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865 results for “Mitochondrial genomes”
Figure 4 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 4 Mitochondrial genome of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. sequenced in this study. Genes outside the circle are encoded by the majority strand, and genes inside are encoded by the minority strand. The tRNA genes are indicated by their one-letter corresponding amino acids. The GC content is plotted using a black sliding window. Abbreviations: atp6 and atp8, ATP-synthase subunits 6 and 8; cob, cytochrome b; cox1–3, cytochrome oxidase subunits 1–3; nad1–6 and nad4L, NADH dehydrogenase subunits 1–6 and 4 L; rrnL and rrnS, large and small rRNA subunits.
Figure 7 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 7 Mitochondrial genome organization and gene rearrangement in Synergus nanlingensis Wang & Zeng, 2023, sp. nov. compared with the ancestral type of the insect mitochondrial genome. All abbreviations are the same as in Table 1 in the main text. Arrow pointing to the right represents the J-strand and arrow pointing to the left represents the N-strand. Genes are drawn in their original order; intergenic distances are not included, and sizes of genes are not to scale. Yellow boxes indicate genes with different positions from two control regions reported in Cynipidae. and white boxes indicate genes that are different in terms of both position and strand associations from the putative ancestral pattern. Gray boxes show conserved gene blocks.
Figure 5 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 5 Relative synonymous codon usage (RSCU) of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. mitochondrial genome. Codon families are labeled on the x-axis. Values on the top of the bars indicate the percentage of each amino acid used for the construction of 13 protein-coding genes (PCGs).
Supplementary material 5 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Pair-wise COI sequence distances in Synergus
Supplementary material 2 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
List of PCR primers used in this study
Figure 1 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 1 Synergus nanlingensis Wang & Zeng, 2023, sp. nov. a general habitus (♀) b general habitus (♂) c antenna (♀) d antenna (♂) e head in anterior view (♀) f head in anterior view (♂) g head in dorsal view (♀) h head in dorsal view (♂).
Figure 2 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 2 Synergus nanlingensis Wang & Zeng, 2023, sp. nov. a head in lateral view (♀) b fore wing (♀) c head in posterior view (♀) d mesosoma, lateral view (♀) e mesosoma, dorsal view (♀) f propodeum, dorsal view (♀) g metasoma, lateral view (♀) h metasoma, lateral view (♂) i tarsal claw.
Figure 1 from: Cruz BA, Cappelmann A, Chutjian H, Roman JC, Reid MA, Wright J, Gonzalez AD, Keyman T, Griffith KM, Appiah-Madson HJ, Distel DL, Hayes VE, Drewery J, Pettay DT, Staton JL, Brugler MR (2024) Complete mitochondrial genomes of the black corals Alternatipathes mirabilis Opresko & Molodtsova, 2021 and Parantipathes larix (Esper, 1788) (Cnidaria, Anthozoa, Hexacorallia, Antipatharia, Schizopathidae). ZooKeys 1196: 79-93. https://doi.org/10.3897/zookeys.1196.116837
Figure 1 Maximum Likelihood phylogenetic tree, based on 13 protein-coding genes and two ribosomal RNAs (42 taxa and 16,416 sites). The mitogenomes of Alternatipathes mirabilis (USNM1070972; OR398473) and Parantipathes larix (USNM1280881; OR398474) are indicated with three asterisks. The families Aphanipathidae and Cladopathidae are polyphyletic with representatives indicated with a horizontal dotted line. The tree is rooted internally to the Leiopathidae. Node support values are based on 1,000 ultrafast bootstrap replicates. Species IDs are followed by museum voucher codes (e.g. USNM) and/or GenBank accession numbers (e.g. MT, NC, ON or SRR).
Figure 3 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 3. Secondary structure of the 22 tRNA genes in Domecia acanthophora.
