Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
56
datasets available to search
ShareScore release 0.9.0
Dataset results
56 results for “Benchmark study”
Figure 4 from: Albratty M, Thangavel N, Chandrasekaran B, Meraya AM, Alhazmi HA, Muthumanickam S, Boomi P, Bhagavan NB, Saleh SF (2024) Benchmarking docking, density functional theory and molecular dynamics studies to assess the aldose reductase inhibitory potential of Trigonella foenum-graecum compounds for managing diabetes-associated complications. Pharmacia 71: 1-10. https://doi.org/10.3897/pharmacia.71.e118949
Figure 4 Intermolecular interactions of (a) Tigogenin, (b) Gitogenin, (c) Epalrestat with active-site amino acids of the enzyme aldose reductase. All the ligands are shown in all atoms' green-coloured ball and stick-type representations. The names of amino acids with ID numbers are mentioned under each circle around each ligand. On the 2D figures analysis, green-coloured dotted lines indicate hydrogen bonding interactions involving electronegative elements like nitrogen and oxygen atoms; light purple-coloured dotted lines indicate π-alkyl interactions; violet-coloured dotted lines indicate π-sigma interactions. Light green colour amino acids without bonding represent van der Waals interactions, whereas, orange-red colour amino acids indicate unfavourable interactions. The light-blue halo surrounding the interacting residues represents the solvent-accessible surface that is proportional to its diameter.
Figure 1 from: Albratty M, Thangavel N, Chandrasekaran B, Meraya AM, Alhazmi HA, Muthumanickam S, Boomi P, Bhagavan NB, Saleh SF (2024) Benchmarking docking, density functional theory and molecular dynamics studies to assess the aldose reductase inhibitory potential of Trigonella foenum-graecum compounds for managing diabetes-associated complications. Pharmacia 71: 1-10. https://doi.org/10.3897/pharmacia.71.e118949
Figure 1 The binding site of aldose reductase was predicted using CASTp. The residues highlighted in blue boxes constitute the binding site.
Figure 3 from: Albratty M, Thangavel N, Chandrasekaran B, Meraya AM, Alhazmi HA, Muthumanickam S, Boomi P, Bhagavan NB, Saleh SF (2024) Benchmarking docking, density functional theory and molecular dynamics studies to assess the aldose reductase inhibitory potential of Trigonella foenum-graecum compounds for managing diabetes-associated complications. Pharmacia 71: 1-10. https://doi.org/10.3897/pharmacia.71.e118949
Figure 3 Analysis and comparison of the predictive power of AutoDock and AutoDock Vina: (a) Receiver operating characteristic curves, (b) Predictiveness curves, (c) Enrichment curves, red is ADock and green is Avina.
Unraveling the impact of nuclear quantum effects on proton affinity using nuclear electronic orbital-density functional theory: A Comprehensive Benchmark Study
Open the record for dataset details and reuse information.
Amara View Benchmark Study
ClinicalTrials.gov study NCT06535932. IPD Sharing: NO. Countries: 1. Publications: 0.
The Women TAF-FTC Benchmark Study
ClinicalTrials.gov study NCT05140954. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Identifying suitable experimental designs to determining differentially expressed genes and benchmark doses from transcriptomic dose-response studies in zebrafish embryos
GEO Series GSE230213. Danio rerio. 96 samples. Type: Expression profiling by high throughput sequencing.
Benchmark study of different chromatin isolation methods using the E2Fa transcription factor
GEO Series GSE53422. Arabidopsis thaliana. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dependability Benchmarking of soft-core processors at different levels of design representation: MC8051, AVR and Microblaze as a case study
<p>The dataset contains the results of fault injection experiments carried out for dependability benchmarking of three soft-core processors (MC8051, AVR, Microblaze) at three design representation levels:</p> <ol> <li>Register-transfer level (RTL) HDL model;</li> <li>Implementation-level HDL model (defined in the basis of Xilinx simprim library);</li> <li>Level of FPGA prototype (Xilinx Zynq XC7Z020);</li> </ol> <p>Fault injection experiments have been carried out by means of DAVOS toolkit (<a href="https://github.com/IlyaTuzov/DAVOS">https://github.com/IlyaTuzov/DAVOS</a>). </p> <p>Installation guide is attached (readme.pdf in the package root directory).</p> <p> </p>
Figure 2 from: Albratty M, Thangavel N, Chandrasekaran B, Meraya AM, Alhazmi HA, Muthumanickam S, Boomi P, Bhagavan NB, Saleh SF (2024) Benchmarking docking, density functional theory and molecular dynamics studies to assess the aldose reductase inhibitory potential of Trigonella foenum-graecum compounds for managing diabetes-associated complications. Pharmacia 71: 1-10. https://doi.org/10.3897/pharmacia.71.e118949
Figure 2 Benchmarking docking binding energy scores distribution: (a) AutoDock, (b) AutoDock Vina.
Tetrahedral Cu(I) Complexes for Thermally Activated Delayed Fluorescence: A Density Functional Benchmark Study with QM/MM Models
Open the record for dataset details and reuse information.
US Benchmarking Clinical Study
ClinicalTrials.gov study NCT07215715. IPD Sharing: NO. Countries: 1. Publications: 0.
Applied Cognition Benchmarking Study
ClinicalTrials.gov study NCT06222385. IPD Sharing: Not stated. Countries: 1. Publications: 0.
PAVES Benchmarking Pilot Study of Daily Disposable Contact Lenses
ClinicalTrials.gov study NCT04032457. IPD Sharing: NO. Countries: 1. Publications: 0.
Spine Surgery Video Observation Study. The Creation of a Benchmark Video (RGB-Depth) Dataset to Investigate the Feasibility of Developing a Markerless Tracking System for Spine Surgery.
ClinicalTrials.gov study NCT06580379. IPD Sharing: NO. Countries: 0. Publications: 0.
IEA PVPS Task 16 Satellite nowcasting benchmark : Dataset of animated satellite images for the selection of case studies
<p>This dataset contains animated satellite images used for the selection of case studies in the framework of the IEA PVPS task 16 satellite nowcasting benchmark. The animated images contains images from the channel 12 of MSG as well as NWC SAF products (cloud types and cloud top height) over France over the year 2020.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.