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Dataset results
84 results for “Common model”
Data from: Examining temporal sample scale and model choice with spatial capture-recapture models in the common leopard Panthera pardus
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2012 growing season water table depth in common gardens:Specialization, maintenance of diversity and ecosystem consequences of growth defense trade-offs in a model system, the hyper-diverse willow communities of Cedar Creek
Cedar Creek includes a diversity of habitats, which support an astonishing number of species (15) from a single evolutionary lineage: the willow family (Salicaceae). The physiological tolerances and abiotic mechanisms that maintain natural diversity in this hyper-diverse system are beginning to be understood; the role of biotic interactions, however, remains a major gap in understanding. We hypothesize that insect herbivory plays a critical role in niche partitioning, providing an important explanation for high willow diversity. Using a replicated series of common gardens and insect herbivore manipulations in resource rich and resource poor habitats, we are testing for evolved trade-offs between defense investment and growth rate. We expect specialized plant syndromes to emerge along the continuum from ???herbivore escape??? via fast growth in high resource environments to ???anti-herbivore protection??? via heavy investment in defense in low resource environments. Evolved growth/defense strategies that promote diversity are also likely to have ecosystem consequences due to foliar chemical influences on decomposition and the composition and diversity of the insect communities they support. The proposed research takes advantage of natural diversity, providing an important model system at Cedar Creek.
Mapping of the dataset of the German National Regsitry for Rare Diseases (NARSE) to Observational Medical Outcomes Partnership Common Data Model (OMOP CDM)
<p>Mapping between the data set of the German National Registry for Rare Diseases ("Nationales Register für Seltene Erkrankungen"; <a href="https://www.narse.de/">NARSE</a>) to Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) using international standards.</p>
Supplementary material 7 from: Lommen STE, Jongejans E, Leitsch-Vitalos M, Tokarska-Guzik B, Zalai M, Müller-Schärer H, Karrer G (2018) Time to cut: population models reveal how to mow invasive common ragweed cost-effectively. NeoBiota 39: 53-78. https://doi.org/10.3897/neobiota.39.23398
Deterministic population models per reference data set (graphic results, population dynamics) :
Supplementary material 3 from: Lommen STE, Jongejans E, Leitsch-Vitalos M, Tokarska-Guzik B, Zalai M, Müller-Schärer H, Karrer G (2018) Time to cut: population models reveal how to mow invasive common ragweed cost-effectively. NeoBiota 39: 53-78. https://doi.org/10.3897/neobiota.39.23398
Burial experiments (location table, methods, graphic results) :
Supplementary material 5 from: Lommen STE, Jongejans E, Leitsch-Vitalos M, Tokarska-Guzik B, Zalai M, Müller-Schärer H, Karrer G (2018) Time to cut: population models reveal how to mow invasive common ragweed cost-effectively. NeoBiota 39: 53-78. https://doi.org/10.3897/neobiota.39.23398
Parametrisation of population models of experimental mowing treatments (model parameterisation) :
Supplementary material 4 from: Lommen STE, Jongejans E, Leitsch-Vitalos M, Tokarska-Guzik B, Zalai M, Müller-Schärer H, Karrer G (2018) Time to cut: population models reveal how to mow invasive common ragweed cost-effectively. NeoBiota 39: 53-78. https://doi.org/10.3897/neobiota.39.23398
Parametrisation of population models of unmanaged references (model parameterisation) :
Supplementary material 2 from: Lommen STE, Jongejans E, Leitsch-Vitalos M, Tokarska-Guzik B, Zalai M, Müller-Schärer H, Karrer G (2018) Time to cut: population models reveal how to mow invasive common ragweed cost-effectively. NeoBiota 39: 53-78. https://doi.org/10.3897/neobiota.39.23398
Demographic survey of reference populations (location table, methods) :
Supplementary material 1 from: Lommen STE, Jongejans E, Leitsch-Vitalos M, Tokarska-Guzik B, Zalai M, Müller-Schärer H, Karrer G (2018) Time to cut: population models reveal how to mow invasive common ragweed cost-effectively. NeoBiota 39: 53-78. https://doi.org/10.3897/neobiota.39.23398
Analysis of mowing experiment data (statistical analysis of empirical data) :
Data for Spangenberg, Simpkins and Wiegand "Species distribution modeling using commonness optimization leads to poor predictions for rare species"
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Data from: Morphological datasets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
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Fine-scale seascape genomics of an exploited marine species, the common cockle Cerastoderma edule, using a multi-modelling approach
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Humans and other commonly used model organisms are resistant to cycloheximide-mediated biases in ribosome profiling experiments
GEO Series GSE136940. Schizosaccharomyces pombe; Candida albicans; Homo sapiens; Saccharomyces cerevisiae. 33 samples. Type: Expression profiling by high throughput sequencing.
Integrative transcriptome and proteome profiling of insulin-resistant kidney cell models and patient biopsies reveals common and cell-type-specific mechanisms underpinning Diabetic Kidney Disease
GEO Series GSE262793. Homo sapiens. 80 samples. Type: Expression profiling by high throughput sequencing.
Toxicogenomics studies reveal common and specific pathways in pulmonary, hepatic, and neuronal cell models. [A549]
GEO Series GSE190100. Homo sapiens. 8 samples. Type: Expression profiling by array.
Transcriptome analysis of multiple obese mouse models to identify commonly unregulated genes in liver
GEO Series GSE188344. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Toxicogenomics studies reveal common and specific pathways in pulmonary, hepatic, and neuronal cell models.
GEO Series GSE190104. Homo sapiens. 16 samples. Type: Expression profiling by array.
Commonalities in gene expression and methylation changes across two rat models of acquired epilepsy [RRBS]
GEO Series GSE287822. Rattus norvegicus. 18 samples. Type: Methylation profiling by high throughput sequencing.
Transcriptional Survey of Alveolar Macrophages in a Murine Model of Chronic Granulomatous Inflammation Reveals Common Themes with Human Sarcoidosis
GEO Series GSE100500. Mus musculus. 12 samples. Type: Expression profiling by array.
Blocking common gamma chain cytokine signaling ameliorates T-cell-mediated pathogenesis in disease models
GEO Series GSE214625. Mus musculus; Homo sapiens. 77 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.