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101
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Dataset results
101 results for “Circulation Modeling”
Dataset of "Annual Cycle of Gravity Wave Variability Derived from a High-Resolution Martian General Circulation Model" (2/3)
<p>This dataset contains the GrADS data of high-resolution Mars GCM results used for figures in the paper "Annual Cycle of Gravity Wave Variability Derived from a High-Resolution Martian General Circulation Model" by T. Kuroda, E. Yiğit and A.S. Medvedev.</p> <p>Each file contains two-dimensional (X: longitude, Y: latitude) data of surface pressure (Ps) and dust opacity in infrared wavelength (tau), and three-dimensional (X: longitude, Y: latitude, Z:sigma-level) data of temperature (T), zonal wind velocity (u), meridional wind velocity (v) and vertical wind velocity (w). Each tar.xz file contains snapshots of those data in every 1/6 Sol for Ls of 30 degrees.</p> <p>data090rdc.tar.xz: for Ls=090-120 (64 Sols)</p> <p>data120rdc.tar.xz: for Ls=120-150 (60 Sols)</p> <p>data150rdc.tar.xz: for Ls=150-180 (54 Sols)</p> <p>data180rdc.tar.xz: for Ls=180-210 (49 Sols)</p>
Dataset of "Annual Cycle of Gravity Wave Variability Derived from a High-Resolution Martian General Circulation Model" (1/3)
<p>This dataset contains the GrADS data of high-resolution Mars GCM results used for figures in the paper "Annual Cycle of Gravity Wave Variability Derived from a High-Resolution Martian General Circulation Model" by T. Kuroda, E. Yiğit and A.S. Medvedev.</p> <p>Each file contains two-dimensional (X: longitude, Y: latitude) data of surface pressure (Ps) and dust opacity in infrared wavelength (tau), and three-dimensional (X: longitude, Y: latitude, Z:sigma-level) data of temperature (T), zonal wind velocity (u), meridional wind velocity (v) and vertical wind velocity (w). Each tar.xz file contains snapshots of those data in every 1/6 Sol for Ls of 30 degrees.</p> <p>data000rdc.tar.xz: for Ls=000-030 (61 Sols)</p> <p>data030rdc.tar.xz: for Ls=030-060 (66 Sols)</p> <p>data060rdc.tar.xz: for Ls=060-090 (67 Sols)</p>
Nonkinematic solar dynamo models with double-cell meridional circulation
<p>MESA inlists for <a href="https://ui.adsabs.harvard.edu/#abs/2018JASTP.179..185P/abstract">Nonkinematic solar dynamo models with double-cell meridional circulation</a></p>
Effects of Horizontal Resolution on Long-Range Equatorward Radiation of Near-inertial Internal Waves in Ocean General Circulation Models
<p>Effects of Horizontal Resolution on Long-Range Equatorward Radiation of Near-inertial Internal Waves in Ocean General Circulation Models</p>
Non-hydrostatic MASNUM Ocean General Circulation Model codes and results
<p>non-hydro-masnum.rar: codes for Non-hydrostatic MASNUM Ocean General Circulation Model.</p> <p>analyze_test_section.mat: velocities in the section for the ideal experiment.</p> <p>analyze_test_variation.mat: variation of the velocity for the ideal experiment.</p> <p>res_hs_all_1.mat, res_hs_all_2.mat and res_hs_all_3.mat: hydrostatic MASNUM model simulation for the internal tides in the Northern South Chine Sea.</p> <p>res_it_all_1.mat, res_it_all_2.mat and res_it_all_3.mat: non-hydrostatic MASNUM model simulation for the internal tides in the Northern South Chine Sea.</p> <p>sst_01.mat, sst_02.mat and sst_03.mat: sea surface temperature simulation.</p>
SCM data for "Representing the subgrid surface heterogeneity of precipitation in a general circulation model"
<p>Single Column Model output from simulations described in the paper, "Representing the subgrid surface heterogeneity of precipitation in a general circulation model," by Nathan Arnold, Randal Koster, and Atanas Trayanov. </p>
Prognostic Model for Long-Term Cardiac Function After Pulmonary Embolism Based on Dynamic Electrocardial Signal and Circulating Biomarkers
ClinicalTrials.gov study NCT06541353. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Establishment and Application of 3-Dimensional (3-D) Cell Culture Model of Clinical Circulating Tumor Cells (CTCs)
ClinicalTrials.gov study NCT05623748. IPD Sharing: NO. Countries: 1. Publications: 3.
Prognostic Model of Postnatal Circulation in Pulmonary Atresia-critical Stenosis With Intact Ventricular Septum
ClinicalTrials.gov study NCT07095829. IPD Sharing: NO. Countries: 2. Publications: 0.
