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Dataset results
1,007 results for “Smoothing”
Effect of mechanically responsive miRNAs on biomechanical properties of airway smooth muscle cells and their related drug development studies [miRNA-Seq]
GEO Series GSE206433. Homo sapiens. 9 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Heterogeneous Cardiac- and Neural Crest-Derived Aortic Smooth Muscle Cells have Similar Transcriptional Changes after TGFβ Signaling Disruption [scRNA-seq-of-human-aortic-media-vascular-cells]
GEO Series GSE253934. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
total RNA-seq from bronchial smooth muscle cell (ENCSR000AAE)
GEO Series GSE78532. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Data from Dowiasch et al. (2020) Nonretinocentric Localization of Successively Presented Flashes During Smooth Pursuit Eye Movements
<p>Dataset associated with the following publication:</p> <p>Dowiasch S, Meyer-Stender S, Klingenhoefer S, Bremmer F. Nonretinocentric localization of successively presented flashes during smooth pursuit eye movements. <em>J Vis</em>. 2020;20(4):8. doi:10.1167/jov.20.4.8</p>
Data from: Insect adhesion on rough surfaces: analysis of adhesive contact of smooth and hairy pads on transparent micro-structured substrates
Insect climbing footpads are able to adhere to rough surfaces, but the details of this capability are still unclear. To overcome experimental limitations of randomly rough, opaque surfaces, we fabricated transparent test substrates containing square arrays of 1.4 µm diameter pillars, with variable height (0.5 and 1.4 µm) and spacing (from 3 to 22 µm). Smooth pads of cockroaches (Nauphoeta cinerea) made partial contact (limited to the tops of the structures) for the two densest arrays of tall pillars, but full contact (touching the substrate in between pillars) for larger spacings. The transition from partial to full contact was accompanied by a sharp increase in shear forces. Tests on hairy pads of dock beetles (Gastrophysa viridula) showed that setae adhered between pillars for larger spacings, but pads were equally unable to make full contact on the densest arrays. The beetles' shear forces similarly decreased for denser arrays, but also for short pillars and with a more gradual transition. These observations can be explained by simple contact models derived for soft uniform materials (smooth pads) or thin flat plates (hairy-pad spatulae). Our results show that microstructured substrates are powerful tools to reveal adaptations of natural adhesives for rough surfaces.
Data file for turbulence driving pattern in the Phantom smoothed particle hydrodynamics and magnetohydrodynamics code
<p>** this file is automatically downloaded by phantom on running the code **</p> <p>This is the default driving pattern file used in the "turbdrive" setup of the Phantom smoothed particle hydrodynamics and magnetohydrodynamics code, which was originally written for the set of simulations shown in <a href="http://adsabs.harvard.edu/abs/2010MNRAS.406.1659P">Price & Federrath (2010)</a>. The driving pattern file was originally created by Christoph Federrath.</p> <p>For details and references on the Ornstein-Uhlenbeck stochastic turbulent driving algorithm itself, see section 2.5 of the Phantom code paper (<a href="http://adsabs.harvard.edu/abs/2018PASA...35...31P">Price et al. 2018</a>).</p> <p>The same pattern file has been used in several subsequent studies, including <a href="http://adsabs.harvard.edu/abs/2016MNRAS.461.1260T">Tricco, Price & Federrath (2016)</a> and <a href="http://adsabs.harvard.edu/abs/2017MNRAS.471L..52T">Tricco, Price & Laibe (2017)</a>.</p> <p>For details on how to read this file see the Phantom source code (<a href="https://github.com/danieljprice/phantom/blob/master/src/main/forcing.F90">src/main/forcing.f90</a>)</p>
Data for "Impact of HI cooling and study of accretion disks in AGB wind-companion smoothed particle hydrodynamic simulations"
<p>Additional material to Malfait et al. 2024(a) "Impact of HI cooling and study of accretion disks in AGB wind-companion smoothed particle hydrodynamic simulations"</p> <p>This contains input files and final output dumps of the Phantom simulations of this paper, and some movies to illustrate the complex flows within the binary systems.</p> <p>The code used to perform the simulations is available at: <a href="https://github.com/danieljprice/phantom">https://github.com/danieljprice/phantom.</a></p> <p>Splash (<a href="https://github.com/danieljprice/splash">https://github.com/danieljprice/splash</a> ) and Plons (<a href="https://github.com/Ensor-code/plons">https://github.com/Ensor-code/plons</a> ) were used to create figures and plots from this data.</p> <p> </p>
Code and data for reproducing results in P.Vacek, H. Anzt, E. Carson, N. Kohl, U. Rüde and Y.-H. Tsai: Mixed precision multigrid with smoothing based on incomplete Cholesky factorization (2024).
