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ShareScore release 0.7.1
Dataset results
915 results for “metagenomics”
Supplementary material 1 from: Cros M-J, Frigerio J-M, Peyrard N, Franc A (2024) Simple approaches for evaluation of OTU quality based on dissimilarity arrays. Metabarcoding and Metagenomics 8: e108649. https://doi.org/10.3897/mbmg.8.108649
Supplementary information
Exploring the Roles of Ribosomal Peptides in Prokaryote-Phage Interactions through Deep Learning-Enabled Metagenome Mining
<ol> <li><a href="../api/records/10202404/draft/files/OVD.fa.gz/content">OVD.fa.gz: The Ocean Virus Database containing the identified viral sequences</a></li> </ol> <p><a href="../api/records/8138131/draft/files/OVD_taxonomy.upload.txt/content">2. OVD_taxonomy.upload.txt: The taxonomic information of the OVD.</a></p> <p>3. <a href="../api/records/8138131/draft/files/host_phage_pair_summary.upload.txt/content">host_phage_pair_summary.upload.txt: The phage-host relationships.</a></p> <p>4. <a href="../api/records/8138131/draft/files/RiPP_vpf_host_phage_summary.upload.txt/content">RiPP_vpf_host_phage_summary.upload.txt: The RiPP-involving phage-host interaction network.</a></p> <p>5. virus_db_checkv_quality_summary_upload.tsv: The quality assessment of GOV2 and the identified phages in this study using CheckV.</p>
Metagenome Assembled Genome for Planticonsortium tenu (FRE)
Open the record for dataset details and reuse information.
Nanomotif: Identification and Exploitation of DNA Methylation Motifs in Metagenomes using Oxford Nanopore Sequencing
Open the record for dataset details and reuse information.
Supplementary material 2 from: Sildever S, Laas P, Kolesova N, Lips I, Lips U, Nagai S (2021) Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study. Metabarcoding and Metagenomics 5: e72371. https://doi.org/10.3897/mbmg.5.72371
Supplementary tables
Supplementary material 1 from: Sildever S, Laas P, Kolesova N, Lips I, Lips U, Nagai S (2021) Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study. Metabarcoding and Metagenomics 5: e72371. https://doi.org/10.3897/mbmg.5.72371
Supplementary figures
Supplementary material 4 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Figure S2
Supplementary material 3 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Figure S1
Supplementary material 2 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Table S2
Supplementary material 1 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Table S1
Supplementary material 1 from: Radulovici AE, Vieira PE, Duarte S, Teixeira MAL, Borges LMS, Deagle BE, Majaneva S, Redmond N, Schultz JA, Costa FO (2021) Revision and annotation of DNA barcode records for marine invertebrates: report of the 8 th iBOL conference hackathon. Metabarcoding and Metagenomics 5: e67862. https://doi.org/10.3897/mbmg.5.67862
Figure S1 and Tables S1–S10
Supplementary material 2 from: Boukhdoud L, Saliba C, Parker LD, McInerney NR, Kahale R, Saliba I, Maldonado JE, Kharrat MBD (2021) Using DNA metabarcoding to decipher the diet plant component of mammals from the Eastern Mediterranean region. Metabarcoding and Metagenomics 5: e70107. https://doi.org/10.3897/mbmg.5.70107
Appendix 2
Supplementary material 1 from: Boukhdoud L, Saliba C, Parker LD, McInerney NR, Kahale R, Saliba I, Maldonado JE, Kharrat MBD (2021) Using DNA metabarcoding to decipher the diet plant component of mammals from the Eastern Mediterranean region. Metabarcoding and Metagenomics 5: e70107. https://doi.org/10.3897/mbmg.5.70107
Appendix 1
Supplementary material 1 from: Leite BR, Vieira PE, Troncoso JS, Costa FO (2021) Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates. Metabarcoding and Metagenomics 5: e70063. https://doi.org/10.3897/mbmg.5.70063
Table S1, Figures S1–S5
Supplementary material 2 from: Leite BR, Vieira PE, Troncoso JS, Costa FO (2021) Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates. Metabarcoding and Metagenomics 5: e70063. https://doi.org/10.3897/mbmg.5.70063
Tables S2, S3
Supplementary material 2 from: Van den Bulcke L, De Backer A, Ampe B, Maes S, Wittoeck J, Waegeman W, Hostens K, Derycke S (2021) Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection. Metabarcoding and Metagenomics 5: e71107. https://doi.org/10.3897/mbmg.5.71107
Tables S1–S8
Supplementary material 1 from: Van den Bulcke L, De Backer A, Ampe B, Maes S, Wittoeck J, Waegeman W, Hostens K, Derycke S (2021) Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection. Metabarcoding and Metagenomics 5: e71107. https://doi.org/10.3897/mbmg.5.71107
Figures S1–S14
Supplementary material 1 from: Brasell KA, Pochon X, Howarth J, Pearman JK, Zaiko A, Thompson L, Vandergoes MJ, Simon KS, Wood SA (2022) Shifts in DNA yield and biological community composition in stored sediment: implications for paleogenomic studies. Metabarcoding and Metagenomics 6: e78128. https://doi.org/10.3897/mbmg.6.78128
Figures S1–S4
Supplementary material 2 from: Brasell KA, Pochon X, Howarth J, Pearman JK, Zaiko A, Thompson L, Vandergoes MJ, Simon KS, Wood SA (2022) Shifts in DNA yield and biological community composition in stored sediment: implications for paleogenomic studies. Metabarcoding and Metagenomics 6: e78128. https://doi.org/10.3897/mbmg.6.78128
Table S1
Supplementary material 1 from: Nagai S, Sildever S, Nishi N, Tazawa S, Basti L, Kobayashi T, Ishino Y (2022) Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding. Metabarcoding and Metagenomics 6: e77704. https://doi.org/10.3897/mbmg.6.77704
Table S1–S3
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.