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2,315 results for “maintainability”
Woodpeckers and other excavators maintain the diversity of cavity-nesting vertebrates
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Data from: Genetic diversity maintained among fragmented populations of a tree undergoing range contraction
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Data from: Deployment of organic farming at a landscape scale maintains low pest infestation and high crop productivity in vineyards
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Maintaining historic disturbance regimes increases species’ resilience to catastrophic hurricanes
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Data from: Spatial structure maintains diversity of pyocin inhibition in household Pseudomonas aeruginosa
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Data from: A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress
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Acquisition of object-robbing and object/food-bartering behaviors: A culturally maintained token economy in free-ranging long-tailed macaques
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Maintaining genetic integrity with high promiscuity: Frequent hybridization with low introgression in multiple hybrid zones of Melocactus(Cactaceae)
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Conserved islands of divergence associated with adaptive variation in sockeye salmon are maintained by multiple mechanisms
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Quina retouch does not maintain edge angle over reduction - R code and data
<p>R code and data used in the paper "Quina retouch does not maintain edge angle over reduction" in <em>Lithic Technology</em>.</p>
Supplementary materials for: Female‐female aggression in a cooperatively breeding bird during the non‐breeding period: The behavioral strategy to maintain long‐term partnerships
<p>Social monogamy evolves in association with biparental care. However, males who tend to pursue multiple mating are expected to place less value on established partnerships, whereas females do the opposite to ensure males'participation in rearing offspring. Accordingly, selection is expected to favor paired females to behave aggressively towards females that approach their social mates. For species with long-term partnerships, female-female aggression commonly observed during the breeding period should also occur in the non-breeding period. We look at whether these expectations are held up by conducting a field experiment in Tibetan ground tits Pseudopodoces humilis, a cooperatively breeding bird that has lifetime monogamy and forms new pair bonds in winter. Paired but not unpaired females were more aggressive towards the same-sex than towards opposite-sex intruders experimentally introduced into the winter group territory, an indication that paired females may be protecting partnerships. Both paired and unpaired males, on the other hand, displayed aggression almost equally against intruders of both sexes, indicating a likely function in territory defense. Our work provides the first evidence for the female's role in maintaining long-term monogamy during the non-breeding period in birds, and contributes to the recent progress regarding intrasexual competition between females as a component of sexual selection.</p>
Large herbivores maintain a two-phase herbaceous vegetation mosaic in a semi-arid savanna
<ol> <li>Many arid and semi-arid rangelands exhibit distinct spatial patterning of vegetated and bare-soil-dominated patches. The latter potentially represent a grazing-induced, degraded ecosystem state, but could also arise via mechanisms related to feedbacks between vegetation cover and soil moisture availability that are unrelated to grazing. The degree to which grazing contributes to the formation or maintenance of degraded patches has been widely discussed and modelled, but empirical studies of the role of grazing in their formation, persistence, and reversibility are limited. </li> <li>We report on a long-term (17 yr) grazing removal experiment in a semi-arid savanna where vegetated patches composed of perennial grasses were interspersed within large (>10 m<sup>2</sup>) patches of bare soil. </li> <li>Short term (3 yr) grazing removal did not allow bare patches to become revegetated, whereas following long-term (17 yr) grazing removal, bare soil patches were revegetated by a combination of stoloniferous grasses and tufted bunchgrasses. In the presence of grazers, stoloniferous grasses partially recolonized bare patches, but this did not lead to full recovery or to the establishment of tufted bunchgrasses. </li> <li>These results show that grazers alter both the balance between bare and vegetated patches, as well as the types of grasses dominating both patch types in this semiarid savanna. </li> <li>Synthesis: Large herbivores fundamentally shaped the composition and spatial pattern of the herbaceous layer by maintaining a two-phase herbaceous mosaic. However, bare patches within this mosaic can recover given herbivore removal over sufficiently long time scales, and hence do not represent a permanently degraded ecosystem state. </li> </ol>
Data from: The role of browsers in maintaining the openness of savanna grazing lawns
<p>1. In savannas, ruminant herbivores can have divergent impacts on tree recruitment and resulting woody cover. Heavy grazing by cattle results in woody thickening, whereas intensive grazing by wildlife instead tends to be associated with lower woody cover.</p> <p>2. To disentangle why woody cover is low in areas heavily grazed by wildlife, we tested (I) whether short-grass environments attract indigenous mammalian browsers; (II) whether preference for short grass decreases with browser body mass because of differences in predator susceptibility; and (III) whether these translate into suppression of seedlings and saplings on grazing lawns, thus maintaining their openness.</p> <p> 3. This work was conducted in Kruger National Park (KNP) and Hluhluwe iMfolozi Park (HiP), South Africa. In KNP, the effect of grass height on browser abundance (estimated using dung counts), and on the utilisation of woody plants by browsers (using a bite-score approach) was tested. An exclosure experiment tested the effect of grass height and browser removal on seedling survival and sapling growth of a dominant woody plant species in a short- and tall-grass mosaic. Finally, in HiP, the effect of grass height and browser removal were tested on the growth rates of a range of woody species, monitored over ten years, across ten sites.</p> <p>4. Steenbok and impala selected short- over tall-grass as preferred browsing sites, while elephant preferred tall grass. Browser abundance on short grass decreased with browser body mass, indicating that predator avoidance might be a key factor driving small-bodied browsers to utilize grazing lawns. Grass height did not explain variation in the utilisation of woody plants by browsers.</p> <p>5. Seedling survival was lowest in short grass and when browsers were present, with mortality occurring in two out of every three seedlings. Also, sapling growth was lowest in short grass, although browser removal had no effect. Evidence for increased browser impact on grazing lawns was clearest from our long-term exclosure experiment in HiP, which demonstrated that the effect of browsers on sapling growth rates was strongly modified by the presence of short grass.</p> <p>6. <i>Synthesis</i>. These results provide support for the hypothesis that browsers, particularly small-bodied browsers and mixed feeders, are attracted to short-grass habitats, and that, they help maintain grazing lawn openness by suppressing woody seedling survival and sapling growth where grass is kept short by grazers.</p>
What evolutionary processes maintain MHCIIβ diversity within and among populations of stickleback?
