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64 results for “Assembly Modeling”
Relevant loci from genomic assembly, gene model, and interproscan annotation, for PKZILLA-B1 from B-type P. parvum strain RCC3426
<h2><strong>Version 1.0 of the <em>Prymnesium parvum</em> RCC3426 PKZILLA-B1 gene annotation (PKZILLA-B1.gff)</strong></h2> <p>Version 1.0 of the <em>P. parvum</em> RCC3426 gene annotation (PKZILLA-B1.gff), consisting of expert guided <em>ab initio</em> gene prediction of just the PKZILLA-B1 gene model on its selected loci from the draft RCC3426 genome assembly. Interproscan annotations of PKS domains are also included (see <code>interproscan-parallel.zip</code>)</p> <p>See the manuscript "Materials and Methods" section for full details.</p> <p><strong>seqkit stat statistics:</strong></p> <p>file format type num_seqs sum_len min_len avg_len max_len<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gz FASTA DNA 1 <strong>118,049 </strong> 118,049 118,049 118,049<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gz FASTA DNA 1 <strong>116,940</strong> 116,940 116,940 116,940<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz FASTA Protein 1 <strong>38,980</strong> 38,980 38,980 38,980<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gz FASTA DNA 1 116,940 116,940 116,940 116,940<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gz FASTA DNA 16 116,940 1,140 7,308.8 14,895<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gz FASTA Protein 16 38,980 380 2,436.3 4,965<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gz FASTA DNA 16 116,940 1,140 7,308.8 14,895<br>./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gz FASTA DNA 30 2,218 63 73.9 101</p> <p><strong>seqkit sum checksums:</strong></p> <p>seqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gz<br>seqkit.v0.1_DLS_k0_1366665c674b96f4e302f8afab53fa4e ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gz<br>seqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gz<br>seqkit.v0.1_PLS_k0_404d6657b58d22da550585c3bfa06f8d ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gz<br>seqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gz<br>seqkit.v0.1_DLS_k0_af7f0b217bd14bf6dff5dbca157c5cbb ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gz<br>seqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gz<br>seqkit.v0.1_PLS_k0_9f280bb95c4ee9afe7a1f28975de338d ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz</p> <p><strong>seqkit sum -g checksums:</strong></p> <p>seqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gz<br>seqkit.v0.1_DLS_k0_1366665c674b96f4e302f8afab53fa4e ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gz<br>seqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gz<br>seqkit.v0.1_PLS_k0_fced14c2e2e98c5464f20ac91aab1bde ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gz<br>seqkit.v0.1_DLS_k0_101122a59afec1b41ca7f9d1a4186b52 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gz<br>seqkit.v0.1_DLS_k0_af7f0b217bd14bf6dff5dbca157c5cbb ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gz<br>seqkit.v0.1_DLS_k0_48447ccbb39a48a389fc726e3647a9a4 ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gz<br>seqkit.v0.1_PLS_k0_8eb393988e68fdfa1fe5a435eefe353b ./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz</p> <p><strong>openssl md5 checksums:</strong></p> <p>MD5(./PKZILLA-B1.gff)= b7389f45965e2b078597ceeaa2ad4d67<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.CDS.fa.gz)= 7f576dbd61bd60ba1955ce46b5077e85<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.gene.fa.gz)= 7dcae701dea30fbfa4508c0f01438168<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSnt.fa.gz)= 0fae261356f4a20629d20fccaad00d1c<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indCDSpep.fa.gz)= d0081800e314b9f99c0fa759d4e80187<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indExon.fa.gz)= 79b6b942b61fcab1f14682f38e80cf41<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.indIntron.fa.gz)= c2055a64ebcf332c7c6bb28c57762c94<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.mRNA.fa.gz)= 7f576dbd61bd60ba1955ce46b5077e85<br>MD5(./PKZILLA-B1.gff__PKZILLA-1-on-B.loci.nt.rename.consensus.fa.pep.fa.gz)= 2f01d8cf130b343076e1d9197e6041ab</p> <p>MD5(./interproscan-parallel.zip)= 595ec69a0d77e8c96c7aa29ea913532b</p>
Video - Assembly Task Modelling Strategy for Automatic Robot Program Generation
<p>Video - Assembly Task Modelling Strategy for Automatic Robot Program Generation</p>
Deepurify: a multi-modal deep language model to remove contamination from metagenome-assembled genomes
<p>The SIM1 testing set.</p>
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Data from: Evolutionary history inferred from the de novo assembly of a non-model organism, the blue-eyed black lemur
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Data from: State-space reduction and equivalence class sampling for a molecular self-assembly model
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Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling
GEO Series GSE272707. Homo sapiens. 4 samples. Type: Other.
Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling
GEO Series GSE262382. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling [hKPA_invivo_data]
GEO Series GSE297772. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling [hKPA_TT_data]
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Modeling cancer-associated mutations reveals an integrated role for the Pol epsilon catalytic core in replisome assembly and DNA synthesis
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Data supporting: A Paradigm Shift to Assembly-like Finite Element Model Updating
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Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling
GEO Series GSE264516. Mus musculus. 34 samples. Type: Expression profiling by high throughput sequencing.
Atomic Layer Deposition of HfS2 on Functionalized Self-Assembled Monolayers on Ordered Oxide Surfaces: A Model Study under UHV Conditions
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Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions
GEO Series GSE51838. Enchytraeus crypticus. 8 samples. Type: Expression profiling by array.
De novo assembly of macaque gene models
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NASA 3D Models: Vehicle Assembly Building (VAB)
The Vehicle Assembly Building (VAB) is one of the largest buildings in the world. It was originally built for assembly of Apollo/Saturn vehicles and was later modified to support Space Shuttle operations. Polygons: 3528 Vertices: 3388
NASA 3D Models: Vehicle Assembly Building (VAB)
The Vehicle Assembly Building (VAB) is one of the largest buildings in the world. It was originally built for assembly of Apollo/Saturn vehicles and was later modified to support Space Shuttle operations. Polygons: 3528 Vertices: 3388
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