Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
134
datasets available to search
ShareScore release 0.9.0
Dataset results
134 results for “Ecosystem structure”
Arthropod predation of vertebrates structures trophic dynamics in island ecosystems
Open the record for dataset details and reuse information.
Apex predators can structure ecosystems through trophic cascades: linking the frugivorous behaviour and seed-dispersal patterns of mesocarnivores
Open the record for dataset details and reuse information.
Differential effects of ecosystem engineering by the superb lyrebird Menura novaehollandiae and herbivory by large mammals on floristic regeneration and structure in wet eucalypt forests
Open the record for dataset details and reuse information.
Parasites disrupt a keystone mutualism that underpins the structure, functioning, and resilience of a coastal ecosystem
Open the record for dataset details and reuse information.
Consumer movement dynamics as hidden drivers of stream habitat structure: suckers as ecosystem engineers on the night shift
Open the record for dataset details and reuse information.
Data from: Structure and function of restored and natural salt marshes: Implications for ecosystem resilience and adaptive potential
Open the record for dataset details and reuse information.
Effects of an invasive top predator on Ecosystem structure and function in a Graminoid Marsh food web
Open the record for dataset details and reuse information.
SGS-LTER Effects of grazing on ecosystem structure and function (GZTX): Vegetation basal cover on the Central Plains Experimental Range, Nunn, Colorado, USA 1992-2011, ARS Study Number 32
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. When the CPER was established in 1939, researchers constructed a .5-1 ha grazing exclosure in each of the pastures. These areas have remained protected from grazing for the past 70 years. The remaining areas have been grazed for the past 20+ years. This collection of pastures and exclosures provided an extraordinary opportunity to reinitiate grazing and protection, and evaluate the balance between degradation and aggradation. We proposed to rearrange fences and expose areas to grazing that have been protected for 50 years, and protect areas from grazing that had been grazed for 50 years. The combinations of grazing conditions were: 1. Long-term protection 2. Long-term grazing (moderate) 3. 50 years of protection followed by grazing 4. 50 years of grazing followed by protection Net primary production, nitrogen dynamics, cattle utilization, and community dynamics of vegetation were measured. Additional information and referenced materials can be found: http://hdl.handle.net/10217/85596.
SGS-LTER Effects of grazing on ecosystem structure and function (GZTX): Bite Counts on the Central Plains Experimental Range, Nunn, Colorado, USA 1993-2008, ARS Study Number 32
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. When the CPER was established in 1939, researchers constructed a .5-1 ha grazing exclosure in each of the pastures. These areas have remained protected from grazing for the past 70 years. The remaining areas have been grazed for the past 20+ years. This collection of pastures and exclosures provided an extraordinary opportunity to reinitiate grazing and protection, and evaluate the balance between degradation and aggradation. We proposed to rearrange fences and expose areas to grazing that have been protected for 50 years, and protect areas from grazing that had been grazed for 50 years. The combinations of grazing conditions were: 1. Long-term protection 2. Long-term grazing (moderate) 3. 50 years of protection followed by grazing 4. 50 years of grazing followed by protection Net primary production, nitrogen dynamics, cattle utilization, and community dynamics of vegetation were measured. Additional information and referenced materials can be found: http://hdl.handle.net/10217/85596.
SGS-LTER Effects of grazing on ecosystem structure and function (GZTX): Vegetation density on the Central Plains Experimental Range, Nunn, Colorado, USA 1992-2008, ARS Study Number 32
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. When the CPER was established in 1939, researchers constructed a .5-1 ha grazing exclosure in each of the pastures. These areas have remained protected from grazing for the past 70 years. The remaining areas have been grazed for the past 20+ years. This collection of pastures and exclosures provided an extraordinary opportunity to reinitiate grazing and protection, and evaluate the balance between degradation and aggradation. We proposed to rearrange fences and expose areas to grazing that have been protected for 50 years, and protect areas from grazing that had been grazed for 50 years. The combinations of grazing conditions were: 1. Long-term protection 2. Long-term grazing (moderate) 3. 50 years of protection followed by grazing 4. 50 years of grazing followed by protection Net primary production, nitrogen dynamics, cattle utilization, and community dynamics of vegetation were measured. Additional information and referenced materials can be found: http://hdl.handle.net/10217/85596.
SGS-LTER Effects of grazing on ecosystem structure and function (GZTX): Nitrogen concentration of vegetation on the Central Plains Experimental Range, Nunn, Colorado, USA 1992-2011, ARS Study Number 32
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. When the CPER was established in 1939, researchers constructed a .5-1 ha grazing exclosure in each of the pastures. These areas have remained protected from grazing for the past 70 years. The remaining areas have been grazed for the past 20+ years. This collection of pastures and exclosures provided an extraordinary opportunity to reinitiate grazing and protection, and evaluate the balance between degradation and aggradation. We proposed to rearrange fences and expose areas to grazing that have been protected for 50 years, and protect areas from grazing that had been grazed for 50 years. The combinations of grazing conditions were: 1. Long-term protection 2. Long-term grazing (moderate) 3. 50 years of protection followed by grazing 4. 50 years of grazing followed by protection Net primary production, nitrogen dynamics, cattle utilization, and community dynamics of vegetation were measured. Additional information and referenced materials can be found: http://hdl.handle.net/10217/85596.
