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684 results for “Phylogenetic placement”
Figure 15 from: Petersen RH, Hughes KW (2016) Micromphale sect. Perforantia (Agaricales, Basidiomycetes); Expansion and phylogenetic placement. MycoKeys 18: 1-122. https://doi.org/10.3897/mycokeys.18.10007
Figure 15 - Gymnopus foliiphilus. Caulocystidia from upper stipe. Standard bars = 10 µm. TFB 2800 (TENN-F-49363).
Figure 14 from: Petersen RH, Hughes KW (2016) Micromphale sect. Perforantia (Agaricales, Basidiomycetes); Expansion and phylogenetic placement. MycoKeys 18: 1-122. https://doi.org/10.3897/mycokeys.18.10007
Figure 14 - Gymnopus foliiphilus. Basidiospores. Standard bar = 5 µm. A = TFB 11608 (TENN-F-59641); B = TFB 14322 (TENN-F-68183).
Figure 1 from: Petersen RH, Hughes KW (2016) Micromphale sect. Perforantia (Agaricales, Basidiomycetes); Expansion and phylogenetic placement. MycoKeys 18: 1-122. https://doi.org/10.3897/mycokeys.18.10007
Figure 1 - Gymnopus bulliformis. A, B Basidiomata C, D Basidiospores. Standard bars: A, B = 20 mm; C, D = 5 µm. A, C WTU-F-9305; B, D WTU-F-51955.
Figure 3 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Figure 3 - Maximum likelihood tree from concatenated dataset. Scale bar = 0.2 expected substitutions per position as estimated by RAxML. Stygoporus oregonensis in orange; other stygobitic dytiscids in blue; the epigean genus Sanfilippodytes, hypothesized by Larson and LaBonte (1994) to be the closest relative to Stygoporus oregonensis, in green. Bootstrap support given at nodes for Siettitiina and Stygoporus oregonensis + Ereboporus naturaconservatus.
Figure 2 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Figure 2 - The two known collection localities of Stygoporus oregonensis. Oregon/Washington State boundary in black. County boundaries in brown. Blue shaded region outlined with a dotted line corresponds to Willamette Lowland basin-fill aquifers. Type locality indicated by red star with black border. New collection locality indicated by black star.
Figure 4 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Figure 4 - Majority rule consensus of 1,000 bootstrap replicates performed on concatenated dataset. Bootstrap percentages given for clades recovered with more than 50% support. Branches and taxa colored as in Figure 3.
Figure 3 from: Guzow-Krzemińska B, Jabłońska A, Flakus A, Rodriguez-Flakus P, Kosecka M, Kukwa M (2019) Phylogenetic placement of Lepraria cryptovouauxii sp. nov. (Lecanorales, Lecanoromycetes, Ascomycota) with notes on other Lepraria species from South America. MycoKeys 53: 1-22. https://doi.org/10.3897/mycokeys.53.33508
Figure 3 Haplotype network showing relationships between nucITS rDNA sequences from Leprariafinkii. Newly generated nucITS rDNA sequences are given in bold. The names of species are followed with herbarium numbers of specimens or accession numbers precede species names in case of sequences obtained from Genbank. Mutational changes are presented as numbers in brackets near lines between haplotypes.
Figure 2 from: Guzow-Krzemińska B, Jabłońska A, Flakus A, Rodriguez-Flakus P, Kosecka M, Kukwa M (2019) Phylogenetic placement of Lepraria cryptovouauxii sp. nov. (Lecanorales, Lecanoromycetes, Ascomycota) with notes on other Lepraria species from South America. MycoKeys 53: 1-22. https://doi.org/10.3897/mycokeys.53.33508
Figure 2 Haplotype network showing relationships between nucITS rDNA sequences from selected Lepraria spp. Newly generated nucITS rDNA sequences from L.cryptovouauxii, L.impossibilis and L.sipmaniana were analyzed. The names of species are followed with herbarium numbers of specimens. Mutational changes are presented as numbers in brackets near lines between haplotypes. Haplotypes corresponding to each of species are highlighted with separate elipses. The newly described L.cryptovouauxii is given in bold.
