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Fig. 10. Pseudanthessius excertus n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 10. Pseudanthessius excertus n. sp., female. A. maxilla. B. maxilliped. C. leg 1. D. leg 3. E. leg 4. F. right side of first two urosomal somites, dorsal. Scale bas: 0.02 mm for all.
Fig. 9. Pseudanthessius excertus n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 9. Pseudanthessius excertus n. sp., female. A. habitus, dorsal. B. urosome, dorsal. C. right caudal ramus, dorsal. D. rostrum. E. antennule. F. antenna. G. labrum. H. mandible. I. maxillule. Scale bars: A. 0.1 mm. B. 0.05 mm. C-I. 0.02 mm.
Fig. 7. Maxilliclausia propria n. gen. n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 7. Maxilliclausia propria n. gen. n. sp., female. A. habitus, dorsal. B. urosome, dorsal. C. right caudal ramus, dorsal. D. egg sac. E. antennule. F. antenna. G. mouthparts. H. maxillule. Scale bars: A, D. 0.5 mm. B. 0.1 mm. C, E-G. 0.05 mm. H. 0.02 mm.
Fig. 3. Indoclausia bipartita n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 3. Indoclausia bipartita n. sp. Female: A. leg 5. Male: B. habitus, dorsal. C. maxilliped. D. left genital operculum, ventral. Scale bars: A. 0.1 mm. B. 0.2 mm. C, D. 0.05 mm.
Fig. 1. Indoclausia bipartita n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 1. Indoclausia bipartita n. sp., female. A. habitus, dorsal. B. urosome, dorsal. C. antennule. D. antenna. E. distal part of antenna. F. mandible. Scale bars: A. 0.5 mm. B. 0.2 mm. C, D. 0.05 mm. E, F. 0.02 mm.
Fig. 2. Indoclausia bipartita n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 2. Indoclausia bipartita n. sp., female. A. cephalic area, ventral. B. maxillule. C. maxilla. D. maxilliped. E. leg 1. F. leg 2. G. leg 3. H. leg 4. Scale bars: A. 0.1 mm. B. 0.02 mm. C-H. 0.05 mm.
Fig. 15. Sewelloya plana n. gen. n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 15. Sewelloya plana n. gen. n. sp., female. A. cephalic region, ventral. B. labrum. C. mandible. D. maxillule. E. maxilla. F. maxilliped. G. leg 1. Scale bars: A. 0.05 mm. B-G. 0.02 mm.
Fig. 12. Polyankylis ovilaxa n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 12. Polyankylis ovilaxa n. sp., female. A. antenna. B. labrum. C. mandible. D. maxillule. E. maxilla. F. maxilliped. G. leg 1. Scale bars: A. 0.05 mm. B-G. 0.02 mm.
Fig. 6. Clausia parva n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 6. Clausia parva n. sp., male. A. habitus, dorsal. B. urosome, ventral. C. maxilliped. D. leg 1. E. leg 2. Scale bars: A, B. 0.1 mm. C-E. 0.02 mm.
Fig. 11. Polyankylis ovilaxa n in Six new species of Copepoda (Clausiidae, Pseudanthessiidae, Polyankyliidae) associated with polychaetes from Korea
Fig. 11. Polyankylis ovilaxa n. sp., female. A. habitus, dorsal. B. urosome, dorsal. C. first two urosomal somites, ventral. D. rostral area, ventral. E. antennule. Scale bars: A. 0.1 mm. B, D, E. 0.05 mm. C. 0.02 mm.
Supplementary Tables - Re-analysis of hepatitis B virus integration sites reveals potential new loci associated with oncogenesis in hepatocellular carcinoma
<p>------------------------------------------------------------</p> <p><strong>Supplementary Tables</strong></p> <p>supplementary_table.xlsx</p> <ul> <li>T2T-CHM13_human</li> <li>T2T-CHM13_hbv</li> <li>GRCh38_human</li> <li>GRCh38_hbv</li> <li>GRCh_human_annotation</li> <li>meta</li> </ul> <p>------------------------------------------------------------</p> <p><strong>Re-analysis of hepatitis B virus integration sites reveals potential new loci associated with oncogenesis in hepatocellular carcinoma</strong><br> <a href="https://doi.org/10.5501/wjv.v12.i3.209">https://doi.org/10.5501/wjv.v12.i3.209</a></p><br> <p><strong>BACKGROUND</strong></p> <p>Hepatitis B virus (HBV) is a major cause of hepatocellular carcinoma (HCC). HBV DNA can get integrated into the hepatocyte genome to promote carcinogenesis. However, the precise mechanism by which the integrated HBV genome promotes HCC has not been elucidated.</p> <p><strong>AIM</strong></p> <p>To analyze the features of HBV integration in HCC using a new reference database and integration detection method.</p> <p><strong>METHODS</strong></p> <p>Published data, consisting of 426 Liver tumor samples and 426 paired adjacent non-tumor samples, were re-analyzed to identify the integration sites. Genome Reference Consortium Human Build 38 (GRCh38) and Telomere-to-Telomere Consortium CHM13 (T2T-CHM13 (v2.0)) were used as the human reference genomes. In contrast, human genome 19 (hg19) was used in the original study. In addition, GRIDSS VIRUSBreakend was used to detect HBV integration sites, whereas high-throughput viral integration detection (HIVID) was applied in the original study (HIVID-hg19).</p> <p><strong>RESULTS</strong></p> <p>A total of 5361 integration sites were detected using T2T-CHM13. In the tumor samples, integration hotspots in the cancer driver genes, such as TERT and KMT2B, were consistent with those in the original study. GRIDSS VIRUSBreakend detected integrations in more samples than by HIVID-hg19. Enrichment of integration was observed at chromosome 11q13.3, including the CCND1 pro-moter, in tumor samples. Recurrent integration sites were observed in mitochondrial genes.</p> <p><strong>CONCLUSION</strong></p> <p>GRIDSS VIRUSBreakend using T2T-CHM13 is accurate and sensitive in detecting HBV integration. Re-analysis provides new insights into the regions of HBV integration and their potential roles in HCC development.</p>
