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22,710 results for “Plant”
June - December 2009 RTK survey of salt marsh plant ground elevations to assess the accuracy of a LIDAR-derived digital elevation model.
Real time kinematic (RTK) GPS survey of ground elevations for six plant species (Spartina alterniflora, Juncus roemerianus, Batis maritima, Distichlis spicata, Salicornia virginica and Borrichia frutescens) and two non-vegetated cover classes (salt pan and intertidal mud) was carried out from June to December 2009 to assess the accuracy of a LIDAR-derived digital elevation model. In total, 1389 ground control points (GCP) were collected for the Duplin River (Sapelo Island) and Blackbeard Creek (Blackbeard Island) salt marshes.
February- March 2010 RTK survey of salt marsh plant ground elevations, plant characteristics and soil properties to support analysis of a LIDAR-derived DEM.
Real time kinematic (RTK) GPS survey of ground elevations for six plant species (Spartina alterniflora, Juncus roemerianus, Batis maritima, Distichlis spicata, Salicornia virginica and Borrichia frutescens) and two non-vegetated cover classes (salt pan and intertidal mud) was carried out from February to March 2010 to assess the accuracy of a LIDAR-derived digital elevation model. In total, 369 ground control points (GCP) were collected for the Duplin River (Sapelo Island) and Blackbeard Creek (Blackbeard Island) salt marshes with associated plant and soil charactistics (soil salinity and water content, soil organic matter, soil redox potential). Data were collected to examine the relationships between marsh soil elevation, plant habitat distribution and soil properties and to support the analysis of a a LIDAR-derived digital elevation model (DEM) and RTK data collect in 2009.
Plant allometry at GCE sampling sites 1-10 in October between 2002 and 2020.
The relationship between height and mass (allometry) was measured for plants collected from Georgia Coastal Ecosystems sampling sites 1-10 in October between 2002 and 2020. This dataset includes data from previous allometry measurements (PLT-GCEM-0211b and PLT-GCEM-0711) and data from 2 additional species measured at site 8 in 2020. Shoots or leaves (Juncus) were collected adjacent to permanent plots in each marsh zone by clipping at the soil surface. Dead leaves were removed from shoots. Height, flowering status (Spartina, Typha and Panicum species only), number of leaves (Spartina species and Zizaniopsis), and dry mass were measured for each plant. The allometric relationships determined in this study will allow annual GCE plant monitoring data to be converted from height to mass. This study may be repeated in the future to examine temporal trends in relation to environmental changes.
Fall 2001 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2001 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Large-scale woody plant removal outcomes in southern New Mexico, USA, 2007-2024
This data package contains datasets from a large-scale woody plant-specific herbicide experiment in southern New Mexico, USA. The study monitored vegetation cover in 43 pairs of plots representing treated and untreated conditions of the same plant community and environmental setting, including baseline and records at 5, 10, and in some cases 15 years post treatment. We also evaluated environmental factors that may control variation in treatment outcomes. This package supports the manuscript “Large-scale experimental evaluation of woody plant removal outcomes in desert grassland: restoration, novelty, or degradation?” by Bestelmeyer, Burkett, James, Gamon, and Schooley.
Plant cover on 2 x 2 meter rainfall runoff plots in grassland and creosotebush communities at the Jornada Basin LTER, 1989-1990
This data package contains plant cover measurements collected at natural rainfall-runoff plots installed on lands managed by the Chihuahuan Desert Rangeland Research Center (CDRRC) and the Jornada Experimental Range (JER) during the early years of Jornada Basin LTER (LTER-I and II). The purpose of this study was to quantify plant cover and phenology in grassland and creosote bush in runoff study plots, including those that included a termite removal treatment. Plant cover was measured on 20 2 x 2 meter hydrology runoff plots located in zones dominated by either creosotebush or grassland using sampling quadrats divided into 10 x 10 cm units. The number of 10x10cm squares occupied each by plant species was counted and scaled up to determine the total percent cover of each species per plot. Data recorded includes plant species codes, raw cover, percent cover, height of vegetation, and phenology. This study was completed in October 1990.