Figure 1 from: Guzow-Krzemińska B, Jabłońska A, Flakus A, Rodriguez-Flakus P, Kosecka M, Kukwa M (2019) Phylogenetic placement of Lepraria cryptovouauxii sp. nov. (Lecanorales, Lecanoromycetes, Ascomycota) with notes on other Lepraria species from South America. MycoKeys 53: 1-22. https://doi.org/10.3897/mycokeys.53.33508
Figure 1 ML tree based on nucITS rDNA dataset for Lepraria spp. with midpoint rooting. Newly sequenced specimens of Lepraria are in bold and their names are followed with collection number of specimens. In case of the sequences obtained from GenBank the taxa names are followed with accession numbers. Bootstrap supports from ML analysis ≥ 70 (first value) and posterior probabilities from BA ≥ 0.95 (second value) are indicated near the branches. The newly described L.cryptovouauxii is highlighted in orange, L.vouauxii is highlighted in blue, and L.neglecta is highlighted in grey.
Figure 4 from: Guzow-Krzemińska B, Jabłońska A, Flakus A, Rodriguez-Flakus P, Kosecka M, Kukwa M (2019) Phylogenetic placement of Lepraria cryptovouauxii sp. nov. (Lecanorales, Lecanoromycetes, Ascomycota) with notes on other Lepraria species from South America. MycoKeys 53: 1-22. https://doi.org/10.3897/mycokeys.53.33508
Figure 4 Morphology of Leprariacryptovouauxii (A−C) and L.nothofagi (D). A Holotype (M. Kukwa 14848a) B Thallus with obscurely lobate margins (Flakus 14814) C Thallus with large and compacted aggregations of granules (Flakus 17682) D Details of thallus (Flakus 17651 & Rodriguez). Scale bars: 500 µm (A−C), 300 µm (D).
Fig. 7 in A redescription of Antispastis clarkei Pastrana (Lepidoptera, Glyphipterigidae) immature stages, with notes on the life history and phylogenetic placement of the genus
Fig. 7. Natural history of Antispastis clarkei on Solanum johannae: A, egg on abaxial surface of S. johannae leaf; B, last larval instar within dissected mine; C, a discharge orifice of a young blotch mine (aperture indicated by arrow) on leaf abaxial surface, surrounded by isolated small fecal pellets; D, young host plant showing leaf mines of varied ages and shapes on adaxial surface of leaves; E, young leaf mines in detail; beginning and end of a first-instar, filiform mine are indicated by closed and open arrows, respectively; asterisk indicates a third instar, blotch mine; dashed and broken lines mark location of histological sections presented in Fig. 8; F, feces embedded in brownish liquid, discharged by a full-grown larva (aperture of orifice also indicated by arrow); G, anterior aperture (asterisk) of cocoon in detail, dorsal; H, a last instar larva seen by transparency (arrow) within a large blotch mine; I, cocoon, general view, with pupa inside, constructed on the wall of a rearing plastic vial in laboratory, lateral. Scale bars = 0.3, 1.5, 20, 40, 15, 20, 0.5, 20, 1 mm, respectively.
Fig. 3 in A redescription of Antispastis clarkei Pastrana (Lepidoptera, Glyphipterigidae) immature stages, with notes on the life history and phylogenetic placement of the genus
Fig. 3. Larval and pupal morphology of Antispastis clarkei under light microscopy: A, last larval instar, under dorsal and ventral views; B, pupa, dorsal, ventral and lateral, respectively. Scale bars = 0.5 mm.
Fig. 6 in A redescription of Antispastis clarkei Pastrana (Lepidoptera, Glyphipterigidae) immature stages, with notes on the life history and phylogenetic placement of the genus
Fig. 6. Scanning electron micrographs of Antispastis clarkei pupa: A, B, head and anterior portion of thorax, lateral and ventral views, respectively; C, cocoon cutter, lateral (indicated by seta in B); D, basal tubercle of forewing, lateral (indicated by closed arrowhead in A); E, latero-dorsal micro-seta of mesothorax, lateral (indicated by open arrowhead in A); F, prothoracic spiracle, dorsal (open arrowhead indicates latero-posterior slit); G, H, spiracles of seventh and eighth abdominal segments, respectively, lateral; I, J, last abdominal segments, dorso-posterior and dorsal, respectively; K, cremaster hooks in detail (enlarged area marked with a rectangle in J); L, latero-dorsal setae of last abdominal segment, posterior (area indicated by closed arrow in I). Scale bars = 250, 200, 30, 30, 20, 30, 30, 20, 150, 100, 20, 10 µm, respectively.