Data from: What's stirring in the reservoir? modelling mechanisms of henipavirus circulation in fruit bat hosts
Open the record for dataset details and reuse information.
Data from: Ocean circulation model predicts high genetic structure in a long-lived pelagic developer
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Forcing files and Model output for "Contrasting impacts of the South Pacific Split Jet and the Southern Annular Mode modulation on Southern Ocean circulation and biogeochemistry"
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VIIRS data and Ulmo model for comparison to the LLC4320 ECCO ocean general circulation model
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Single cell RNA-seq transcriptomic profile of circulating immune and progenitor cells in a mouse model of neonatal hypoxic/ischemic (HI) brain damage.
<p>Hematopoietic cells play a pivotal role in regulating the inflammatory and reparative immune responses triggered after ischemic tissue damage. The response initiated within the injured tissue leads to compositional and transcriptional changes in circulating hematopoietic and progenitor cells, which have been utilized as biomarkers. While the importance of different immune and progenitor cell subtypes in the development of ischemic damage has been extensively researched in adult tissue injuries, there has been limited investigation in neonates. This is a critical developmental stage where ischemic damage can result in severe and irreversible health consequences if not promptly treated. To determine how ischemic damage could affect circulating cells in neonates, we have induced hypoxic-ischemic (HI) brain damage in seven-day-old mice, characterized by focal white and gray-matter injury (Rice-Vannucci model). Brain damage and circulating cells were analyzed at 48h post-HI, the intermediate reparative/inflammatory response phase post-injury. We applied scRNAseq to dissect the transcriptional and cellular composition changes in the peripheral blood of HI-treated and SHAM control neonates. This study provides the first scRNAseq dataset for immune and progenitor circulating cells in newborns with cerebral HI damage. It may help to identify biomarkers and selective therapeutic approaches aimed at modulating inflammatory and reparative pathways. </p><p>CD1 postnatal day 7 (P7) mice were subjected to hypoxic/ischemic (HI) brain injury by permanent ligation of the left common carotid artery followed, after 2h recover, by relocation to a hypoxia chamber for 90 minutes. Sham control mice (SHAM) underwent a skin incision and wound closure followed by hypoxia exposure. Circulating blood cells were collected from SHAM and HI mice at P9. After red blood cells (RBC) lysis, 7AAD-Ter119- cells were FACS sorted and analysed using sc RNAseq. Other samples were FACS sorted for CD45+CD11+ and CD45-CD31+ cells and mixed.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: input files (3 of 3)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes the files necessary for nudging the currents towards Copernicus GLORYS12V1 reanalysis values in a simulation from 1 September to 31 December 2013.</p> <p>The remaining input files for this period are available at <a href="https://doi.org/10.5281/zenodo.12752190" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752190</a> and <a href="https://doi.org/10.5281/zenodo.12734049" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12734049</a>.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample output files (from the physics and biogeochemistry modules) are available at <a href="https://doi.org/10.5281/zenodo.12744506" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12744506</a> and <a href="https://doi.org/10.5281/zenodo.12746262" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12746262</a>.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: output files (1 of 2)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes daily-mean output of all (ocean circulation, sea ice, and biogeochemistry) modules for September 2013, when the simulation was initialized. Similar files for January 2015 are available at <a href="https://doi.org/10.5281/zenodo.12746262" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12746262</a>.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample input files for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752190" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752190</a>, <a href="https://doi.org/10.5281/zenodo.12734049" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12734049</a>, and <a href="https://doi.org/10.5281/zenodo.12735153" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12735153</a>. Input files for the biogeochemistry module are available upon request.</p>
Datasets accompanying Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer
<p>These datasets accompany the manuscript "Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer".</p> <p>The datasets include:</p> <ul> <li> <p><code>metadata.tsv.gz</code> Phenotype information of the samples</p> </li> <li> <p><code>mirna_counts.tsv.gz</code> MicroRNA count matrix (for data normalization)</p> </li> <li> <p><code>oncrna_counts.tsv.gz</code> oncRNA count matrix</p> </li> <li> <p><code>orion/</code> Ensemble of Orion models</p> </li> </ul>
Constitution of ex Vivo Ovarian Tumor Models for the Validation of the Interest of Innovative Therapies and the Search for Tumor or Circulating Biomarkers Predictive of Treatment Response
ClinicalTrials.gov study NCT03831230. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Early to Sustained Impacts of Lethal Radiation on Circulating miRNAs in a Minipig Model
GEO Series GSE244507. Sus scrofa. 30 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Use of Human Adult Stem Cell-Derived Organoid Cultures to Model Enterohepatic Circulation [Ileal organoids]
GEO Series GSE168005. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.