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ShareScore release 0.9.0
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56 results for “Biodiversity databases”
Supplementary material 12 from: Moore MR, Talamas EJ, Bremer JS, McGathey N, Fulton JC, Lahey Z, Awad J, Roberts CG, Combee LA (2023) Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs. NeoBiota 88: 169-210. https://doi.org/10.3897/neobiota.88.106326
Pairwise geographic hit comparisons for the Platygastroidea BIN, GBIF, and literature dataset
Supplementary material 15 from: Moore MR, Talamas EJ, Bremer JS, McGathey N, Fulton JC, Lahey Z, Awad J, Roberts CG, Combee LA (2023) Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs. NeoBiota 88: 169-210. https://doi.org/10.3897/neobiota.88.106326
Pairwise geographic hit comparisons for the Telenomus BIN, GBIF, and literature dataset
Supplementary material 11 from: Moore MR, Talamas EJ, Bremer JS, McGathey N, Fulton JC, Lahey Z, Awad J, Roberts CG, Combee LA (2023) Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs. NeoBiota 88: 169-210. https://doi.org/10.3897/neobiota.88.106326
Summary of intercontinental and island Platygastroidea BINs
Supplementary material 5 from: Moore MR, Talamas EJ, Bremer JS, McGathey N, Fulton JC, Lahey Z, Awad J, Roberts CG, Combee LA (2023) Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs. NeoBiota 88: 169-210. https://doi.org/10.3897/neobiota.88.106326
Platygastroidea COI dataset NJ tree annotated FIGTREE
Supplementary material 1 from: Moore MR, Talamas EJ, Bremer JS, McGathey N, Fulton JC, Lahey Z, Awad J, Roberts CG, Combee LA (2023) Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs. NeoBiota 88: 169-210. https://doi.org/10.3897/neobiota.88.106326
Country to continent and island group assignments
Supplementary material 10 from: Moore MR, Talamas EJ, Bremer JS, McGathey N, Fulton JC, Lahey Z, Awad J, Roberts CG, Combee LA (2023) Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs. NeoBiota 88: 169-210. https://doi.org/10.3897/neobiota.88.106326
Pairwise geographic hit comparisons for the Insecta BIN dataset
Figure 6 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 6 - WoRCS also includes images showing the significance of some cave species for local societies.
Figure 5 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 5 - Example of an image in WoRCS, showing the habitus and some aspects of the biology of a cave species.
Figure 4 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 4 - The WoRCS taxon details page includes taxonomic information, references, vernacular names and distribution data, along with a series of attributes gathering information about morphology, biology, reproduction and ecology of each cave species.
Linked collectors and determiners for: Biodiversity weekend observations, Recorder-Lux database.
Natural history specimen data linked to collectors and determiners held within, "Biodiversity weekend observations, Recorder-Lux database". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/b6dc7422-a09d-4986-b5ac-e8f6f50a9732">https://bionomia.net/dataset/b6dc7422-a09d-4986-b5ac-e8f6f50a9732</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/b6dc7422-a09d-4986-b5ac-e8f6f50a9732">https://gbif.org/dataset/b6dc7422-a09d-4986-b5ac-e8f6f50a9732</a>. Formatted as a Frictionless Data package.
Biodiversidata: An Open-Access Biodiversity Database for Uruguay
<p>We present a comprehensive database of tetrapod occurrence records native from Uruguay, with the latest taxonomic updates and geographic location accuracy. The dataset provides primary biodiversity data on extant Amphibia, Reptilia, Aves and Mammalia species recorded within the country area. The total number of records collated is 69,380, including 673 species. This is the largest and most geographically and taxonomically comprehensive database of Uruguayan tetrapod species available to date, and it represents the first open repository for the country.</p>
Figure 3 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 3 - Descriptions of the content of the WoRCS database.
Figure 1 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 1 - The WoRCS webpage.
Figure 2 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451
Figure 2 - The WoRCS search engine (advanced search option).
Database on biomass trade, production, demand, biodiversity proxies - CLEVER (D3.1)
<p>The database on biomass trade, production, demand, biodiversity proxies will be used in CLEVER future work to quantify the causal impacts of non-food biomass trade on biodiversity threat proxies through ex-post econometric assessments. More specifically, these data will allow us to estimate trader stickiness and trade substitution elasticities for selected products, evaluate biodiversity threats related to trade of non-food biomass from land, and assess biodiversity risks related to trade of biomass from sea.</p> <p>This database will be used as input to the empirical studies on how policy instruments and governance regimes moderate the impacts of land use and land cover change (LULCC), thus identifying leverage points for more effective biodiversity governance. To provide empirical estimates of critical parameters determining potential effects of trade, we use data from both various trading partners and several other publicly available data sources. Data were collected with the focus on the case studies proposed in CLEVER both in terms of countries and supply chains/sectors.</p>
Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs
<p>These are DWC text files, fasta files, excel files, and Newick tree files associated with scoring the Platygastroidea BOLD intercontinental and island BIN dataset. They are referenced in the paper, "Mining biodiversity databases establishes a global baseline of cosmopolitan Insecta mOTUs: a case study on Platygastroidea (Hymenoptera) with consequences for biological control programs".</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.