Fig. 1 in A redescription of Antispastis clarkei Pastrana (Lepidoptera, Glyphipterigidae) immature stages, with notes on the life history and phylogenetic placement of the genus
Fig. 1. Maximum likelihood consensus tree for Antispastis Meyrick inferred based on DNA barcode sequences (668 bp of the cytochrome oxidase subunit I gene). Numbers above branches indicate bootstrap support.
Fig. 2 in A redescription of Antispastis clarkei Pastrana (Lepidoptera, Glyphipterigidae) immature stages, with notes on the life history and phylogenetic placement of the genus
Fig. 2. Adult morphology of Antispastis clarkei: A, pinned-dried adult female, dorsal view; B, fore and hind wings, respectively, dorsal (seta points to fused A1+2 on hind wing); C, mouth parts, antero-dorsal (open and closed arrows indicate proboscis and maxillary palpus, respectively; asterisk marks labial palpus); D, vesica in detail, ventral (area marked with rectangle in E); E, male genitalia, ventral; F, corpus bursae, ventral; G, signum in detail (area marked with rectangle in F); H, female genitalia, ventral (open arrow points to missing distal portion of ductus bursae and corpus bursae, broken off during preparation). Scale bars = 1 mm (A, B); 50, 50, 100, 200, 100, 200 µm, from C to H, respectively.
Fig. 3 in Phylogenetic placement and microthrix pattern of Paranybelinia otobothrioides Dollfus, 1966 (Trypanorhyncha) from krill Nyctiphanes simplex Hansen, 1911
Fig. 3. Paranybelinia otobothrioides anatomy showing details of the bothria (Bo), tentacles (Te), appendix (Ap), bulbs (Bu), and velum (Ve). The arrows show the muscular rings surrounding the tentacle sheaths. Scale = 60 μm.
Fig. 1 in Phylogenetic placement and microthrix pattern of Paranybelinia otobothrioides Dollfus, 1966 (Trypanorhyncha) from krill Nyctiphanes simplex Hansen, 1911
Fig. 1. Paranybelinia otobothrioides parasitizing the subtropical krill Nyctiphanes simplex collected in the Gulf of California, Mexico. (A) Alive Pa. otobothrioides observed in the hemocoel of the host. (B) Histological section showing longitudinal view of Pa. otobothrioides inside the blastocyst. (C,D) Blastocyst containing the plerocercus of the same specimen, note the contraction (C) and expanding (D) movement of the blastocyst. (E) Pa. otobothrioides scolex dissected from the blastocyst. (F) Scanning electron microscope external view of the blastocyst, showing single distinct projectable centrally oriented porous-like terminal end (anterior), and 2 lateral and 1 central cone terminal projection (posterior end). (G,H) Detail of funnel openings at the anterior and posterior end. Scale bars: (A–F) 100 μm, (G) 5 μm, (H) 30 μm.
Fig. 4 in Phylogenetic placement and microthrix pattern of Paranybelinia otobothrioides Dollfus, 1966 (Trypanorhyncha) from krill Nyctiphanes simplex Hansen, 1911
Fig. 4. Surface ultrastructure of the scolex of Paranybelinia otobothrioides. (A) Anterolateral bothrial margins showing the distribution pattern of hamulate spinitriches with extended bases. (B,C) Hamulate spinitriches along the bothrial margins and on the distal bothrial surface. (D) Lineate spinitriches on the posterior margins of the bothria. (E) Tegumental groove at the posterior part of the bothria surrounded by lineate spinitriches and capilliform filitriches on the pars postbulbosa (also on pars vaginalis and bulbosa). (F) Tegumental groove at the posterior part of the bothria showing similar spinitriches (lineate or hamulate) to the surrounding bothrial surface. (G) Posterior end of appendix. (H) Appendix covered with papilliform filitriches. Scale bars: A, C, 100 μm; D-H, 50 μm.
FIGURE 3 in Phylogenetic placement of Mimosa pabstiana reinforces a biogeographic pattern of the Pleistocene Arc Theory in Mimosa (Leguminosae, Caesalpinoideae)
FIGURE 3. Distribution map of Mimosa pabstiana.
FIGURE 3 in A new species of Chusquea subg. Chusquea (Poaceae-Bambusoideae- Bambuseae) from Minas Gerais, Brazil: morphological evidence and phylogenetic placement within the Euchusquea clade
FIGURE 3. Geographic distributions of Chusquea gouveiensis and C. gracilis in Brazil.
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