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162 results for “DNA-barcoding”
FIGURE 8. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 8. N. troglodytes sp. nov., ♂ from Sanlou Dong Cave. A–B body, lateral and ventral views, respectively.
FIGURE 2 in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 2. Pictures of live animals. A N. troglodytes sp. nov. from Hejia Dong Cave. B N. lobata sp. nov. from Liangshui Dong Cave. C N. jinfoshan sp. nov. from Lingguan Dong Cave. D N. wangi sp. nov. from Qimenxia, I Dong Cave.
FIGURE 13. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 13. N. lobata sp. nov., ♂ paratype from Liangshui Dong Cave. A segment 15, dorsal view. B anterior gonopods, caudal view. C–D right posterior gonopod, caudal and frontal views, respectively. E ♀ paratype. vulva, ventral view. Abbreviations: cxi = coxite; c = colpocoxite; t1–t2 = telopoditomeres 1–2; op = operculum process.
FIGURE 20. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 20. N. wangi sp. nov., ♂ paratype from I Dong Cave. A-B gonopods, frontal and caudal views, respectively. Abbreviations: agp = anterior gonopods; c = colpocoxite; t1 = telopoditomere 1.
FIGURE 19. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 19. N. wangi sp. nov., ♂ paratype from I Dong Cave. A legs 3, caudal view. B legs 5, caudal view. C leg 10, caudal view. D legs 11, caudal view. Abbreviations: Cx = coxa; Pre = prefemur; Fem = femur; Post = postfemur; Tib = tibia; Tar = tarsus.
FIGURE 6. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 6. N. troglodytes sp. nov., ♂ from Feilong Dong Cave. A–B body, dorsal and subventral views, respectively.
FIGURE 1 in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 1. ML Tree calculated after the GTR model with gamma distribution. Numbers refer to bootstrap values. Each coloured box indicates a species. Scale bar = 0.1 substitutions/site.
FIGURE 9. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 9. N. troglodytes sp. nov., ♂ from Sanlou Dong Cave. A segment 15, dorsal view. B anterior gonopods, frontal view. C-D posterior gonopods, frontal and caudal views, respectively. E ♀ paratype. vulva, ventral view. Abbreviations: cxi = coxite; c = colpocoxite; t1–t2 = telopoditomeres 1–2; op = operculum process.
FIGURE 16. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 16. N. jinfoshan sp. nov., ♂ paratype from Houshan Dong Cave. A-B anterior gonopods, frontal and caudal views, respectively. C-D posterior gonopods, frontal and caudal views, respectively. Abbreviations: cxi = coxite; c = colpocoxite; t1 = telopoditomere 1.
FIGURE 10. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 10. N. lobata sp. nov., ♂ paratype from Liangshui Dong Cave. A–B body, dorsal and ventral views, respectively.
FIGURE 24. A in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 24. A distribution map of the genus Nepalella in China. 1 N. lobata sp. nov. 2 N. grandoides 3 N. marmorata 4 N. wangi sp. nov. 5 N. jinfoshan sp. nov. 6 N. grandis 7 N. troglodytes sp. nov. 8 N. caeca 9 N. kavanaughi 10 N. pianma 11 N. magna 12 N. griswoldi
FIGURE 23. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 23. N. grandoides Golovatch, Geoffroy & Mauriès, 2006. ♂ from Shuimen Dong Cave. A-B body, dorsal and ventral views, respectively.
FIGURE 3. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 3. N. troglodytes sp. nov., SEM, ♂ paratype from Hejia Dong Cave. A gnathochilarium, ventral view. B right mandible, general view. C antenna, lateral view. D antennomere 7 apical cones. E leg 3, frontal view. F tarsus 3, detail. G leg 10, frontal view. H coxa 10. I leg 11, caudal view. J prefemur 11. Abbreviations: lp = lateral palpus; ip = inner palpus; st = stipites; ll = lamellae linguales; m = mentum. et = external tooth; it = internal tooth; pl = pectinate lamellae; ia = intermediate area; mp = molar plate. a2–a7 = antennomeres 2–7. Cx = coxa; Pre = prefemur; Fem = femur; Pos = postfemur; Tib = tibia; Tar = tarsus; c = claw.
