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FIGURE 2 in Annotated checklist of the vascular plants of Mount Kenya, East Africa
FIGURE 2. Vegetation zones of Mount Kenya. A. Remote view of Mount Kenya. B. Lower montane wet forest. C. Lower montane dry forest. D. Bamboo zone. E. Upper montane forest. F. Heath zone. G. Afro-alpine zone. H. Nival zone. Photographs: G.W. Hu.
FIGURE 1 in Annotated checklist of the vascular plants of Mount Kenya, East Africa
FIGURE 1. Remote sensing image of Mount Kenya (Provided by X.H. Wei from Institute of Remote Sensing and Digital Earth, Chinese Academy of Sciences).
Vascular epiphyte global distributions
<div> <p><b>Aim:</b> Vascular epiphytes are ubiquitous components of wet tropical forests where they contribute substantially to local and regional plant diversity. While some basic epiphyte distribution patterns are relatively well studied, little effort has been made to understand the drivers responsible for constraining their global distribution. This study quantifies the substantial contribution of epiphytes to global gradients and centres of vascular plant diversity and explores whether epiphytes vary from terrestrial plants in relation to contemporary and historical environmental variables.</p> <p><b>Location:</b> Global.</p> <p><b>Time period:</b> Present.</p> <p><b>Major taxa studied:</b> Tracheophyta.</p> <p><b>Methods:</b> Using a comprehensive epiphyte species list (EpiList 1.0), and distribution information for 27,850 epiphyte species derived from numerous literature sources, we describe the global biogeography of epiphytes. We used generalized linear mixed effects models to assess the relationship between epiphytic and terrestrial plant diversity, and contemporary and historical environmental predictors. </p> <p><b>Results:</b> We find that epiphytes substantially contribute to global centres of vascular plant diversity, accounting for up to 39% of the vascular flora in Neotropical regions. Epiphytes decrease in species numbers with increasing latitude at a rate three times faster than terrestrial plants, a trend that is driven mainly by the distribution of tropical forests and precipitation. Further, large regional differences emerge that are explained by several large endemic angiosperm families (e.g., Neotropical Bromeliaceae) that are absent in other tropical regions.</p> <p><b>Main conclusions:</b> Our results show that epiphytes are disproportionately diverse in most global centres of plant diversity and play an important role in driving the global latitudinal diversity gradient for plants. The distribution of precipitation and tropical forests emerge as major drivers of the latitudinal diversity gradient in epiphyte species richness. Finally, our findings demonstrate how epiphyte floras in different biogeographical realms are composed of different families and higher taxa revealing an important signature of historical biogeography.</p> </div>
Data from: The patterns of vascular plant discoveries in China
<p>Aim</p> <p>1. To understand geographic patterns of species discovery by examining the effect of growth form, range size, and geographic distribution on discovery probability of vascular plant species in China.</p> <p>2. To find out which taxa harbor the largest number of undiscovered species and where those species locate.</p> <p>3. To find out the determinants of province-level mean discovery time and inventory completeness.</p> <p>Location: China</p> <p>Methods</p> <p>We compiled the discovery time and province-level geographic distributions of ~31000 vascular plant species described between 1753 and 2013 from Flora of China. We used a Cox proportional hazard model to determine the biological and geographic correlates of discovery probability. Accumulation curves of species discoveries were fitted by a logistic discovery model to estimate inventory completeness of different growth forms and of different provinces. We then used linear regression to identify the determinants of mean discovery time, and beta regression to identify the determinants of inventory completeness.</p> <p>Results</p> <p>We found that species with larger range size and distributed in northeastern part of China have a higher discovery probability. Coastal species were discovered earlier than inland species. Trees and shrubs of seed plants have the highest discovery probability while ferns have the lowest discovery probability. Herbs have the largest number of undiscovered species in China. Most undiscovered species will be found in southwest China, where three global biodiversity hotspots locate. Spatial patterns of mean discovery time and inventory completeness are mainly driven by the total number of species, human population density in an area, latitude and longitude of a province.</p> <p>Main conclusions</p> <p>Socio-economic factors primarily determine the discovery patterns of vascular plants in China. Undiscovered species are most likely to be narrow-ranged, inconspicuous endemic species such as herbs and ferns, which are prone to extinctions and locate in biodiversity hotspots in southwestern China.</p>
FIGURE. Landscapes and vegetation types at Quiçama National Park. A. Wooded savannah with Adansonia digitata. B. Mosaic of wooded savannah and thicket. C. Grassy savannah. D. Slope with thicket. E. Grassy savanna with Setaria welwitschi. F. Wooded savannah. G. Cuanza River shores with herbaceous vegetation. H. Herbaceous vegetation on the banks of the Cuanza River and slope with open forest. I. Coastal sands. J. Mangrove at the Cuanza River estuary, with Rhizophora racemosa. (Photographs by the authors). in An annotated checklist of the vascular flora of Quiçama National Park, Angola
FIGURE. Landscapes and vegetation types at Quiçama National Park. A. Wooded savannah with Adansonia digitata. B. Mosaic of wooded savannah and thicket. C. Grassy savannah. D. Slope with thicket. E. Grassy savanna with Setaria welwitschi. F. Wooded savannah. G. Cuanza River shores with herbaceous vegetation. H. Herbaceous vegetation on the banks of the Cuanza River and slope with open forest. I. Coastal sands. J. Mangrove at the Cuanza River estuary, with Rhizophora racemosa. (Photographs by the authors).
