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58 results for “Clonal plants”
Supplementary material 1 from: Těšitelová T, Knotková K, Knotek A, Cempírková H, Těšitel J (2024) Root hemiparasites suppress invasive alien clonal plants: evidence from a cultivation experiment. NeoBiota 90: 97-121. https://doi.org/10.3897/neobiota.90.113069
Supplementary information
Supplementary material 2 from: Těšitelová T, Knotková K, Knotek A, Cempírková H, Těšitel J (2024) Root hemiparasites suppress invasive alien clonal plants: evidence from a cultivation experiment. NeoBiota 90: 97-121. https://doi.org/10.3897/neobiota.90.113069
Primary data table
Supplementary material 1 from: Zheng M-M, Pyšek P, Guo K, Hasigerili, Guo W-Y (2024) Clonal alien plants in the mountains spread upward more extensively and faster than non-clonal. NeoBiota 91: 29-48. https://doi.org/10.3897/neobiota.91.115675
Data used for the analysis
Lifespan, clonality and polyploidy regulate the global environmental niches of plants via seed dispersal in space and time
<p>Global environmental niches have been considered in relation to the effectiveness of environmental management. Functional traits can explain the environmental niches of plant species at different spatial scales, from community to globe. However, the roles of seed dispersal in space and time in plant environmental niche and tolerance are not clear. Furthermore, knowledge of the regulation of plants' global environmental niches by lifespan, clonality and polyploidy remains limited. In response, the main objective of the research reported here was to explore how these factors regulate the global environmental niches of plants via seed dispersal in space and time. We obtained data on plant species' seed mass, seed dispersal ability, dormancy, lifespan, clonality and polyploidy from a variety of databases and quantified global environmental niche and tolerance based on the niche axes of climate, soil and elevation. Subsequently, we used phylogenetic generalized least square linear regression and structural equation models to assess the relationships of seed traits (i.e. seed mass, seed dispersal distance and dormancy), lifespan, clonality and polyploidy with environmental niches. We found significant relationships between seed mass, seed dispersal distance, dormancy, lifespan, clonality and polyploidy on the one hand and environmental niche and tolerance on the other, based on the axes of climate, soil and elevation. Compared with lifespan, ploidy and clonality, seed traits explained more variations in environmental niches and tolerance for plants. Importantly, we built pathways indicating that lifespan, clonality and polyploidy regulate the global environmental niche and tolerance of plants via seed mass and/or seed dispersal in space and time. Our study clearly highlights the mechanisms underlying environmental niches from different perspectives, including seed temporal-spatial dispersal, lifespan, clonality and polyploidy. Environmental niche theory may broadly support global-change-adaptation management for biodiversity conservation and ecosystem maintenance using the perspective of spatial and temporal patterns in ecology.</p>
Dataset: Predicting and validating the spread of an exotic clonal plant under the current and future climate
<p>This repository contains the files associated with the following article:</p><p>Francisco A. Guerra-Coss, Ernesto I. Badano, Jesus Sandoval-Martínez, Joel Flores, Jorge A. Flores-Cano, Felipe Barragán-Torres, José L. Flores-Flores "Predicting future habitat invasibility for an exotic clonal plant in Mexico using climate niche models validated with field experiments", submitted to <i>Journal of Plant Ecology</i>. </p><p><strong>Supplementary material 01 - Climatic niche model data </strong>is<strong> </strong>a Microsoft Excel file with two spreadsheets. The first spreadsheet contains the presence-only data (latitude and longitude coordinates) used to calibrate the climate niche model of <i>Kalanchoe delagoensis</i> in Mexico, the near-to-present values of the 19 bioclimatic variables associated with these data, and the Spearman correlation coefficients used to select the variables included in the model (selected variables are indicated in green). The second spreadsheet contains the one-thousand random geographic coordinates projected on Mexico used to assess whether climate change will modify habitat invasibility for this plant species. For these geographic coordinates, the corresponding current and future invasibility values (occurrence probabilities) are provided on three time periods (2041-2060, 2061-2081 and 2081-2100) at four radiative forcing levels each (2.6, 4.5, 7.0 and 8.5 W/m2).