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3,576 results for “strain”
FIGURE. Phylogenetic analysis of Chrysosporium spp. based on ITS sequences. Statistical support values (≥50 %) are shown at nodes, and presented as ML bootstrap support/Bayesian posterior probabilities. Names in black bold are the strains isolated in this study, the coloured names are the new species. in Morphological and phylogenetic characterisations reveal nine new species of Chrysosporium (Onygenaceae, Onygenales) in China
FIGURE. Phylogenetic analysis of Chrysosporium spp. based on ITS sequences. Statistical support values (≥50 %) are shown at nodes, and presented as ML bootstrap support/Bayesian posterior probabilities. Names in black bold are the strains isolated in this study, the coloured names are the new species.
Draft genome assembly of Macrophomina pseudophaseolina strain WAC 2767, and ex-epitype strain of M. phaseolina.
<p>This genome assembly is published in "Draft genome assemblies of <em>Fusarium marasasianum</em>, <em>Huntiella abstrusa</em>, two <em>Immersiporthe knoxdaviesiana</em> isolates, <em>Macrophomina pseudophaseolina</em>, <em>Macrophomina phaseolina</em>, <em>Naganishia randhawae</em>, and <em>Pseudocercospora cruenta</em>, Wingfield, B.D., De Vos, L., Wilson, A.M. <em>et al.</em> IMA Genome - F16. <em>IMA Fungus</em> <strong>13, </strong>3 (2022)". 10.1186/s43008-022-00089-z</p> <p> </p> <p> </p>
Draft Genome Sequence of Pseudomonas sp. Strain MWU13-2922, Isolated from a Wild Cranberry Bog in Truro, Massachusetts
<p>Annotated genome of Pseudomonas sp. MWU13-2922</p>
Draft Genome Sequences of Aquitalea sp strain MWU-14.2238
<p>Annotated genome of Aquitalea sp MWU-14.2238. </p>
Draft Genome Sequences of Pseudomonas sp. Strain MWU12-2233, Isolated from a Wild Cranberry Bog in Provincetown, Massachusetts
<p>Annotated genome of Pseudomonas sp. MWU12-2233.</p>
Draft Genome Sequences of Pseudomonas sp strain MWU-15.20650
<p>Annotated genome of Pseudomonas sp. MWU 15-20650.</p>
Draft Genome Sequences of Aquitalea sp strain MWU-14.2238
<p>Annotated genome of Aquitalea sp MWU-14.2238. </p>
Draft Genome Sequence of Pseudomonas sp. strain MWU13.2105, isolated from Wild Cranberry Bog in Truro, Massachusetts
<p>Annotated genome of Pseudomonas sp. strain MWU13.2105.</p>
Draft Genome Sequence of Pseudomonas sp. strain MWU13.2100, isolated from Wild Cranberry Bog in Truro, Massachusetts
<p>Annotated genome of Pseudomonas sp. strain MWU13.2100.</p>
Draft Genome Manuscript for Pseudomonas sp. Strain MWU13.3659 Isolated from Berries Surfaced in Commercial Cranberry Bogs in Massachusetts, USA
<p>Annotated genome of Pseudomonas sp. MWU13.3659</p>
Core SNP multiple alignments composed by L. garvieae, L. lactis, Streptococcus and Enterococcus strains.
<p>Core SNP multiple alignments composed by L. garvieae, L. lactis, Streptococcus and Enterococcus strains.</p>
Dataset of "Strain-correlated mechanochromism in different polyurethanes featuring a supramolecular mechanophore"
<p>Primary data of the study reported in this publication</p>
Resistance of Dickeya solani strain IPO 2222 to lytic bacteriophage ΦD5 results in fitness tradeoffs for the bacterium during infection – protein mass fingerprints dataset
<p>Protein mass fingerprints (D. solani Tn5 mutants) dataset supporting the manuscript entitled: <strong>Resistance of </strong><em><strong>Dickeya solani</strong></em><strong> strain IPO 2222 to lytic bacteriophage </strong><strong>Φ</strong><strong>D5 results in fitness tradeoffs for the bacterium during infection.</strong></p>
Data set "Narrow, fast, and "cool" mantle plumes caused by strain-weakening rheology in Earth's lower mantle" (G-cubed)
<p>This archive contains data related to the manuscript “Narrow, fast, and “cool” mantle plumes caused by strain-weakening rheology in Earth’s lower mantle” by Gülcher et al., (G-cubed). It contains output quantities and selected fields for the numerical models shown and discussed in the paper (M###). Moreover, it contains the input parametric files implemented in StagYY. Please read the README.dat file for more information. </p>
Source data - Differences in the range of thermoneutral zone between mouse strains - potential effects on translational research
<p>1. Data of Resting Metabolic Rate (RMR) of random bred (RB) mice and mice divergently selected toward high (H-BMR), and low (L-BMR) Basal Metabolic Rate<br> RMR of each individual from H-BMR and L-BMR line types was recorded at the following Ta: 34, 32, 26, 23, 18 °C (starting with the warmest to avoid acclimation to cold before the next measurement). RMR of RB mice was sequentially measured at Ta of 34, 32, 28, and 23°C.<br> 2. The thermal conductance (C) of mouse body covers (skin and fur) measured using heated artificial models<br> The heating wire was connected to a regulated DC power supplier and the model was heated gently to a temperature of 38°C and power was adjusted to maintain 38°C. When supplied power and the model temperature were stable (± 0.1°C) for at least 10 minutes, the voltage (U) and current (I) were recorded and the DC electric power (P) calculated, where P = U x I. </p>
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
Competition dynamics in long-term propagations of Schizosaccharomyces pombe strain communities