FIGURE. Selected species from the flora of Quiçama National Park. A. Adansonia digitata. B. Euphorbia candelabrum. C. Acacia welwitschii. D. Hyphaene guineensis. E. Rhizophora racemosa. F. Guibourtia carrissoana var. gossweileri. G. Tessmannia camoneana. H. Sterculia setigera. I. Carissa spinarum. J. Boscia urens. K. Maerua angolensis. L. Grewia villosa. M. Sesuvium crithmoides. N. Aloe zebrina. O. Barleria elegans. P. Setaria welwitschii. (Photographs by the authors). in An annotated checklist of the vascular flora of Quiçama National Park, Angola
FIGURE. Selected species from the flora of Quiçama National Park. A. Adansonia digitata. B. Euphorbia candelabrum. C. Acacia welwitschii. D. Hyphaene guineensis. E. Rhizophora racemosa. F. Guibourtia carrissoana var. gossweileri. G. Tessmannia camoneana. H. Sterculia setigera. I. Carissa spinarum. J. Boscia urens. K. Maerua angolensis. L. Grewia villosa. M. Sesuvium crithmoides. N. Aloe zebrina. O. Barleria elegans. P. Setaria welwitschii. (Photographs by the authors).
Supplementary material 1 from: Just A, Gourvil J, Millet J, Boullet V, Milon T, Mandon I, Dutrève B (2015) SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories. PhytoKeys 56: 47-60. https://doi.org/10.3897/phytokeys.56.5723
Numerical appendix: Explanation note: A shapefile representing the dataset completeness (based on the Jackknife 1, a non-parametric estimator) on a grid of 10 km by 10 km cells. The number of records in each cell was used as an estimator of the sampling effort. The ratio between the observed and estimated richness of species measures the completeness of the inventory in each surveyed cell (Vallet et al. 2012).
Supplementary material 1 from: Zhou Y, Liu B, Mbuni Y, Yan X, Mwachala G, Hu G, Wang Q (2017) Vascular flora of Kenya, based on the Flora of Tropical East Africa. PhytoKeys 90: 113-126. https://doi.org/10.3897/phytokeys.90.20531
The Synoptic List of Families and Genera of Kenyan Vascular Plants (SLFGKVP) : Explanation note: There are 6293 indigenous and 588 exotic vascular plants of Kenya in total, which belong to 1752 genera and 223 families. Families of Lycophytes and monilophytes are arranged by PPG I system (PPG I 2016), families of gymnosperms are arranged by Christenhusz gymnosperms system (Christenhusz et al. 2011a), and families of angiosperms are arranged by APG IV system (APG IV 2016).
3D vascular organization
<p>3D representation of the four plexuses including subdermal, suprafascial, intrafascial et subfascial plexuses with an emphasis on segmented intrinsic vascularization within the fascia lata (white vessels).</p>
Threats of land use to the global diversity of vascular plants
<p>Inputs, outputs, and scripts used in the model that supports the findings of the article "Threats of Land Use to the Global Diversity of Vascular Plants". We first calculated the extinction threat at ecoregion level using the countryside species-area model. Next, we allocated the regional extinction threats to land use. Finally, we calculated the global extinction threat per ecoregion and land use.</p> <p>In this repository, you will find the inputs necessary to run the model, the R scripts to run the model, and the outputs of the model.</p>
FIGURE 2 in A first checklist to the vascular plants of La Amistad International Park (PILA), Costa Rica-Panama
FIGURE 2. Map of biodiversity zones and collection localities within PILA. Collection localities are represented by black or blue dots. Triangles represent peaks and green dots represent villages. Black lines delimit river basins. The coloured areas represent the biodiversity zones as identified in Monro et al. (2009): dark green = Low elevation mixed forest, dull yellow-green = Mixed forest in transition to low elevation forest, pink = Mixed forest in transition to cloud forest, bright green = sloud forest, tan = low elevation oak forest, dull grey-green = high elevation oak forest, bright yellow = páramo, pale blue = sabana natural grassland, lilac = pasture, orange-brown = dense thicket, red = secondary forest.
