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opennotspecifiedDec 2020View details →

Fig. 1 in Streptomyces gossypiisoli sp. nov., isolated from cotton soil in Xinjiang, PR China

Fig. 1. Scanning electron microscopy image of strain TRM 44567T grown on Gause's agar at 37 °C for 7 days. Bars, 5 µm (left) and 20 µm (right).

Fig. 1 in Nocardioides vastitatis sp. nov., isolated from Taklamakan desert soil

Fig. 1. Neighbour-joining phylogenic tree on the basis of 16S rRNA gene sequences showing the phylogenic position of strain 21Sc5- 5T and related species. Luedemannella helvata 3-9(24)T was used as an outgroup. Numbers at nodes refer to bootstrap values (based on 1000 replicates; only values>50 % are shown). Bar, 1 nt substitution per 1000 nt.

Fig. 1 in Blautia argi sp. nov., a new anaerobic bacterium isolated from dog faeces

Fig. 1. Phylogenetic consensus tree based on 16S rRNA gene sequences, reconstructed with the neighbour-joining (NJ), maximumparsimony (MP) and maximum-likelihood (ML) algorithms, indicating the taxonomic positions of isolates and close relatives. Bootstrap values (>70 %, NJ/MP/ML) calculated for 1000 subsets are shown at branch nodes. Atopobium minutum served as an outgroup. Bar, 0.02 subsitutions per nucleotide position.

Fig. 1 in Nocardioides sambongensis sp. nov., isolated from Dokdo Islands soil

Fig. 1. Neighbour-joining phylogenetic tree reconstructed based on a comparative analysis of 16S rRNA gene sequences showing the relationships between strain KUDC5002T and related species. Numbers at the nodes indicate the levels of bootstrap support (%) based on 1000 resampled datasets. The 16S rRNA gene sequence of Kribbella flavida DSM 17836T was used as an outgroup. Solid circles indicate that the corresponding nodes were also obtained in both the maximum-likelihood and maximum-parsimony trees. Open circles indicate that the corresponding nodes were also obtained from the maximum-likelihood tree. Bar, 0.01 nucleotide substitutions per position.

Fig. 1 in Arenibacillus arenosus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from sea sand

Fig. 1. Maximum-likelihood phylogenetic tree based on nearly complete 16S rRNA gene sequences showing the relationships of strain CAU 1304T to members of related genera of the family Rhodobacteraceae. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the neighbour-joining and maximum-parsimony algorithms. The numbers at nodes indicate levels of bootstrap support based on a maximum-likelihood analysis of 1000 resampled datasets; only values>70 % are given. Bar, 0.01 substitutions per nucleotide position. Pelagicola litoralis CL-ES2T (EF192392) was used as an outgroup organism.

Fig. 3 in Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges

Fig. 3. Neighbour-joining tree based on five-gene concatenated sequences (atpD, gyrB, recA, rpoB and trpB, 2454 nt) showing the relationships between strains LHW50302T, LHW51701T and related members of the genus Streptomyces. Kitasatospora aburaviensis NRRL B-2218T was used as an outgroup. Numbers at nodes indicate levels of bootstrap support (%) based on neighbour-joining analysis of 1000 resampled datasets; only values above 50 % are shown. Asterisks (*) and crosses (‡) indicate branches that were also found using the maximum-likelihood method and the maximum-parsimony method, respectively. Bar, 0.02 substitutions per site.

Fig. 2 in Actinomyces qiguomingii sp. nov., isolated from the Pantholops hodgsonii

Fig. 2. Neighbour-joining phylogenomic tree of Actinomyces qiguomingii sp. nov. and other available strains of the most closely related species based on 178 core genes from genome sequences. Numbers on the tree indicate each split in the tree with support values from the Shimodaira–Hasegawa test [34] calculated for 1000 resamples. Bifidobacterium bifidum ATCC 29521T was used as the outgroup.

Fig. 1 in Flavobacterium niveum sp. nov., isolated from a freshwater creek

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing the position of Flavobacterium niveum TAPW14T and other Flavobacterium species. Numbers at nodes are bootstrap percentages (>70 %) based on the neighbour-joining (above nodes) and maximum-parsimony (below nodes) tree-making algorithms. Filled circles indicate branches of the tree that were also recovered using the maximum-likelihood and maximum-parsimony tree-making algorithms. Open circles indicate that the corresponding nodes were also recovered in the tree generated with the maximum-parsimony algorithm. Myroides odoratus ATCC 4651T was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Flavobacterium tibetense sp. nov., isolated from a wetland

Fig. 1. Phylogenetic tree of strain YH5T and related type strains within the genus Flavobacterium based on almost-complete 16S rRNA gene sequences. The tree was calculated using the neighbour-joining algorithm in MEGA 5 software. Numbers at nodes indicate the percentages of bootstrap support based on 1000 resampled datasets; only values>50 % are shown. Zobellia galactanivorans DsijT (FP476056) was used as outgroup. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Actinomyces qiguomingii sp. nov., isolated from the Pantholops hodgsonii

Fig. 1. Neighbour-joining phylogenetic tree based on nearly complete 16S rRNA gene sequences showing the relationships between Actinomyces qiguomingii sp. nov. and the type strains of the genus Actinomyces. Solid circles indicate the nodes supported by both maximum-likelihood and maximum-parsimony analyses. Bootstrap values (70%) based on 1000 replicates are shown at branch nodes. Bar, 0.020 changes per nucleotide position.