<p>Major Histocompatibility Complex (MHC) genes encode for proteins that recognize foreign protein antigens to initiate T-cell mediated adaptive immune responses. They are often the most polymorphic genes in vertebrate genomes. How evolution maintains this diversity is still an unsettled issue. Three main hypotheses seek to explain the maintenance of MHC diversity by invoking pathogen-mediated selection: heterozygote advantage, frequency-dependent selection, and fluctuating selection across landscapes or through time. Here, we use a large-scale field parasite survey in a stickleback metapopulation to test predictions derived from each of these hypotheses. We identify over a thousand MHCIIβ variants (alleles spanning paralogous genes) and find that many of them covary positively or negatively with parasite load, suggesting that these genes contribute to resistance or susceptibility. However, despite our large sample-size, we find no evidence for the widely-cited stabilizing selection on MHC heterozygosity, in which individuals with an intermediate number of MHC variants have the lowest parasite burden. Nor do we observe a rare-variant advantage, or widespread fluctuating selection across populations. In contrast, we find that MHC diversity is best predicted by neutral genome-wide heterozygosity and between-population genomic divergence, suggesting neutral processes are important in shaping the pattern of metapopulation MHC diversity. Thus, although MHCIIβ is highly diverse and relevant to the type and intensity of macroparasite infection in these populations of stickleback, the main models of MHC evolution still provide little explanatory power in this system.</p>
Data from: Coralline algae in a naturally acidified ecosystem persist by maintaining control of skeletal mineralogy and size
To understand the effects of ocean acidification (OA) on marine calcifiers, the trade-offs among different sublethal responses within individual species and the emergent effects of these trade-offs must be determined in an ecosystem setting. Crustose coralline algae (CCA) provide a model to test the ecological consequences of such sublethal effects as they are important in ecosystem functioning, service provision, carbon cycling and use dissolved inorganic carbon to calcify and photosynthesize. Settlement tiles were placed in ambient pH, low pH and extremely low pH conditions for 14 months at a natural CO2 vent. The size, magnesium (Mg) content and molecular-scale skeletal disorder of CCA patches were assessed at 3.5, 6.5 and 14 months from tile deployment. Despite reductions in their abundance in low pH, the largest CCA from ambient and low pH zones were of similar sizes and had similar Mg content and skeletal disorder. This suggests that the most resilient CCA in low pH did not trade-off skeletal structure to maintain growth. CCA that settled in the extremely low pH, however, were significantly smaller and exhibited altered skeletal mineralogy (high Mg calcite to gypsum (hydrated calcium sulfate)), although at present it is unclear if these mineralogical changes offered any fitness benefits in extreme low pH. This field assessment of biological effects of OA provides endpoint information needed to generate an ecosystem relevant understanding of calcifying system persistence.
Data from: Divergence maintained by climatic selection despite recurrent gene flow: a case study of Castanopsis carlesii (Fagaceae)
Local adaptation to different environments has the potential to maintain divergence between populations despite recurrent gene flow and is an important driver for generating biological diversity. In this study, we investigate the role of adaptation in the maintenance of two parapatric varieties of a forest tree. We used sequence variation of chloroplastic DNA and restriction site-associated DNA to investigate the genetic structure of two varieties of Castanopsis carlesii in subtropical China and relate it to climatic variation. We used niche reconstruction methods to investigate niche differentiation between the two varieties and to estimate the past distribution of this species. A deep divergence was observed between the two varieties, but evidence of introgression and genetic admixture was detected in two phenotypically and geographically intermediate populations. Niche reconstruction suggests that the distribution of the two varieties was disjunct during periods of global cooling and that the two varieties occupy significantly different niches. The genetic structure was mainly driven by environmental factors, and 13 outlier loci under divergent selection were correlated with climatic variation. These results suggest that the two varieties evolved in allopatry and came back into secondary contact after the last glacial maximum and that they are an evolutionary example of divergence maintained by climatic selection despite recurrent gene flow.