Vascular Epiphytes of the South America Dry Diagonal (SADD)
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Supplementary material 1 from: Galasso G, Domina G, Adorni M, Ardenghi NMG, Bonari G, Buono S, Cancellieri L, Chianese G, Ferretti G, Fiaschi T, Forte L, Guarino R, Labadessa R, Lastrucci L, Lazzaro L, Magrini S, Minuto L, Mossini S, Olivieri N, Scoppola A, Stinca A, Turcato C, Nepi C (2018) Notulae to the Italian alien vascular flora: 5. Italian Botanist 5: 45-56. https://doi.org/10.3897/italianbotanist.5.25910
Supplementary data : Explanation note: 1. Nomenclature updates; 2. Status/Note updates; 3 Distribution updates; 4. Synonyms, misapplied or included names.
Supplementary material 1 from: Bartolucci F, Domina G, Ardenghi NMG, Banfi E, Bernardo L, Bonari G, Buccomino G, Calvia G, Carruggio F, Cavallaro V, Chianese G, Conti F, Facioni L, Del Vico E, Di Gristina E, Falcinelli F, Forte L, Gargano D, Mantino F, Martino M, Mei G, Mereu G, Olivieri N, Passalacqua NG, Pazienza G, Peruzzi L, Roma-Marzio F, Scafidi F, Scoppola A, Stinca A, Nepi C (2018) Notulae to the Italian native vascular flora: 5. Italian Botanist 5: 71-81. https://doi.org/10.3897/italianbotanist.5.25892
Supplementary material : Explanation note: 1. Nomenclature updates; 2. Distribution updates; 3. Synonyms, misapplied or included names.
Supplementary material 1 from: Bartolucci F, Domina G, Ardenghi NMG, Bacchetta G, Bernardo L, Buccomino G, Buono S, Caldararo F, Calvia G, Carruggio F, Cavagna A, D'Amico FS, Di Carlo F, Festi F, Forte L, Galasso G, Gargano D, Gottschlich G, Lazzaro L, Magrini S, Maiorca G, Medagli P, Mei G, Mennini F, Mereu G, Miserocchi D, Olivieri N, Passalacqua NG, Pazienza G, Peruzzi L, Prosser F, Rempicci M, Roma-Marzio F, Ruggero A, Sani A, Saulle D, Steffanini C, Stinca A, Terzi M, Tondi G, Trenchi M, Viciani D, Wagensommer RP, Nepi C (2018) Notulae to the Italian native vascular flora: 6. Italian Botanist 6: 45-64. https://doi.org/10.3897/italianbotanist.6.30575
Supplementary data : Explanation note: 1. Nomenclature updates; 2. Distribution updates; 3. Synonyms, misapplied or included names.
Supplementary material 1 from: Galasso G, Domina G, Alessandrini A, Ardenghi NMG, Bacchetta G, Ballelli S, Bartolucci F, Brundu G, Buono S, Busnardo G, Calvia G, Capece P, D'Antraccoli M, Di Nuzzo L, Fanfarillo E, Ferretti G, Guarino R, Iamonico D, Iberite M, Latini M, Lazzaro L, Lonati M, Lozano V, Magrini S, Mei G, Mereu G, Moro A, Mugnai M, Nicolella G, Nimis PL, Olivieri Н, Pennesi R, Peruzzi L, Podda L, Probo M, Prosser F, Ravetto Enri S, Roma-Marzio F, Ruggero A, Scafidi F, Stinca A, Nepi C (2018) Notulae to the Italian alien vascular flora: 6. Italian Botanist 6: 65-90. https://doi.org/10.3897/italianbotanist.6.30560
Supplementary data : Explanation note: 1. Nomenclature updates; 2. Note updates; 3. Distribution updates; 4. Synonyms, misapplied or included names.
Vascularized tumor spheroid simulation with seed next to arterial bifurcation
<p>We conducted a lattice free cell based simulation of tumor spheroids within an artificial vasculature as<br> documented in the related publication. This dataset contains time snapshots of the simulation where the initial<br> tumour seed was placed next to an arterial bifurcation. The data is stored as uncompressed hdf5 file.</p>
Vascularized tumor spheroid simulation with seed at center
<p>We conducted a lattice free cell based simulation of tumor spheroids within an artificial vasculature as<br> documented in the related publication. This dataset contains time snapshots of the simulation where the initial<br> tumour seed was place in the center of the simulation domain. The data is stored as uncompressed hdf5 file.</p>
Vascularized tumor spheroid simulation with seed at center including alpha shape information
<p>We conducted a lattice free cell based simulation of tumor spheroids within an artificial vasculature as<br> documented in the related publication. This dataset contains time snapshots of the simulation where the initial<br> tumour seed was place in the center of the simulation domain. The data is stored as uncompressed hdf5 file.</p>
Vascularized tumor spheroid simulation with seed next to venous bifurcation
<p>We conducted a lattice free cell based simulation of tumor spheroids within an artificial vasculature as<br> documented in the related publication. This dataset contains time snapshots of the simulation where the initial<br> tumour seed was place next to a venous bifurcation. The data is stored as uncompressed hdf5 file.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.