Supplementary material 1 from: Meng H, Wang Y, Qiao G-X, Chen J (2024) Mitochondrial genome data provide insights into the phylogenetic relationships within Triplophysa dalaica (Kessler, 1876) (Cypriniformes, Nemacheilidae). ZooKeys 1197: 43-55. https://doi.org/10.3897/zookeys.1197.116342
Supplementary data
Figure 1 from: Meng H, Wang Y, Qiao G-X, Chen J (2024) Mitochondrial genome data provide insights into the phylogenetic relationships within Triplophysa dalaica (Kessler, 1876) (Cypriniformes, Nemacheilidae). ZooKeys 1197: 43-55. https://doi.org/10.3897/zookeys.1197.116342
Figure 1 Geographic distribution of the eight Triplophysa dalaica samples. Circles: samples sequenced in this research. Triangle: sample with mitochondrial genome available in NCBI. Squares: samples for which mitochondrial genome assembled using released HTS data from NCBI.
Figure 2 from: Meng H, Wang Y, Qiao G-X, Chen J (2024) Mitochondrial genome data provide insights into the phylogenetic relationships within Triplophysa dalaica (Kessler, 1876) (Cypriniformes, Nemacheilidae). ZooKeys 1197: 43-55. https://doi.org/10.3897/zookeys.1197.116342
Figure 2 A The majority rule consensus tree constructed using MrBayes based on the CDS of 13 mitochondrial PCGs (excluding stop codons) of eight Triplophysa dalaica individuals and outgroup species, totaling 11,427 bp. The topology of the tree closely resembles that constructed by RAxML. Posterior probabilities (from MrBayes) and bootstrap values (from RAxML) for branches are depicted as two different colored rectangles, one above the other B details of the clade containing the eight T. dalaica individuals in the phylogenetic tree. Numerical values on branches represent posterior probabilities and bootstrap values, respectively. The dashes represent values less than 50. The red dots indicate divergence time estimated by MCMC approach with 95% HPD.
Figure 7 from: Zhao W, Liu D, Jia Q, Wu X, Zhang H (2021) Characterization of the complete mitochondrial genome of Myrmus lateralis (Heteroptera, Rhopalidae) and its implication for phylogenetic analyses. ZooKeys 1070: 13-30. https://doi.org/10.3897/zookeys.1070.72742
Figure 7 The phylogenetic relationships of PCG+rRNA using BI and ML methods. Numbers above each node indicate Bayesian posterior probabilities values and ML bootstrap values.
Figure 2 from: Zhao W, Liu D, Jia Q, Wu X, Zhang H (2021) Characterization of the complete mitochondrial genome of Myrmus lateralis (Heteroptera, Rhopalidae) and its implication for phylogenetic analyses. ZooKeys 1070: 13-30. https://doi.org/10.3897/zookeys.1070.72742
Figure 2 The rates of nonsynonymous substitution (Ka), the rates of synonymous substitution (Ks), and the ratio of Ka/Ks for each PCGs of Myrmus lateralis mitogenome
FIGURE 3 in A new species of the genus Tuberfemurus (Orthoptera: Tetrigoidea: Cladonotinae) with comments on the characters of mitochondrial genome
FIGURE 3. Map of the mitochondrial genome of Tuberfemurus viridulus sp. nov..
FIGURE 2 in A new species of the genus Tuberfemurus (Orthoptera: Tetrigoidea: Cladonotinae) with comments on the characters of mitochondrial genome
FIGURE 2. Habitat of Tuberfemurus viridulus sp. nov..
FIGURE 9 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 9. Liara (Liara) shii Liu & Bian sp. nov.. A–B. male; C–D. female.
FIGURE 10 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 10. Male nymph of Liara (Liara) shii Liu & Bian sp. nov..
FIGURE 12 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 12. Habitus of Palaeoagraecia brunnea Ingrisch, 1998 in lateral view. A–B. female.
Figure 4 from: Li W, Qiu N, Du H (2022) Complete mitochondrial genome of Rhodeus cyanorostris (Teleostei, Cyprinidae): characterization and phylogenetic analysis. ZooKeys 1081: 111-125. https://doi.org/10.3897/zookeys.1081.77043
Figure 4 Phylogenetic trees derived from the maximum-likelihood (ML) and neighbor joining (NJ) approaches based on whole mitochondrial genomes. The numbers on the nodes are the bootstrap values of ML and NJ. The number after the species name is the GenBank accession number.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
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