Plant cover under precipitation and nitrogen manipulation treatments at the Jornada Basin LTER site, 2006-2008
This data package contains plot cover data from a precipitation and nitrogen manipulation experiment conducted on the Jornada Experimental Range from 2006-2008. The objective of the study was to understand the interaction of precipitation and nitrogen fertilization on aboveground net primary productivity (ANPP) legacies. Rain-out shelters or supplemental irrigation were used to create 5 levels of precipitation: -80% and -50% reduced, ambient control, and +50% and +80% increased PPT. Half of the plots were randomly assigned to receive ammonium nitrate fertilizer. Plant cover was sampled with a line intercept method in fall 2006 before any treatments began, then again in fall 2007 and 2008 after treatments had been applied. Also available are soil moisture data from this study in data package knb-lter-jrn.210278001. For further information and results, see: Throop, H., L. G. Reichmann, O. Sala, and S. Archer. (2012), Response of dominant grass and shrub species to water manipulation: an ecophysical basis for shrub invasion in a Chihuahuan desert grassland. Oecologia 169: 373-383. https://doi.org/10.1007/s00442-011-2217-4 Reichmann, L. G., O. E. Sala, and D. P. C. Peters. (2013), Water controls on nitrogen transformations and stocks in an arid ecosystem. Ecosphere 4(1):11. <link xlink:href="https://doi.org/10.1890/ES12-00263.1">https://doi.org/10.1890/ES12-00263.1</link> Reichmann, L.G., Sala, O.E. and Peters, D.P.C. (2013), Precipitation legacies in desert grassland primary production occur through previous‐year tiller density. Ecology, 94: 435-443. https://doi.org/ <link xlink:href="https://doi.org/10.1890/12-1237.1">10.1890/12-1237.1</link>
Plant Cover at Permanent Quad Locations on the Jornada Experimental Range, 1915-ongoing
This ongoing data set contains basal cover of perennial grasses and canopy cover of shrubs in 122 1m x 1m quadrats on the Jornada Experimental Range in the northern extent of the Chihuahuan Desert of New Mexico, USA. These quadrats were established to investigate livestock grazing effects on plant community dynamics as well as responses to variable climatic conditions over time. Vegetation monitoring is carried out by charting the basal areas of perennial grasses and canopy areas of shrubs within each quadrat. Quadrats were established at different times, with start dates from 1915 to 1932. Specific quadrat locations were selected for a variety of reasons, but the overall intent was to represent varying plant community conditions across the Jornada Experimental Range. From 1915 to 1924 charting was done by dividing the quadrat frame into a decimeter grid using straps and reproducing locations of plants on grid paper. From 1925 to 2016 charting was done using a pantograph. With few exceptions, quadrats were charted until 1947, and a portion of the quadrats were charted intermittently between 1947 and 1979. Sampling resumed again in 1995 and continues every 5-6 years. Charts are digitally scanned, georeferenced, and chart features are digitally reproduced by hand. This data set is not yet complete; charts are actively being processed by Jornada Experimental Range staff and will be updated to this data package as they become available. A companion data package of counts of perennial forbs and subshrubs for each quadrat is also available for this project (data package knb-lter-jrn.210351002).
Plant Density at Permanent Quad Locations on the Jornada Experimental Range, 1915-ongoing
This ongoing data set contains counts of perennial forbs and subshrubs in 122 1m x 1m quadrats on the Jornada Experimental Range in the northern extent of the Chihuahuan Desert of New Mexico, USA. These quadrats were established to investigate livestock grazing effects on plant community dynamics as well as responses to variable climatic conditions over time. Vegetation monitoring is carried out by charting the locations of forbs and subshrubs within each quadrat. Quadrats were established at different times, with start dates from 1915 to 1935. Specific quadrat locations were selected for a variety of reasons, but the overall intent was to represent varying plant community conditions across the Jornada Experimental Range. From 1915 to 1924 charting was done by dividing the quadrat frame into a decimeter grid using straps and reproducing locations of plants on grid paper. From 1925 to 2016 charting was done using a pantograph. With few exceptions, quadrats were charted until 1947, and a portion of the quadrats were charted intermittently between 1947 and 1979. Sampling resumed again in 1995 and continues every 5-6 years. Charts are digitally scanned, georeferenced, and chart features are digitally reproduced by hand. This data set is not yet complete; charts are actively being processed by Jornada Experimental Range staff and will be updated to this data package as they become available. A companion data package of basal cover of perennial grasses and canopy cover of shrubs is also available for this project (data package knb-lter-jrn.210351001).
