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129 results for “Diversity dependence”
Plant size-dependent influence of foliar fungal pathogens promotes diversity through allometric growth
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Patterns of frequency and density dependence are highly variable in diverse annual flowering plant communities
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Biodiversity scale-dependence and opposing multi-level correlations underlie differences among taxonomic, phylogenetic, and functional diversity
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Impacts of flowering density on pollen dispersal and gametic diversity are scale dependent
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Eco-evolutionary dynamics modulate plant responses to global change depending on plant diversity and species identity
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Dataset from: Warming effects on grassland productivity depend on plant diversity
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Data from: Intraspecific variation mediates density dependence in a genetically diverse plant species
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Non-native species drive biotic homogenization, but it depends on the realm, beta diversity facet and study design: A meta-analytic systematic review
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Fungal symbiont diversity drives growth of Holcus lanatus depending on soil nutrient availability
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Data from: Soil fungal influence on the diversity-invasibility relationship depends on interacting species identities
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Tree diversity effects on soil microbial biomass and respiration are context-dependent across forest diversity experiments
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Data from: Scale dependence of bird diversity in London
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Data from: Functional diversity of phyllostomid bats in an urban-rural landscape: a scale-dependent analysis
<p>Urbanization is one of the most pervasive landscape transformational processes responsible for novel selection agents promoting functional community homogenization. Bats may persist in those human environments, but the mechanisms responsible for their adaptability and the spatial scales in which landscape imposes environmental filtering remain poorly studied in the Neotropics. We tested the hypothesis that landscape composition interacts with the spatial scale to affect the functional diversity of phyllostomids in an urban-rural gradient. Based on functional traits, we calculated indices of functional richness, divergence, evenness, community-weighted means of morphological traits, and classified species into functional groups. We evaluated the changes of those variables in response to forest, grassland, and urbanized areas at 0.5, 1.25 and, 2 km scales. The number of functional groups, functional richness, and functional evenness tended to be higher in areas far from cities and with higher forest cover, whereas functional divergence increased in more urbanized areas. Our results show that the mean value of wing loading in the assemblage was negatively associated to landscape transformation at several spatial scales. However, environmental filtering driven by grass cover was particularly robust at the 500 m scale, affecting big-sized species with long pointed wings. Retaining natural forest in cattle ranging systems at ~12 km<sup>2</sup> appears to favor bat abundance evenness among functional types in the urban-rural landscape. Recognizing the scale of the effect on phyllostomid functional responses appears to be a fundamental issue for elucidating the spatial extent to which phyllostomid conservation planning in urban-rural landscapes should be addressed.</p>
Data from: Iterative adaptive radiations of fossil canids show no evidence for diversity-dependent trait evolution
A long-standing hypothesis in adaptive radiation theory is that ecological opportunity constrains rates of phenotypic evolution, generating a burst of morphological disparity early in clade history. Empirical support for the early burst model is rare in comparative data, however. One possible reason for this lack of support is that most phylogenetic tests have focused on extant clades, neglecting information from fossil taxa. Here, I test for the expected signature of adaptive radiation using the outstanding 40-My fossil record of North American canids. Models implying time- and diversity-dependent rates of morphological evolution are strongly rejected for two ecologically important traits, body size and grinding area of the molar teeth. Instead, Ornstein–Uhlenbeck processes implying repeated, and sometimes rapid, attraction to distinct dietary adaptive peaks receive substantial support. Diversity-dependent rates of morphological evolution seem uncommon in clades, such as canids, that exhibit a pattern of replicated adaptive radiation. Instead, these clades might best be thought of as deterministic radiations in constrained Simpsonian subzones of a major adaptive zone. Support for adaptive peak models may be diagnostic of subzonal radiations. It remains to be seen whether early burst or ecological opportunity models can explain broader adaptive radiations, such as the evolution of higher taxa.