Jumping to new hosts: the diversification of flea beetles (Coleoptera: Chrysomelidae: Alticini) in the context of their host plant associations
<p><span>Flea beetles (Alticini) represent one of the most diverse groups within the family Chrysomelidae and are associated with more than 100 different plant families. Conspicuously, only 10 genera account for about a quarter of flea beetle diversity, whereas about 380 genera each comprise less than ten species, indicating different rates of diversification within the Alticini. Here, we reconstructed the phylogenetic relationships of 608 species in 101 Alticini genera using mitogenomes and cytochrome oxidase I, and applied several frameworks of clade-specific diversification rate analyses. Increased diversification rates were consistently detected in the cosmopolitan genera <em>Altica</em> and <em>Longitarsus</em>, the Palearctic genus <em>Phyllotreta</em>, and in neotropical taxa of the subtribe Oedionychina. In addition, we tested whether the evolution of specialized interactions with plants of the order Brassicales influenced the diversification of <em>Phyllotreta</em> and <em>Psylliodes</em> flea beetles. Specialization on Brassicales was only associated with increased diversification rates in <em>Phyllotreta</em> but not in <em>Psylliodes</em>. Our results indicate that host associations per se do not explain different diversification rates and lay the groundwork for investigating the evolutionary drivers of rapid radiations in Alticini.</span></p>
Figs 14–17 in Uroobovella phoenicicola sp. n., a new Uropodina mite (Acari: Mesostigmata) associated with the African palm weevil (Rhynchophorus phoenicis Fabricius, 1801) from Cameroon
Figs 14–17. Uroobovella phoenicicola sp. n. male and deutonymph, paratypes (Cameroon): (14) intercoxal area of male; (15) ventral view of gnathosoma in male; (16) dorsal idisoma of deutonymph; (17) ventral idiosoma of deutonymph.
Figs 4–9 in Uroobovella phoenicicola sp. n., a new Uropodina mite (Acari: Mesostigmata) associated with the African palm weevil (Rhynchophorus phoenicis Fabricius, 1801) from Cameroon
Figs 4–9. Uroobovella phoenicicola sp. n. female, holotype (Cameroon): (4) intercoxal area; (5) peritreme; (6) tritosternum and coxae I; (7) ventral view of gnathosoma and palps; (8) epistome; (9) chelicera.
Figs 1–3 in Uroobovella phoenicicola sp. n., a new Uropodina mite (Acari: Mesostigmata) associated with the African palm weevil (Rhynchophorus phoenicis Fabricius, 1801) from Cameroon
Figs 1–3. Uroobovella phoenicicola sp. n. female, holotype (Cameroon): (1) body, dorsal view; (2) ventral view; (3) lateral view.
Figs 10–13 in Uroobovella phoenicicola sp. n., a new Uropodina mite (Acari: Mesostigmata) associated with the African palm weevil (Rhynchophorus phoenicis Fabricius, 1801) from Cameroon
Figs 10–13. Uroobovella phoenicicola sp. n. female, holotype (Cameroon): (10) leg I; (11) leg II; (12) leg III; (13) leg IV (all legs in natural position).
Data for: Faster evolution of a premating reproductive barrier is not associated with faster speciation rates in New World passerine birds
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Jumping to new hosts: the diversification of flea beetles (Coleoptera: Chrysomelidae: Alticini) in the context of their host plant associations
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Pathogenic Leptospira isolated from rodents in New Orleans, Louisiana USA, and associated site information
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Data and R code for “Tree growth response to shifting soil nutrient economy depends on mycorrhizal associations”, New Phytologist, 2019.
The mycorrhizal-associated nutrient economy hypothesis proposes a strong connection between plant and fungal traits and the dominant form of soil nutrients. If true, then shifting from an organic to an inorganic nutrient economy should benefit arbuscular mycorrhizal (AM) trees because they are more suited to acquiring inorganic forms of nutrients and have limited decomposing capabilities when compared to ectomycorrhizal (ECM) trees. An inorganic nutrient economy was experimentally promoted by applying inorganic phosphorus (P) fertilizer and/or elevating soil pH with lime in three Allegheny Plateau mixed mesophytic forests. Trees were measured over seven growing seasons to determine how growth responded to the treatments based on mycorrhizal association. AM-associated trees showed increased growth in response to increased inorganic nutrients, but ECM tree growth was suppressed when compared to the control. We also observed that understory and mid-story trees responded to the treatments, but large overstory trees showed no significant growth response. Results support the hypothesis that AM trees respond positively to an inorganic nutrient economy. While raising pH in acidic soils can be detrimental to ECM tree growth, the exact mechanism for this response is unclear
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.