Drought and herbivory effects on woody plant seedling establishment and grass competition in the Jornada Basin, 2016-2018
This dataset contains observations of seedling establishment and grass competition under precipitation manipulations, and herbivory and granivory exclosure treatments, in the Chihuahuan desert of southern New Mexico, USA. The experiment took place at the Jornada Basin LTER site. We used a rainfall manipulation system and various herbivore exclosures in a factorial design, to test hypotheses about how precipitation (PPT), competition between grasses and shrub seedlings, and predation affect the germination and first-year survival of Mesquite (Prosopis glandulosa), a shrub that has encroached in Southern Great Plains and Chihuahuan Desert grasslands. Data collected in these files include seedling counts in each treatment over observation years 2016 to 2018. This data supports the related publication in Ecological Applications (Weber-Grullon et al. in press). The dataset is complete.
Archived plant, soil, water and microbial samples at the Kellogg Biological Station, Hickory Corners, MI (1988 to 2016)
Dataset AbstractPlants, soil, water and microbial samples are archived. Small quantities are available for research by contacting: Plant and Soil Samples — Stacey Vanderwulp Water Samples — Steve Hamilton Microbial Samples — Tom Schmidt original data source http://lter.kbs.msu.edu/datasets/55
PCN01 Plant and soil carbon and nitrogen pool data from the Belowground Plot Experiment at Konza Prairie
Data describe the carbon and nitrogen pools in combustible aboveground litter, and in shoots, roots, litter, and soil at the end of the growing season at the Belowground Plot Experiment in 2021.
PEW01 Plant species composition and edaphic properties in wallow and non-wallow plots at Konza Prairie
Bison wallows—bare depressions formed by repeated trampling and dust-bathing—introduce fine-scale heterogeneity to tallgrass prairie soils and plant communities. We compared plant communities and edaphic properties of wallows to adjacent non-wallow plots and cattle-grazed plots. Wallows had reduced organic matter and nitrogen but elevated clay and sodium. Non-fenced wallows had lower plant species richness than fenced wallows and all non-wallows. However, wallows supported distinct plant communities, including wetland species in temporary pools. While bison-grazed areas generally had higher plant diversity, wallows added localized variation not found in cattle or fenced plots. Our results suggest wallows function as small-scale ecosystem engineering features, shaping soil conditions and plant composition.
Krummholz island plant species density data for East of Tvan, 2000.
Species richness (density) on one meter sq. plots were measured on windward and leeward sides of krummholz trees previously studied by Seastedt and colleagues. Species richness of adjacent dry meadow tundra areas was also sampled. The results indicate that species richness is initially increased by the passage of tree islands. Richness was higher in leeward areas than on either windward or open tundra sites. The hypothesis that successional species must tolerate low nitrogen conditions found in the windward sites of tree islands was not supported by findings obtained here.
Warming and snow experiment plant reproductive and growth data for Saddle, 1993 - 1996.
The International Tundra Experiment (ITEX) is a consortium of research sites seeking to understand the response of tundra plant populations to changes in growing season temperatures through a simple temperature manipulation and transplant experiment. The research goal is to examine the phenologic and reproductive responses of a set of species to experimentally-induced warming at a network of sites. The ITEX design is hierarchical, with sites participating at whatever level they are able. At the minimum, participation in ITEX requires climate monitoring (using the LTER MSR standards), a temperature manipulation using one of three possible designs, and monitoring phenologic and reproductive variables for at least one designated ITEX species or two other species. The temperature manipulation is achieved through use of conical or hexagonal open-top chambers of solar fiberglass, which have been shown to increase the air temperature at the surface approximately 3 degrees C. ITEX studies at Niwot Ridge, a logical outgrowth of the long-term phenology studies there, uses a factorial design based around the long-term snowfence experiment. Twenty cones are placed behind the snowfence, distributed at 10, 25, 45, and 75 m from the fence; each cone is paired with an adjacent plot. Beginning with the 1995 season, 24 additional plots were implemented outside of the snowfence influence. Twelve cones are distributed beyond both the north and south edges of the snowfence area, at 10, 25, 45, and 75 m behind the line of the snowfence; each cone is paired with an adjacent plot. This results in the following treatments: increased winter snow, increased summer temperature, increased snow and increased temperature, and control. Key phenologic, growth, and reproductive traits are being followed on marked individuals of Acomastylis (Geum) rossii and Bistorta (Polygonum) bistortoides, and complete species composition is being monitored.