<p>Experimental evolution studies with microorganisms such as bacteria and yeast have been an increasingly important and powerful tool to draw long-term inferences of how microbes interact. However, while several strains of the same species often exist in natural environments, many ecology and evolution studies in microbes are typically performed with isogenic populations of bacteria or yeast. In the present study, we firstly perform a genotypic and phenotypic characterization of two lab and eight natural strains of the yeast <i>Schizosaccharomyces pombe</i>. We then propagated, in a rich resource environment, yeast communities of 2-, 3-, 4- and 5-strains for hundreds of generations and asked which fitness related phenotypes – maximum growth rate or relative competitive fitness – would better predict the outcome of a focal strain during the propagations. While the strain's growth rates would wrongly predict long-term co-existence, pairwise competitive fitness with a focal strain qualitatively predicted the success or extinction of the focal strain by a simple multi-genotype population genetics model, given the initial community composition. Interestingly, we have also measured the competitive fitness of the ancestral and evolved communities by the end of the experiment (≈370 generations) and observed frequent maladaptation to the abiotic environment in communities with more than three members. Overall, our results aid establishing pairwise competitive fitness as good qualitative measurement of long-term community composition but also reveal a complex adaptive scenario when trying to predict the evolutionary outcome of those communities.</p>
Correlation analysis of epicardial adipose tissue and ventricular myocardial strain in Chinese amateur marathoners using cardiac magnetic resonance
<p><span>The volume of epicardial adipose tissue (EAT) is associated with an increased incidence of cardiovascular disease (CVD); however, only a few studies have examined its effect on the myocardial function of endurance in athletes. The association between the EAT and the variation of myocardial function is still unclear in amateur marathoners. Consequently, by using some sedentary individuals as the control, this study aims to evaluate the correlation between the EAT volume and the myocardial strain in the left and right ventricles of Chinese amateur marathoners by cardiac magnetic resonance (CMR).</span>The volume of epicardial adipose tissue (EAT) is associated with an increased incidence of cardiovascular disease (CVD); however, only a few studies have examined its effect on the myocardial function of endurance in athletes. The association between the EAT and the variation of myocardial function is still unclear in amateur marathoners. Consequently, by using some sedentary individuals as the control, this study aims to evaluate the correlation between the EAT volume and the myocardial strain in the left and right ventricles of Chinese amateur marathoners by cardiac magnetic resonance (CMR).</p>
Characterization of virulence factors and antibiotic resistance pattern of uropathogenic Escherichia coli strains in a tertiary care center
<p><strong>Background</strong>: Urinary tract infections (UTIs) are the most prevalent bacterial infection in humans. The uropathogenic E. <em>coli </em>(UPEC) express a wide range of virulence factors that contribute to their pathogenicity<span>.</span><span> The emergence of Multidrug resistance(MDR)-associated UTI is increasing off late</span>. Hence this study was undertaken to monitor the distribution of virulence factors among UPEC strains and to note the antibiogram, outcome and type of associated UTI.</p> <p><strong>Methods</strong>: A prospective cross-sectional time-bound study of 6 months was done on clinically significant <span>urinary </span>isolates of <em>Escherichia</em> <em>coli</em>. <span>Detection of haemolysin production and serum resistance</span><span> was done by </span><span>phenotypic methods. Genotypic characterization of the virulence genes (papC, iutA, hlyA, cnf1) was done by multiplex PCR. </span>Demographic data, clinical history, antibiogram and type of UTI were collected from clinical case records.</p> <p><strong>Results</strong>: 75 <em>E</em>. <em>coli</em> isolates from patients with suspected urinary tract infections were included. <span>Females had a higher preponderance of UTI (66.7%).93% of the patients were adults and the remaining 7% were from the paediatric population. 24 (32%) isolates showed haemolysis by plate haemolysis method, and all 75 (100%) isolates were serum resistant. </span>Out of 75 isolates, 65 were positive for at least one of the four targeted genes, while the remaining 10 isolates were negative for all 4 genes. <span>Multidrug resistance was found in 40 (53.3%) isolates. 97.4% of the UTI cases had a favourable clinical outcome at discharge. Mortality due to urosepsis was 2.6%.</span></p> <p><strong>Conclusion</strong>:<span> The association of hemolysin production with resistance to imipenem and norfloxacin in UPEC strains was significant. T</span><span>he presence of the hlyA gene is positively associated with ceftazidime resistance. </span><span>Nitrofurantoin, piperacillin tazobactam and cefaperazone sulbactam maybe suitable candidates for empirical therapy of UTIs. Drugs like aminoglycosides, carbapenems and fosfomycin may be used as reserve drugs in the treatment of MDR-UTI</span><span>. However, inappropriate usage can gradually increase antibiotic resistance. Hence, proper selection of antibiotics in hospitals taking into account the local antibiogram is needed to reduce the emergence of antibiotic resistance.</span></p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.