Fig. 2 in Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges

Fig. 2. Neighbour-joining phylogenetic tree, based on almost-complete 16S rRNA gene sequences, showing the phylogenetic relationships of strains LHW63021T, LHW51701T and related members of the genus Streptomyces. Kitasatospora aburaviensis NRRL B-2218T was used as an outgroup. Numbers at nodes indicate levels of bootstrap support (%) based on neighbour-joining analysis of 1000 resampled datasets; only values above 50 % are shown. Asterisks (*) and crosses (‡) indicate branches that were also found using maximum-likelihood method and the maximum-parsimony method, respectively. Bar, 0.005 substitutions per nucleotide position.

Fig. 1 in Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges

Fig. 1. Scanning electron micrograph of strain LHW50302T (a) and strain LHW51701T (b) showing a hooked and looped spore arrangement and smooth spore ornamentation following growth on ISP 2 at 28 ǪC for 7 days. Bar, 1 µm.

Fig. 1 in Nocardioides silvaticus sp. nov., isolated from forest soil

Fig. 1. An NJ tree based on 16S rRNA gene sequences showing the phylogenetic relationships of strain S-34T and other related strains. Terrabacter tumescens DSM 20308T was used as an outgroup member. Filled circles indicate that the corresponding nodes were also recovered in trees reconstructed with the MP tree and ML tree. Numbers at nodes indicate levels of bootstrap support based on 1000 resampled datasets. Values below 50 % are not shown. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Melaminivora jejuensis sp. nov., isolated from Swinery waste

Fig. 1. Neighbour-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the position of strain KBB12T within the family Comamonadaceae. Bootstrap values (>70 %) based on 1000 replications are shown at the nodes. Burkholderia cepacia ATCC 25416T was used as an out-group. Black circles indicate that the corresponding branches were also recovered in trees obtained by the maximum parsimony and the maximum likelihood methods. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences of strain XAAS-2T and close relatives. Bootstrap values (1000 replications) above 50 % are showed at nodes. Asterisks indicate that the corresponding nodes were also recovered in the maximum-likelihood and maximum-evolution trees. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Deinococcus hibisci sp. nov., isolated from rhizosphere of Hibiscus syriacus L. (mugunghwa flower)

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships of the stain Deinococcus hibisci THG-AG1.5T with the related species. Filled circles at nodes indicate branches that were also recovered by using the maximumparsimony algorithm. Bootstrap values (expressed as percentage of 1000 replications) over 70 % are shown at the branching points. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Paenibacillus shunpengii sp. nov., isolated from farmland soil

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing relationships between strain YYJ7-1T and closely related species. The tree was rooted using the sequence of Cohnella xylanilytica MX15-2T as the outgroup. Numbers at nodes represent bootstrap values (based on 1000 replicates). Filled circles indicate that the corresponding branches were also recovered using the maximum-likelihood and minimum-evolution algorithms. Bar, 0.01 substitutions per nucleotide position. GenBank accession numbers are shown in parentheses.

opennotspecifiedDec 2016View details →

Fig. 1 in Flavobacterium eburneum sp. nov., isolated from reclaimed saline land soil

Fig. 1. Phylogenetic tree reconstructed using the neighbour-joining method based on 16S rRNA gene sequences, and showings the position of strain SA31T and its closely related species. Escherichia coli ATCC 11775T (GenBank accession no. JMST01000030) was used as an outgroup. Evolutionary distances were computed using Kimura's 2-parameter method [21] and are given in units of number of base substitutions per site. Bootstrap values (expressed as percentages of 1000 iterations)>50 % are shown at branch points. Filled circles indicate branches found in phylogenetic consensus trees generated with the maximum-likelihood method. Bar, 0.02 nucleotide substitutions per nucleotide position.

opennotspecifiedFeb 2022View details →

FIGURE 2. Ophioglossum isanense S. Petchsri, Li in Ophioglossum isanense sp. nov. (Ophioglossaceae, Pteridophyta) from Thailand

FIGURE 2. Ophioglossum isanense S. Petchsri, Li-Bing Zhang & T. Jaruwattanaphan, sp. nov.—A. Plants in habitat from Phu Phan National Park, Sakon Nakhon.—B. Plants in habitat from Phu Pha Lek National Park, Sakon Nakhon.—C. Habit.—D. Persistent leaf sheath at bases of common stalk (arrow head).—E. Adaxial side of trophophyll.—F. Fertile stalk.—G, H. SEM photomicrographs of spores.—G. Distal view.—H. Proximal view (All photos by P. Limpanasittichai & S. Chokrassameehirun). Scale bars: A–C: 1 cm, D–F: 5 mm.