Data from: The good, the bad and the Ulva: the density dependent role of macroalgal subsidies in influencing diversity and trophic structure of an estuarine community
Worldwide, ecological subsidies enhance ecosystem productivity and therefore trophic support for greater biodiversity of taxa. While studies in terrestrial and aquatic ecosystems demonstrate that the magnitude of subsidies into ecosystems differs widely, the thresholds where subsidies may switch from exerting positive to negative effects are poorly understood. In estuaries, eutrophication promotes drift macroalgae that deposit on the benthos, cover intertidal flats for months and serve as pressed resource subsidies for benthic consumers. We hypothesized there would be a critical threshold of macroalgal biomass where ecosystem-level effects would turn from positive to negative. We used manipulative field experiments varying macroalgal mat thickness (0.5, 1.5 and 4 cm) over eight weeks and quantified effects on macrofauna on a lagoon mudflat in California. We documented that plots with mat depths of 0.5 and 1.5 cm had higher diversity by supporting both surface feeding and burrowing detritivores. Non-metric multidimensional scaling showed that the benthic community diverged with mat depth over the course of the experiment. After eight weeks, surface deposit feeders were associated mainly with 0.5 cm macroalgal subsidies, whereas subsurface deposit feeding capitellids were closely linked with 4 cm mats. Depth profiles of pore water sulfide concentration collected from 4 cm mats were 7622 ± 5294 μM, mean ± s.e., (mean of means across depth profiles), whereas 0.5 cm treatments resulted in sulfide concentrations that were 0.25% of the 4 cm treatments. This suggests that the mechanism of negative effects for elevated macroalgal subsidies was development of anoxic conditions promoting sulfide accumulation. Thus, our study was the first to find a critical threshold, or ecological tipping point, beyond which the effects of anthropogenically enhanced subsidies to estuarine mudflat communities switched from positive to negative and to describe the mechanism by which elevated subsides altered the abiotic environment and likely reduced ecosystem functioning.
Data from: Direct evidence that density-dependent regulation underpins the temporal stability of abundant species in a diverse animal community
To understand how ecosystems are structured and stabilized, and to identify when communities are at risk of damage or collapse, we need to know how the abundances of the taxa in the entire assemblage vary over ecologically meaningful timescales. Here, we present an analysis of species temporal variability within a single large vertebrate community. Using an exceptionally complete 33-year monthly time series following the dynamics of 81 species of fishes, we show that the most abundant species are least variable in terms of temporal biomass, because they are under density-dependent (negative feedback) regulation. At the other extreme, a relatively large number of low abundance transient species exhibit the greatest population variability. The high stability of the consistently common high abundance species—a result of density-dependence—is reflected in the observation that they consistently represent over 98% of total fish biomass. This leads to steady ecosystem nutrient and energy flux irrespective of the changes in species number and abundance among the large number of low abundance transient species. While the density-dependence of the core species ensures stability under the existing environmental regime, the pool of transient species may support long-term stability by replacing core species should environmental conditions change.
Data from: Functional diversity loss with increasing livestock grazing intensity in drylands: the mechanisms and their consequences depend on the taxa
1. Overgrazing is one of the main drivers of desertification in drylands, and livestock production is expected to increase in the next decades. The analysis of functional diversity can clarify the effects of increasing livestock grazing on ecosystem functioning. 2. We assess the effect of livestock grazing intensity on the relationship between taxonomic (TDH) and functional diversity (FDQ) of plants, ants and small mammals, as well as on within-trait diversity. We compared results using two indices of taxonomic diversity (Shannon and Simpson). We used structural equation modelling (SEM) to assess the causal relationship between grazing intensity, TDH, FDQ and decomposition rate for each taxa. 3. Correlation between TDH vs. FDQ varied across assemblages and seasons, but was consistent between different indices of taxonomic diversity. A similar trajectory of TDH vs. FDQ under land-use intensification was found for all taxa, with a correlated loss of species and functional traits. Also, within-trait diversity was negatively affected by increasing grazing pressure. Vegetation and small mammal SEM models show that increasing grazing intensity had a strong and direct effect on decomposition rate. The ant SEM model was the only one that showed an indirect effect of grazing on decomposition through FDQ. TDH had no effect on decomposition for either taxa. 4. We found higher niche differentiation in animal than in plant assemblages. In vegetation, several species seem to have similar trait diversity (i.e. redundancy), perhaps due to a dominant role of environmental constraints. These results were consistent among diversity indices. But increasing disturbance negatively affected TDH vs. FDQ in all assemblages in a similar way. Livestock grazing affected decomposition rate directly, and indirectly only through the effect of ants FDQ. 5. Synthesis and applications. Under increasing grazing intensity all plant and animal assemblages respond with a mirrored reduction in taxonomic and functional diversity, although vegetation seems to have higher functional redundancy. Our results are robust to diversity indices, showing that several taxa respond similarly to land-use intensification, despite differences in the mechanism behind it. This may facilitate sustainable management. Notably, increasing grazing intensity affects decomposition rate through a stronger direct than indirect effect. The stronger direct effect of livestock on decomposition rate, rather than indirectly through functional diversity, suggests that changes in structure may be more important than changes in community composition.
