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69 results for “Brachypodium; Brachypodium distachyon”
Brachypodium distachyon (L.) P.Beauv. (BR0000011617228)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Brachypodium distachyon (L.) P.Beauv. (BR0000011617662)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Expression Analysis and Functional Characterization of CER1 Family Genes Involved in Very-LongChain Alkanes Biosynthesis in Brachypodium distachyon
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Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon
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Brachypodium distachyon identification of MeJA responsive genes in wild type and MTL-overexpression plants
GEO Series GSE124493. Brachypodium distachyon. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional and metabolomic analyses implicate cell wall changes are associated with drought tolerance in Brachypodium distachyon.
GEO Series GSE126992. Brachypodium distachyon. 45 samples. Type: Expression profiling by high throughput sequencing.
Real-time quantitative PCR analysis of PP2C genes in Brachypodium distachyon of different tissues and under multiple stresses
GEO Series GSE70366. Brachypodium distachyon. 35 samples. Type: Expression profiling by RT-PCR.
DNase-SEQ analysis of whole leaf and bundle sheath tissues in Zea mays, Sorghum bicolor, Setaria italica and Brachypodium distachyon.
GEO Series GSE97369. Setaria italica; Zea mays; Sorghum bicolor; Brachypodium distachyon. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparative RNA-sequencing of Brachypodium distachyon wild-type and bdmute developing leaf zones
GEO Series GSE201294. Brachypodium distachyon. 6 samples. Type: Expression profiling by high throughput sequencing.
Mowing Alters Nutrient Element Accumulation Patterns and Reprograms Root Transcriptional Regulation in Brachypodium distachyon Bd21
GEO Series GSE101500. Brachypodium distachyon. 6 samples. Type: Expression profiling by high throughput sequencing.
Epigenomic profiles of Brachypodium distachyon mutants deficient in RNA polymerase IV (Pol IV)
GEO Series GSE243693. Brachypodium distachyon. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA-Sequencing of 2,4-D treated Brachypodium distachyon roots containing NLS
GEO Series GSE97940. Brachypodium distachyon. 6 samples. Type: Expression profiling by high throughput sequencing.
Real-time quantitative PCR analysis of Brachypodium distachyon
GEO Series GSE66458. Brachypodium distachyon. 35 samples. Type: Expression profiling by RT-PCR.
Real-time quantitative PCR analysis of MAPK cascade genes in brachypodium distachyon of different tissues and under multiple stresses
GEO Series GSE66497. Brachypodium distachyon. 37 samples. Type: Expression profiling by RT-PCR.
differential expression analysis to hight co2 of the brachypodium distachyon-Differential expression of project NGS20_04_HIPATH
GEO Series GSE229886. Brachypodium distachyon. 9 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq profiling of ELF3 and PRR37 in Brachypodium Distachyon
GEO Series GSE147373. Brachypodium distachyon. 149 samples. Type: Expression profiling by high throughput sequencing.
Nitrogen source effect (ammonium and nitrate) on Brachypodium distachyon B21 root transcriptome
GEO Series GSE275962. Brachypodium distachyon. 6 samples. Type: Expression profiling by high throughput sequencing.
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
GEO Series GSE52441. Brachypodium distachyon. 19 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Data from: Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon
In eukaryotes, alternative splicing (AS) promotes transcriptome and proteome diversity. The extent of genome-wide AS changes occurring during a plant-microbe interaction is largely unknown. Here, using high-throughput, paired-end RNA sequencing, we generated an isoform-level spliceome map of Brachypodium distachyon infected with Panicum mosaic virus and its satellite virus. Overall, we detected ∼44,443 transcripts in B. distachyon, ∼30% more than those annotated in the reference genome. Expression of ∼28,900 transcripts was ≥2 fragments per kilobase of transcript per million mapped fragments, and ∼42% of multi-exonic genes were alternatively spliced. Comparative analysis of AS patterns in B. distachyon, rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum bicolor), Arabidopsis thaliana, potato (Solanum tuberosum), Medicago truncatula, and poplar (Populus trichocarpa) revealed conserved ratios of the AS types between monocots and dicots. Virus infection quantitatively altered AS events in Brachypodium with little effect on the AS ratios. We discovered AS events for >100 immune-related genes encoding receptor-like kinases, NB-LRR resistance proteins, transcription factors, RNA silencing, and splicing-associated proteins. Cloning and molecular characterization of SCL33, a serine/arginine-rich splicing factor, identified multiple novel intron-retaining splice variants that are developmentally regulated and modulated during virus infection. B. distachyon SCL33 splicing patterns are also strikingly conserved compared with a distant Arabidopsis SCL33 ortholog. This analysis provides new insights into AS landscapes conserved among monocots and dicots and uncovered AS events in plant defense-related genes.
Data from: Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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