N fertilization experiment plant species composition data for north of the saddle from 2011 to ongoing, yearly
In August 2010, N fertilization plots were established over a gradient of Geum rossii (Aco) and Deschampsia caespitosa (Des) cover in an area of moist-wet meadow alpine tundra north of the Saddle on Niwot Ridge. A total of 20 plots were set up, with 1X-10X being control plots where no nitrogen (N) was added, and 1N-10N being fertilization plots where N was added. Control and fertilized plots were paired so that pairs had the same percent cover of Aco and Des. Initially in 2010, N addition plots were fertilized at a rate of 28.8 g N x m^2 x yr^-1 (72 g of slow-release Osmocote (40-0-0)). In 2011 fertilization rate was reduced to N x m^2 x yr^-1 (25 g Osmocote (2011-2013), Duration Urea 120, 40-0-0, SGN 150 (2014-on).
Alpine plant seed microbiomes, germination, and plant-soil feedbacks, Niwot Ridge and Green Lakes Valley, 2018.
Seed and soil microbiomes strongly affect plant performance, and these effects can scale-up to influence plant community structure. However, seed and soil microbial community composition are variable across landscapes, and different microbial communities can differentially influence multiple plant metrics (biomass, germination rate), and community stabilizing mechanisms. We measured how microbiomes inside seeds and in soils varied among alpine plant species and communities that differed in plant species richness and density. Across 10 common alpine plant species, we found a total of 318 bacterial and 128 fungal operational taxonomic units (OTUs) associated with seeds, with fungal richness affected by plant species identity more than sampling location. However, seed microbes had only marginally significant effects on plant germination success and timing. In contrast, soil microbes associated with two different plant species had significant effects on plant biomass, and their effect depended both on the plant species and the location the soils were sampled from.
Plant functional traits in the black sand extended growing season experiment, 2023.
Climate change is predicted to affect the alpine at a more rapid rate than other ecosystems. One predicted consequence is earlier snowmelt, which the Niwot Ridge LTER site Black Sand experiment aimed to replicate. Black sand was hand-spread across the early snowmelt treatment to cause a more rapid snowmelt than in the control plots. Sand was still spread across the control plots after snowmelt to control for the effects of the sand on vegetation. Each treatment also contained ITEX chambers which raised the temperature of individual plots. Within this larger experiment, we measured plant functional traits to see if they varied across the four treatments: control, control + ITEX, early snowmelt, and early snowmelt + ITEX.
Individual plant phenology data for Saddle nodal plots, 1984 - 1992.
Phenological data were collected weekly for permanently tagged plants located in 14 permanent plots (refered to as the nodal plots) in the Niwot Ridge Saddle area. 12 of the plots represent the 6 plant communities or noda (two from each nodum) identified in the Saddle (May 1973). The two remaing plots were located adjacent to two temporary snowfences erected near Saddle grid stake 49. The plots were 1x10 m, and were further divided into 10, 1x1 m quadrats. Plant species studied include Acomastylis (Geum) rossii, Bistorta (Polygonum) bistortoides and Bistorta (Polygonum) vivipara. Ten individuals of each species present in a plot were randomly selected. Plants were tagged approximately two inches behind each plant with an aluminum tag labelled with the species abbreviation and plant number. Tagged plant locations were determined using a Cartesian coordinate system with the outside corner of quadrat 1 serving as the origin. These locations are on permanent file at INSTAAR. Data collection began on 1 June, or as plots became snow free, and continued until senescence. Missing tags were replaced during the first week of data collection. Missing plants were replaced by a new plant in immediate area and the new coordinates were recorded.
Elevation gradient plant species composition data for A1, B1, C1, D1, 1953 - 1996.
Plant species presence and abundance (Kooiman and Korb data) were recorded at four stands along an elevational gradient in the Front Range of Colorado. Each stand location was determined by Dr. John Marr. The Marr species data were recorded from at least 12 3ft x 3ft plots located in the corners of his 66ft x 66ft tree quadrats. Only species presence was recorded, not abundance. The Kooiman and Lindhart as well as the Korb data were collected from 50 85cm x 100cm plots which were systematically located within a sampling strip measuring 2m x 100m. Plots were located every two meters alternating left and right of the sampling strip. Species present in the strip but not in the plots were recorded by Kooiman as well as Korb. Species names in this data set are from Weber and Wittman 1996; the Marr and Kooiman datasets were updated using Weber and Wittman's list.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.