</p><p><strong>Supplementary material 02 - MaxEnt output summary </strong>is a WinRAR compressed file (*.rar) that contains the summary of the MaxEnt output that support the results of the climate niche model described in the article. For visualizing this information, download and decompress the file and, after that, open the file "<strong>Kalanchoe_delagoensis.html</strong>" in your web browser. </p><p><strong>Supplementary material 03 – Interactive maps </strong>contains<strong> </strong>interactive maps optimized for the latest desktop version of Google Earth which show the invasibility estimations performed with the climate niche model under the current and future climate. These maps are provided in different the folders. The folder "<strong>Current climate</strong>" shows the invasibility of habitats across Mexico for <i>Kalanchoe delagoensis</i> under the current climatic conditions. The following folders contain the invasibility predictions performed transferring the model to the climate change scenarios forecasted for three time periods (2041-2060, 2061-2081 and 2081-2100) at four radiative forcing levels each (2.6, 4.5, 7.0 and 8.5 W/m2). The maps corresponding to climate change scenarios also show the areas classified as climatically unsuitable in the multivariate environmental similarity surface analysis. Further, clicking on the name of each map displays a dialog box that contains the results of the regression analyses conducted to assess relationships between future and current invasibility values. Below this information, the corresponding regression figure is visualized, where the red line is the empirical relationship between variables estimated with the least-squares method, and the solid blue line is the theoretical relationship with intercept = 0 and slope = 1. </p><p><strong>Supplementary material 04 - Plantlet establishment experiment </strong>is a Microsoft Excel file with two spreadsheets that support the experimental results reported in the article. The first spreadsheet contains the microclimatic data (air temperature and rainfall) measured in controls under the current climate and plots in which climate change conditions were simulated (CCS plots) with open-top chambers and rainout shelters. These data are provided over 14-days periods. The second spreadsheet contains the survival data of <i>Kalanchoe delagoensis</i> plantlets in controls and CCS plots. In this spreadsheet, the word "established" indicates that the plantlet survived until the end of the field experiment (24/06/2020).</p>
Lifespan, clonality and polyploidy regulate the global environmental niches of plants via seed dispersal in space and time
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Data from: Invasive alien plants benefit more from clonal integration in heterogeneous environments than natives
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Data from: Consequences of multiple inflorescences and clonality for pollinator behavior and plant mating
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Data from: Resource heterogeneity, soil fertility, and species diversity: effects of clonal species on plant communities
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Data from: Clonal genetic structure and diversity in populations of an aquatic plant with combined versus separate sexes
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The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction
GEO Series GSE238136. Lemna gibba; Lemna japonica; Lemna turionifera; Lemna minor; Wolffia australiana; Spirodela polyrhiza. 66 samples. Type: Methylation profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [WGS]
GEO Series GSE238135. Lemna gibba; Lemna japonica; Lemna turionifera; Lemna minor; Wolffia australiana. 17 samples. Type: Other.
Clonality and genetic structure of an endangered aquatic plant, Typha minima, in the French Alps: consequences for conservation
<p>Genetic data on Typha minima populations obtained with AFLP markers.</p> <p>The data was used in the article "Clonality and genetic structure of an endangered aquatic plant, Typha minima, in the French Alps: consequences for conservation, by Irène Till-Bottraud, Jacky Girel, Erwan Roussel, Delphine Rioux, Lucie Fiorese, Noémie Fort and published in Alpine Botany in 2022</p>
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [ChIP-Seq]
GEO Series GSE288765. Lemna minor; Lemna japonica; Lemna turionifera. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [smallRNA-Seq]
GEO Series GSE238134. Lemna japonica; Lemna gibba; Wolffia australiana; Spirodela polyrhiza. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [Hi-C]
GEO Series GSE238132. Lemna turionifera; Lemna gibba; Lemna japonica; Lemna minor; Wolffia australiana. 5 samples. Type: Other.
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [RNA-Seq]
GEO Series GSE238133. Lemna japonica; Lemna gibba. 2 samples. Type: Expression profiling by high throughput sequencing.
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [WGBS]
GEO Series GSE238131. Spirodela polyrhiza; Wolffia australiana; Lemna gibba; Lemna japonica. 6 samples. Type: Methylation profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.