<p>Code and data for reproducing results in P.Vacek, H. Anzt, E. Carson, N. Kohl, U. Rüde and Y.-H. Tsai: Mixed precision multigrid with smoothing based on incomplete Cholesky factorization (2024). </p> <p>The repository contains MATLAB codes as well as a snapshot of a [Ginkgo Library repository](https://github.com/ginkgo-project/ginkgo), used for generating the results presented in the paper.</p>
Data from: Evolution of smooth tubercle bacilli PE and PE_PGRS genes: evidence for a prominent role of recombination and imprint of positive selection
Background: PE and PE_PGRS are two mycobateria-restricted multigene families encoding membrane associated and secreted proteins that have expanded mainly in the pathogenic species, notably the Mycobacterium tuberculosis complex (MTBC). Several lines of evidence attribute to PE and PE_PGRS genes critical roles in mycobacterial pathogenicity. To get more insight into the nature of these genes, we sought to address their evolutionary trajectories in the group of smooth tubercle bacilli (STB), the putative ancestor of the clonal MTBC. Methodology/Principal Findings: By focussing on six polymorphic STB PE/PE_PGRS genes, we demonstrate significant incongruence among single gene genealogies and detect strong signals of recombination using various approaches. Coalescent-based estimation of population recombination and mutation rates (ρ and θ, respectively) indicates that the two mechanisms are of roughly equal importance in generating diversity (ρ/θ = 1.457), a finding in a marked contrast to house keeping genes (HKG) whose evolution is chiefly brought about by mutation (ρ/θ = 0.012). In comparison to HKG, we found 15 times higher mean rate of nonsynonymous substitutions, with strong evidence of positive selection acting on PE_PGRS62 (dN/dS = 1.42), a gene that has previously been shown to be essential for mycobacterial survival in macrophages and granulomas. Imprint of positive selection operating on specific amino acid residues or along branches of PE_PGRS62 phylogenetic tree was further demonstrated using maximum likelihood- and covarion-based approaches, respectively. Strikingly, PE_PGR62 proved highly conserved in present-day MTBC strains. Conclusions/Significance: Overall the data indicate that, in STB, PE/PE_PGRS genes have undergone a strong diversification process that is speeded up by recombination, with evidence of positive selection. The finding that positive selection involved an essential PE_PGRS gene whose sequence appears to be driven to fixation in present-day MTBC strains lends further support to the critical role of PE/PE_PGRS genes in the evolution of mycobacterial pathogenicity.
The Role of the Space Environment on Vascular Endothelial and Smooth Muscle Cell Processes
ClinicalTrials.gov study NCT03156257. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Smooth Extubation With Ketofol for Induction of General Anesthesia in Laparoscopic Drilling of Polycystic Ovary
ClinicalTrials.gov study NCT04365686. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Efficacy of Different Agents in Treatment of Initial Caries on Smooth Surfaces in Permanent Teeth in Children
ClinicalTrials.gov study NCT05206539. IPD Sharing: NO. Countries: 1. Publications: 0.
Assessing the Reliability of Smooth Pursuit Across Various Neck Postures Using a Custom Ocular Motor Detection System
ClinicalTrials.gov study NCT06634576. IPD Sharing: YES. Countries: 1. Publications: 0.
SMOOTH - Blood Pressure Control in Diabetic/Obese Patients
ClinicalTrials.gov study NCT00239538. IPD Sharing: Not stated. Countries: 8. Publications: 0.
The Effect of Lidocaine on Smooth Emergence With Double Lumen Tube
ClinicalTrials.gov study NCT04455711. IPD Sharing: NO. Countries: 1. Publications: 0.
OCT-guided DSAEK Graft Shaping and Smoothing
ClinicalTrials.gov study NCT01586234. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Dosing Study of Remifentanil for Smooth Removal of the Laryngeal Mask Airway (LMA)
ClinicalTrials.gov study NCT01931683. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effect-site Concentration of Remifentanil for Smooth Removal of the Double-lumen Endotracheal Tube
ClinicalTrials.gov study NCT02528825. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Blinded Comparison Trial of Two Topical Creams to Reduce Thigh Girth and to Smooth Thigh Skin in Women
ClinicalTrials.gov study NCT01920841. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Fatty Acids in Airway Smooth Muscle of Asthmatics
ClinicalTrials.gov study NCT02809235. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.