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142 results for “Cytochrome oxidase I”
Fig. 1 in Two Color Variants ofSternidius alpha(Say) (Coleoptera: Cerambycidae) Show Dissimilar Cytochrome Oxidase I Genes
Fig. 1. Location map of the Sternidius alpha specimens used in this study. The smaller circles denote a single specimen caught at those sites, while the bigger circles denote three specimens caught at those sites.
Figure 3. Tetractinellida cytochrome c oxidase subunit I in An unprecedented new genus and family of Tetractinellida (Porifera, Demospongiae) from New Zealand's Colville Ridge, with a new type of mitochondrial group I intron
Figure 3. Tetractinellida cytochrome c oxidase subunit I (COI) maximum likelihood (ML) trees reconstructed with RAxML under the generalized time-reversible Gamma – GTRGAMMA – model: 140 sequences At each key node, ML bootstrap supports (100 bootstrap replicates) and Bayesian posterior probabilities are given. There are two bootstrap supports: nucleotide analyses/amino-acid analyses (only bootstrap supports above 50 are shown). GenBank accession numbers are given after each taxon name. Presence of mitochondrial introns are given in the COI tree (the number given to each intron indicates its position with respect to the Amphimedon queenslandica complete COI as reference).
Figure 4. Bootstrap consensus neigbor-joining tree deduced from the cytochrome c oxidase subunit I in A revision of the Monopis monachella species complex (Lepidoptera: Tineidae) from China
Figure 4. Bootstrap consensus neigbor-joining tree deduced from the cytochrome c oxidase subunit I gene sequences. Numbers indicate bootstrap proportions (%).
Figure 5. Bootstrap consensus minimum evolution tree deduced from the cytochrome c oxidase subunit I in A revision of the Monopis monachella species complex (Lepidoptera: Tineidae) from China
Figure 5. Bootstrap consensus minimum evolution tree deduced from the cytochrome c oxidase subunit I gene sequences. Numbers indicate bootstrap proportions (%).
Figure 4 in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 4. Percentage of pairwise comparisons within each class of genetic distances (p-distance) for Hermeuptychia sequences calculated between (black bars) and within (grey bars) species. Species delimitation was based on the recursive partitioning ABGD analysis.
Figure 3. A in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 3. A, relationships from our phylogenetic analyses based on Bayesian inference. Support values> 50 are indicated with posterior probability values indicated above the branch and bootstrap values indicated below the branch. Names and morphology group symbols are as presented in Seraphim et al. (2014), 'ns' indicates new sequences, and numbers in parentheses indicate the number of species within clades as indicated by the ABGD (recursive partitioning) approach. B, relationships among Hermeuptychia species redrawn from the phylogeny presented in Seraphim et al. (2014), for comparison.
Figure 2 in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 2. Bayesian inference (BEAST2) tree for Hermeuptychia COI barcode sequences with posterior probabilities (top)> 0.5 and bootstrap values (bottom)> 50 indicated. Sequences generated in this study have voucher numbers beginning 'LEP' or 'IN' and are highlighted in blue. Species boundaries as indicated by the three most plausible implementations of each approach, bPTP (ML) (black), ABGD (recursive partitioning) (green) and GMYC (multiple thresholds) (grey), are illustrated as coloured bars on the side. * indicates groups that were recovered as one putative species but appear separated owing to the underlying phylogeny. Red vertical bars denote putative species that do not include an previously published sequences. Horizontal coloured bars and symbols beside sample voucher names denote morphology groupings identified in Seraphim et al. (2014).
FIGURE 5. Maximum likelihood tree built with concatenated matrix using cytochrome oxidase sub-united I in New species of Trichomycterus (Siluriformes: Trichomycteridae) lacking pelvic fins from Paranapanema basin, southeastern Brazil
FIGURE 5. Maximum likelihood tree built with concatenated matrix using cytochrome oxidase sub-united I (COI) and 16S genes, showing the relationships of Trichomycterus pascuali within Trichomycterinae. Numbers on branches of tree denote bootstrap (B) values.
FIGURE 3. Majority-rule consensus tree for 20002 in Recognition of a new species of Carmenta from New Mexico supported by morphology and mitochondrial cytochrome oxidase I data (Lepidoptera: Sesiidae: Sesiinae: Synanthedonini)
FIGURE 3. Majority-rule consensus tree for 20002 trees kept from the Bayesian analysis of 1 million generations using the morphological and DNA data. Posterior probabilities greater then 75% are shown.
FIGURE 2 in Recognition of a new species of Carmenta from New Mexico supported by morphology and mitochondrial cytochrome oxidase I data (Lepidoptera: Sesiidae: Sesiinae: Synanthedonini)
FIGURE 2. One of two most parsimonious trees found in a heuristic search. Numbers below the branches are bootstrap values. * = node resolved in the strict consensus of the most parsimonious trees.
FIGURE 1 in Recognition of a new species of Carmenta from New Mexico supported by morphology and mitochondrial cytochrome oxidase I data (Lepidoptera: Sesiidae: Sesiinae: Synanthedonini)
FIGURE 1. Collecting locations of Carmenta wildishorum, n. sp., along road NM-64 in Colfax County, New Mexico.
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Description of a new Kempnyia Klapálek from Brazil (Plecoptera: Perlidae) with life stages associated using DNA barcodes
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (450 bp) from Kempnyia KlapÁlek and related stoneflies from Rio de Janeiro, Brazil modeled by Kimura-2-parameter (K2P).
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Anacroneuria flintorum Froehlich 2002 (Plecoptera: Perlidae): Notes, distribution, and life stages association using molecular tools
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (433 bp) from Anacroneuria flintorum Froehlich and related stoneflies from Espírito Santo and São Paulo States, Brazil, modeled by Kimura-2-parameter (K2P).
Figure 7 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 7. Bayesian tree analysis of the COI (629 positions) data set of Hirudo species, with MrBayes v. 3.2.7.
Figure 8 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 8. Maximum likelihood phylogeny for Limnatis species based on COI sequences. Bootstrap values are shown for 1000 replicates.
Figure 3 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 3. Bayesian tree analysis of the COI (648 positions) data set of Glossiphonia species, with MrBayes v. 3.2.7.
Figure 9 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 9. Bayesian tree analysis of the COI (671 positions) data set of Limnatis species, with MrBayes v. 3.2.7.
Figure 5 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 5. Bayesian tree analysis of the COI (640 positions) data set of Helobdella species, with MrBayes v. 3.2.7.
Figure 1 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 1. Map of showing the areas surveyed for the occurrence of leeches. Wetlands where the species was found are indicated with dots.
Figure 6 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 6. Maximum likelihood phylogeny for Hirudo species based on COI sequences. Bootstrap values are shown for 1000 replicates.
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