Data from: Impacts of grazing by different large herbivores in grassland depend on plant species diversity
1. It is well documented that large herbivores have pronounced effects on plant communities in grassland ecosystems, and the extent and course of their effects can largely depend on both plant and herbivore characteristics. Previous studies highlighted the importance of plant productivity in predicting the impact of herbivores on grasslands. Yet, there has been little consideration of how different herbivores affect plant communities that, in turn, differ in plant diversity. 2. In a 2-year grazing experiment, we tested the effects of large herbivores (cattle or sheep, or both together) on plant communities under high and low plant diversity levels in eastern Eurasian steppe. 3. We found that, for high plant diversity grassland, mixed grazing by cattle and sheep significantly increases plant diversity, but we found no effect of grazing by cattle or sheep alone. Grazing by cattle or sheep alone or mixed grazing by cattle and sheep did not significantly affect plant biomass in the high diversity grassland. However, for low plant diversity grassland, grazing by cattle alone and mixed grazing by cattle and sheep significantly increased plant diversity, but significantly decreased plant biomass. There was no significant impact on both plant diversity and biomass from sheep grazing. 4. Synthesis and applications. We conclude that the effects of grazing in grassland strongly depend on herbivore assemblages and pre-grazing plant diversity. Herbivore grazing might contribute more to the maintenance of grassland structure and ecosystem functioning under high plant diversity compared with low plant diversity. Furthermore, our data suggest that multiple-species mixed grazing regimes in grassland systems with high plant diversity could represent the optimal protocol for grazing management. This study emphasizes the importance of maintaining both plant and herbivore diversity to optimize ecosystem functioning.
Data from: Benefits of increased colonist quantity and genetic diversity for colonization depend on colonist identity
Larger numbers of colonists can be more likely to establish and spread due to the benefits provided by either more individuals (quantity) or a greater diversity of genotypes or phenotypes (genetic diversity). However, the value of higher colonist quantity or genetic diversity varies widely across studies, leaving a great deal of uncertainty in how these respective mechanisms affect colonization success. This variability is potentially driven by differences in which traits are present in respective colonist pools ('colonist identity'). Studies with high-performing colonizers (e.g. genotypes pre-adapted to the colonizing environment) may find increasing quantity or diversity to be beneficial because it increases the chance high-performers are sampled, while studies with no high-performers may find no effects of quantity or diversity. Alternatively, quantity and genetic diversity may play little to no role if the smallest populations already contain high-performing colonists because there is no scope for a sampling effect to operate. We conducted a field mesocosm experiment to determine if variability in the benefits provided by increased quantity or genetic diversity relates to colonist traits. Nine distinct genotypes of <i>Daphnia pulex</i>, characterized also by phenotype, were introduced in 'single' (one individual) or 'many' (nine individuals) introduction quantities and at 'low' (monoclonal) and 'high' (mixed genotypes) genetic diversities. We found that larger-bodied <i>D. pulex</i> genotypes benefited less from increased colonist quantity, while increasing genetic diversity tended to have a lower effect on higher growth rate genotypes. Our results show that the trait values of the colonists can determine the benefits gained when colonist quantity or genetic diversity are increased, with potential applications to future research and practical efforts to promote, or prevent, population establishment.
Data from: Fungal disease incidence along tree diversity gradients depends on latitude in European forests
European forests host a diversity of tree species that are increasingly threatened by fungal pathogens, which may have cascading consequences for forest ecosystems and their functioning. Previous experimental studies suggest that foliar and root pathogen abundance and disease severity decrease with increasing tree species diversity, but evidences from natural forests are rare. Here, we tested whether foliar fungal disease incidence was negatively affected by tree species diversity in different forest types across Europe. We measured the foliar fungal disease incidence on 16 different tree species in 209 plots in six European countries, representing a forest-type gradient from the Mediterranean to boreal forests. Forest plots of single species (monoculture plots) and those with different combinations of two to five tree species (mixed species plots) were compared. Specifically, we analyzed the influence of tree species richness, functional type (conifer vs. broadleaved) and phylogenetic diversity on overall fungal disease incidence. The effect of tree species richness on disease incidence varied with latitude and functional type. Disease incidence tended to increase with tree diversity, in particular in northern latitudes. Disease incidence decreased with tree species richness in conifers, but not in broadleaved trees. However, for specific damage symptoms, no tree species richness effects were observed. Although the patterns were weak, susceptibility of forests to disease appears to depend on the forest site and tree type.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.