3897/zookeys.1192.116269
Figure 2 Amino acid composition (a) and relative synonymous codon usage (b) of the H. aristarchorum mitogenome. The codon families are provided under the x-axis.
Figure 3 from: Xu Y, Zeng S, Meng Y, Yang D, Yang S (2024) The mitochondrial genome of Hua aristarchorum (Heude, 1889) (Gastropoda, Cerithioidea, Semisulcospiridae) and its phylogenetic implications. ZooKeys 1192: 237-255. https://doi.org/10.3897/zookeys.1192.116269
Figure 3 Nucleotide diversity analysis (a) and Ka/Ks rates (b) of 13 PCGs based on nine Semisulcospiridae species. The Pi values for the 13 PCGs is shown in the graph, with the PCGs in gray, rRNAs in orange, and tRNAs in blue. The black line represents the value of nucleotide diversity (Pi) (window size = 100 bp, step size = 20 bp). The blue, orange and gray columns represent the Ks, Ka and Ka/Ks values, respectively.
Figure 5 from: Xu Y, Zeng S, Meng Y, Yang D, Yang S (2024) The mitochondrial genome of Hua aristarchorum (Heude, 1889) (Gastropoda, Cerithioidea, Semisulcospiridae) and its phylogenetic implications. ZooKeys 1192: 237-255. https://doi.org/10.3897/zookeys.1192.116269
Figure 5 Phylogenetic tree (BI) of Cerithioidea species inferred from dataset I AA (a), II PCG123 (b) and III PCG12 (c). The numbers at the internodes represent maximum likelihood (ML) bootstrap (BS) and Bayesian inference (BI) posterior probabilities (PP). The GenBank accession numbers used are listed after the species names. The scale bar indicates the number of substitutions per site. Note: H. aristarchorum is highlighted in red.
Figure 1 from: Xu Y, Zeng S, Meng Y, Yang D, Yang S (2024) The mitochondrial genome of Hua aristarchorum (Heude, 1889) (Gastropoda, Cerithioidea, Semisulcospiridae) and its phylogenetic implications. ZooKeys 1192: 237-255. https://doi.org/10.3897/zookeys.1192.116269
Figure 1 Gene map of the H. aristarchorum mitogenome. The photo in the middle is the studied specimen of H. aristarchorum (photograph by Yuanzheng Meng). The innermost and middle circles depict the GC content and distribution of the sequencing depth, respectively. The outermost circle represents the arrangement of genes: inner genes from the forward strand, and outer genes from the reverse strand, with the protein-coding genes (PCGs) in green, ribosomal RNAs (rRNAs) in orange, and transfer RNA genes (tRNAs) in red.
Supplementary material 1 from: Xu Y, Zeng S, Meng Y, Yang D, Yang S (2024) The mitochondrial genome of Hua aristarchorum (Heude, 1889) (Gastropoda, Cerithioidea, Semisulcospiridae) and its phylogenetic implications. ZooKeys 1192: 237-255. https://doi.org/10.3897/zookeys.1192.116269
Supplementary information
Figure 4 from: Xu Y, Zeng S, Meng Y, Yang D, Yang S (2024) The mitochondrial genome of Hua aristarchorum (Heude, 1889) (Gastropoda, Cerithioidea, Semisulcospiridae) and its phylogenetic implications. ZooKeys 1192: 237-255. https://doi.org/10.3897/zookeys.1192.116269
Figure 4 The mitochondrial genome composition and arrangement of Semisulcospiridae. The PCGs are colored based on their functional group (dark blue represents COX1-3, light blue corresponds to ND1-6, pink indicates CYTB and yellow signifies ATP6 and ATP8), rRNAs (12S and 16S) are represented by gray modules, and the positions of the tRNAs are portrayed using their single-letter amino acid code (green modules). The non-coding region is not displayed. Note: H. aristarchorum is highlighted in red.
Supplementary material 3 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
List of PCR primers and sequencing primers used in this study
Supplementary material 7 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Maximum Likelihood tree were inferred from the datasets COI + Cytb + 28S-D2 using IQ-tree
Supplementary material 4 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Summary of taxonomic groups used in Fig. 8
Supplementary material 6 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Predicted folding pattern for tRNAs of Synergus nanlingensis mitochondrial genome
Figure 8 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 8 Bayesian analysis of the MAFFT alignment data set inferred from the COI + Cytb + 28S-D2 data sets. Posterior probabilities are shown at each node.
Figure 6 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 6 Structures of control regions in the mitogenome of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. Abbreviation: NTR, nontandem repeat. Yellow shows A + T-rich regions.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.