FIGURE 15. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 15. N. jinfoshan sp. nov., ♂ paratype from Houshan Dong Cave. A legs 5, frontal view. B legs 7, caudal view. C leg 10, frontal view. D leg 11, caudal view. Abbreviations: Tar = tarsus. Cx = coxa; Pre = prefemur.
FIGURE 11. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 11. N. lobata sp. nov., ♂ paratype from Liangshui Dong Cave. A legs 3, caudal view. B legs 4, caudal view. C legs 10, frontal view. D legs 11, caudal view. Abbreviations: Cx = coxa; Pre = prefemur; Fem = femur; Tar = tarsus.
FIGURE 12. N in Contributions to the millipede genus Nepalella Shear, 1979 from China, with four new species and first results on phylogeny based on DNA-barcoding (Diplopoda, Chordeumatida, Megalotylidae)
FIGURE 12. N. lobata sp. nov., ♂ paratype from Liangshui Dong Cave. A–B anterior gonopods, frontal and caudal views, respectively. C-D posterior gonopods, frontal and caudal views, respectively. Abbreviations: cxi = coxite; c = colpocoxite; t1– t2 = telopoditomeres 1–2.
Data from: MetaBARFcoding: DNA-barcoding of regurgitated prey yields insights into Christmas Shearwater (Puffinus nativitatis) foraging ecology at Hōlanikū (Kure Atoll), Hawaiʻi
<p>Morphological identification of digested prey remains from a generalist predator can be challenging, especially when attempting to match degraded remains to taxonomic keys. DNA techniques, whereby prey is sequenced and matched to large public nucleotide sequence databases, are increasingly being used to augment morphological identification. We used "metaBARFcoding" (DNA metabarcoding) to target a region of the cytochrome <i><u>c</u></i> oxidase subunit I mitochondrial gene to identify prey in highly-digested regurgitations from Christmas Shearwaters <i>Puffinus nativitatis </i>at Hōlanikū (Kure Atoll). Metabarcoding was used to bulk-process 92 water samples from regurgitations collected from 2009-2017, providing an overview of the seabird's diet. We additionally Sanger sequenced 100 prey items from 50 randomly chosen regurgitations to verify that metabarcoding characterized key components of the diet. The metabarcoding technique identified 87 unique taxa from 29 families of fish and squid, spanning diverse taxa, including reef-associated, pelagic-oceanic, and mesopelagic species. Rare prey (frequency of occurrence <u><</u> 5% of samples) constituted 66% of the species richness, demonstrating the highly diverse diet of this generalist predator. Overall, 81% of the families detected in the contemporary diet were previously documented in Christmas Shearwater diets from the Northwestern Hawaiian Islands. Our results indicate that metabarcoding the cytochrome <i>c</i> oxidase subunit I (COI) region is useful in identifying a wide range of taxa from highly digested regurgitations, thus facilitating this approach to study seabird diets.</p>
Supplementary material 1 from: Huemer P, Mutanen M (2015) Alpha taxonomy of the genus Kessleria Nowicki, 1864, revisited in light of DNA-barcoding (Lepidoptera, Yponomeutidae). ZooKeys 503: 89-133. https://doi.org/10.3897/zookeys.503.9590
Sample information for specimens used in this study.: Explanation note: Details of collecting data, images, sequences, and trace files for the barcoded specimens are available in the public BOLD dataset "DS-LEAKE", accessed at https://doi.org/10.5883/DS-LEAKE
FIGURE 101 in Deep-water bony fishes collected by the B/O Miguel Oliver on the shelf edge of Pacific Central America: an annotated, illustrated and DNA-barcoded checklist
FIGURE 101. Pseudoscopelus lavenbergi. Top: entire specimen; Bottom: detail of head; USNM 422507, 160 mm. SL.
FIGURE 96 in Deep-water bony fishes collected by the B/O Miguel Oliver on the shelf edge of Pacific Central America: an annotated, illustrated and DNA-barcoded checklist
FIGURE 96. Lycodapus dermatinus. Top: entire specimen; Bottom: detail of head; USNM 422332, 124 mm. SL.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.