Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
592
datasets available to search
ShareScore release 0.7.1
Dataset results
592 results for “songbirds”
Cellular repertoires of the song motor pathway of songbirds
GEO Series GSE150486. Lonchura striata. 2 samples. Type: Expression profiling by high throughput sequencing.
Seasonal gene expression in a migratory songbird
GEO Series GSE87549. Catharus ustulatus. 19 samples. Type: Expression profiling by high throughput sequencing.
Data from: The allometry of sound frequency bandwidth in songbirds
<p>Theory predicts that allometric constraints on sound production should be stronger for the lower frequencies of vocalizations than for their higher frequencies, which could originate an allometry for sound frequency bandwidth, but this was never tested. Using song recordings of ca. 1000 passerine species (from >75% passerine genera), we show a significantly steeper allometry for the lower than the higher song frequencies, resulting in a positive allometry of frequency bandwidth: larger species can use wider bandwidths than smaller species. The bandwidth allometry exists in songbirds (oscines), but not non-oscine passerines, indicating that it emerges from a combination of physical constraint and the evolved behavior of oscines: unlike the narrow bandwidths of most non-oscine songs, the learned songs of oscines often use wide bandwidths that can be limited by both the lower and upper limits of sound frequency production. This bandwidth allometry has implications for several research topics in acoustic communication.</p>
Data from: No effect of blood sampling or phytohaemagglutinin injection on post-fledging survival in a wild songbird
The injection of phytohaemagglutinin (PHA) and sampling of blood are widely used in studies of wild vertebrates to assess components of immune and endocrine function and health state and to obtain genetic material. Despite the pervasive use of these techniques in the life sciences, their potential effects on survival are rarely considered. For example, whether injection of the immunogen PHA into body parts critical for locomotion (e.g., the prepatagium, or wing web, in birds) affects survival has not been tested. Here, we test whether injection of PHA into the wing web and blood sampling from nestling house wrens affects their subsequent recruitment and survival as breeding adults. Capture-mark-recapture analysis on a large sample of young (N = 20,152 fledglings from 3959 broods) treated over 10 years revealed that neither PHA injection nor blood sampling affected individual survival and detection probability. Recruitment as a breeder varied among years, but this variation was not attributable to sampling effort, or the percent of all adults identified at the nest during a given year. Variation in the percent of adults identified was primarily attributable to the effect of nest depredation on our ability to capture nesting pairs. Our results indicating lack of an effect of blood sampling and immune stimulation on survival are encouraging, but we recommend further work to assess the potential negative effects of all commonly used techniques on the survival of study subjects in the wild, including the potential costs associated with mounting various immunological responses.
R unmarked dataframe: Fine-scale forest structure, not management regime, drives occupancy of a declining songbird, the Olive-sided Flycatcher, in the core of its range
<p>Encounter history, site covariates, and observation covariates formatted as an unmarkedFrameOccu object for use in program R with the package unmarked to replicate the analyses conducted by Hack et al. in 'Fine-scale forest structure, not management regime, drives occupancy of a declining songbird, the Olive-sided Flycatcher, in the core of its range.'</p>
Database for the manuscript "Songbirds adjust oxygen carrying capacity through modulation of the number rather than the size of erythrocytes"
<p>This database is used for the manuscript "Songbirds adjust oxygen carrying capacity through modulation of the number rather than the size of erythrocytes". The database includes hematological parameters of 697 individuals from three species. One sheet describes all the columns in the database. For more information on the methodology, please see the Main Text or the Supplementary Materials.</p> <p>The database has restricted access (upon request) for the entire duration of the revision process. If a paper is accepted, the database will become public.</p>
Nest predation decreases with increasing nest height in forest songbirds: a comparative study
<p>Original data from: "Nest predation decreases with increasing nest height in forest songbirds: a comparative study"</p>
Data from: The allometry of sound frequency bandwidth in songbirds
Open the record for dataset details and reuse information.
Data from: No effect of blood sampling or phytohaemagglutinin injection on post-fledging survival in a wild songbird
Open the record for dataset details and reuse information.
Seasonal divergence in reproductive timing on the verge of spring: comparing hypothalamic transcriptome of two seasonally sympatric North American songbird populations.
GEO Series GSE305857. Junco hyemalis. 13 samples. Type: Expression profiling by high throughput sequencing.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e05]
GEO Series GSE36709. Taeniopygia guttata. 24 samples. Type: Expression profiling by array.
Singing female songbirds: Female-specific gene networks in the song area HVC
GEO Series GSE83674. Serinus canaria; Uraeginthus cyanocephalus; Ploceus bicolor; Taeniopygia guttata. 155 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e07]
GEO Series GSE36712. Taeniopygia guttata. 24 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain
GEO Series GSE36748. Melospiza melodia; Zonotrichia leucophrys gambelii; Sturnus vulgaris; Haemorhous mexicanus; Taeniopygia guttata; Loxia curvirostra. 488 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e06]
GEO Series GSE36711. Taeniopygia guttata; Haemorhous mexicanus. 24 samples. Type: Expression profiling by array.
Sex differences on the effect of Testosterone in songbirds
GEO Series GSE59310. Serinus canaria; Taeniopygia guttata. 12 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e08]
GEO Series GSE36734. Sturnus vulgaris; Taeniopygia guttata. 120 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e09]
GEO Series GSE36738. Taeniopygia guttata. 12 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e04]
GEO Series GSE36708. Taeniopygia guttata. 48 samples. Type: Expression profiling by array.
The impact of experience-dependent and independent factors on gene expression in songbird brain [e02]
GEO Series GSE36706. Taeniopygia guttata. 16 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.