Data from: Using genomic tools to maintain diversity and fitness in conservation programmes
Conservation programmes aim at maximising the survival probability of populations, by minimising the loss of genetic diversity, which allows populations to adapt to changes, and controlling inbreeding increases. The best known strategy to achieve these goals is optimising the contributions of the parents, to minimise global coancestry in their offspring. Results on neutral scenarios showed that management based on molecular coancestry could maintain more diversity than management based on genealogical coancestry when a large number of markers is available. However, if the population has deleterious mutations, managing using optimal contributions can lead to a decrease in fitness, especially using molecular coancestry, because both beneficial and harmful alleles are maintained, compromising the long-term viability of the population. We introduce here two strategies to avoid this problem: The first one uses molecular coancestry calculated removing markers with low minor allele frequencies, as they could be linked to selected loci. The second one uses a coancestry based on segments of identity by descent, which measures the proportion of genome segments shared by two individuals because of a common ancestor. We compare these strategies under two contrasting mutational models of fitness effects, one assuming many mutations of small effect and another with few mutations of large effect. Using markers at intermediate frequencies maintains a larger fitness than using all markers, but leads to maintaining less diversity. Using the segment-based coancestry provides a compromise solution between maintaining diversity and fitness, especially when the population has some inbreeding load.
Data from: Exotic flies maintain pollination services as native pollinators decline with agricultural expansion
1.Globally, conversion of natural habitat to agricultural land is a primary driver of declines in critical ecosystem services, including pollination. However, exotic species are often well-adapted to human-modified environments and could compensate for ecosystem services that are lost when native species decline. 2.We measured pollination services (pollen delivery to stigma) provided by wild insects to a mass flowering crop, pak choi Brassica rapa at 12 sites across a gradient of increasing agricultural land use (agricultural expansion) in New Zealand. 3.We found that pollination services increased as the proportion of agricultural land in the surrounding landscape increased; pollination from exotic species exceeded the loss of pollination from native species. However, pollination service delivery became increasingly dominated by a few exotic fly species that were active throughout the day, compared to native species, which had more constrained activity patterns. 4.Synthesis and applications. The best way to ensure continued sufficient crop pollination is to protect and restore diverse natural habitats on or around farms, as species-rich pollinator communities are relatively resilient to further environmental change. However, we show that where human-driven disturbance has caused loss of native pollinator species, exotic pollinators can maintain sufficient pollination. Therefore, in areas where native species loss cannot easily be reversed, decisions about pesticide use and habitat provision that foster populations of beneficial exotic species are likely to maintain pollination service delivery, at least in the short term. This highlights the need for land managers to identify the pollinator communities that are present on their farms, whether native or exotic, and make decisions to support these important communities accordingly.
Data from: Balancing selection for aflatoxin in Aspergillus flavus is maintained through interference competition with, and fungivory by insects
The role of microbial secondary metabolites in the ecology of the organisms that produce them remains poorly understood. Variation in aflatoxin production by Aspergillus flavus is maintained by balancing selection, but the ecological function and impact on fungal fitness of this compound are unknown. We hypothesize that balancing selection for aflatoxin production in A. flavus is driven by interaction with insects. To test this, we competed naturally occurring aflatoxigenic and non-aflatoxigenic fungal isolates against Drosophila larvae on medium containing 0–1750 ppb aflatoxin, using quantitative PCR to quantify A. flavus DNA as a proxy for fungal fitness. The addition of aflatoxin across this range resulted in a 26-fold increase in fungal fitness. With no added toxin, aflatoxigenic isolates caused higher mortality of Drosophila larvae and had slightly higher fitness than non-aflatoxigenic isolates. Additionally, aflatoxin production increased an average of 1.5-fold in the presence of a single larva and nearly threefold when the fungus was mechanically damaged. We argue that the role of aflatoxin in protection from fungivory is inextricably linked to its role in interference competition. Our results, to our knowledge, provide the first clear evidence of a fitness advantage conferred to A. flavus by aflatoxin when interacting with insects.
Data from: Hill-Robertson interference maintained by red queen dynamics favours the evolution of sex
Although it is well established theoretically that selective interference among mutations (Hill-Robertson interference) favours meiotic recombination, genome-wide mean rates of mutation and strengths of selection appear too low to support this as the mechanism favouring recombination in nature. A possible solution to this discrepancy between theory and observation is that selection is at least intermittently very strong due to the antagonistic coevolution between a host and its parasites. The Red Queen theory posits that such coevolution generates fitness epistasis among loci, which generates negative linkage disequilibrium among beneficial mutations, which in turn favours recombination. This theory has received only limited support. However, Red Queen dynamics without epistasis may provide the ecological conditions that maintain strong and frequent selective interference in finite populations that indirectly selects for recombination. This hypothesis is developed here through the simulation of Red Queen dynamics. This approach required the development of a method to calculate the exact frequencies of multi-locus haplotypes after recombination. Simulations show that recombination is favoured by the moderately weak selection of many loci involved in the interaction between a host and its parasites, which results in substitution rates that are compatible with empirical estimates. The model also reproduces the previously reported rapid increase in the rate of outcrossing in Caenorhabditis elegans coevolving with a bacterial pathogen.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.