SGS-LTER Effects of grazing on ecosystem structure and function (GZTX): Net Primary Production on the Central Plains Experimental Range, Nunn, Colorado, USA 1992-2011, ARS Study Number 32
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. When the CPER was established in 1939, researchers constructed a .5-1 ha grazing exclosure in each of the pastures. These areas have remained protected from grazing for the past 70 years. The remaining areas have been grazed for the past 20+ years. This collection of pastures and exclosures provided an extraordinary opportunity to reinitiate grazing and protection, and evaluate the balance between degradation and aggradation. We proposed to rearrange fences and expose areas to grazing that have been protected for 50 years, and protect areas from grazing that had been grazed for 50 years. The combinations of grazing conditions were: 1. Long-term protection 2. Long-term grazing (moderate) 3. 50 years of protection followed by grazing 4. 50 years of grazing followed by protection Net primary production, nitrogen dynamics, cattle utilization, and community dynamics of vegetation were measured. Additional information and referenced materials can be found: http://hdl.handle.net/10217/85596.
Supplementary material 1 from: Grace JB (2020) A 'Weight of Evidence' approach to evaluating structural equation models. One Ecosystem 5: e50452. https://doi.org/10.3897/oneeco.5.e50452
This text file contains the R code used to develop the demonstrations included in Grace JB (2020) A 'weight of evidence' approach to evaluating structural equation models. One Ecosystem
Data from: Contrasting patterns of population structure at large and fine scales in an avian disturbance specialist of braided river ecosystems
Aim: To understand the population structure and its potential drivers at different spatial scales in a migratory bird, the black-fronted tern (Chlidonias albostriatus); a specialist of the spatially and temporally dynamic environments of braided rivers. Location: New Zealand Methods: We used a three-pronged approach based on 17 microsatellites, two mitochondrial loci (cytochrome b / control region), and phenotypic data (head-bill length, bill depth, wing length, weight). We determined large-scale genetic structure throughout the whole breeding range (approx. 150,000 km2), calculated genetic divergence of breeding populations, and tested for isolation-by-distance between populations. We investigated the level of fine-scale genetic structure based on spatial autocorrelation analyses and assessed the presence of a body size cline based on phenotypic data. Lastly, we compared phenotypic divergence (PST) and the level of divergence by genetic drift (FST) among breeding populations to test for underlying mechanisms of population differentiation. Results: Nuclear and mitochondrial DNA showed that across their range black-fronted terns were effectively panmictic, with low genetic divergence between breeding colonies overall and no isolation-by-distance. However, at fine geographical scales black-fronted terns accrued significant genetic structure for distances up to 75 km, primarily driven by males, indicating more frequent female dispersal. Furthermore, a phenotypic cline in accordance with Bergmann's rule was evident. PST exceeded FST in three traits, suggestive of local adaptation. Main conclusions: Significant fine-scale structure can be present in highly mobile, specialist species while not affecting spatial structures at larger scales. Hence, methodologies applied to both whole landscapes and local scales are important to appropriately estimate connectivity in dynamic metapopulations and investigate the processes behind connectivity. Conservation management will need to include protecting currently uninhabited patches to facilitate natural colonisation of suitable habitat. For black-fronted terns, managing whole catchments throughout the entire breeding range would be preferable to managing single patches.
Data from: New forms of structure in ecosystems revealed with the Kuramoto model
<p>This is the general Mathematica code for the article, "New forms of structure in ecosystems revealed with the Kuramoto model" by Vandermeer, Hajian-Forooshani, Medina and Perfecto. All results presented in the article can be obtained by running the code with appropriate parameter settings.</p>
Data from: Plant controls on Late Quaternary whole ecosystem structure and function
Plants and animals influence biomass production and nutrient cycling in terrestrial ecosystems; however their relative importance remains unclear. We assessed the extent to which mega-herbivore species controlled plant community composition and nutrient cycling, relative to other factors during and after the Late Quaternary extinction event in Britain and Ireland, when two-thirds of the region's mega-herbivore species went extinct. Warmer temperatures, plant-soil and plant-plant interactions, and reduced burning contributed to the expansion of woody plants and declining nitrogen availability in our five study ecosystems. Shrub biomass in particular was consistently one of the strongest predictors of ecosystem change, equaling or exceeding the effects of other biotic and abiotic factors. In contrast, there was relatively little evidence for mega-herbivore control on plant community composition and nitrogen availability. The ability of plants to determine the fate of terrestrial ecosystems during periods of global environmental change may therefore be greater than previously thought.
Data from: Do differences in food web structure between organic and conventional farms affect the ecosystem service of pest control?
While many studies have demonstrated that organic farms support greater levels of biodiversity, it is not known whether this translates into better provision of ecosystem services. Here we use a food-web approach to analyse the community structure and function at the whole-farm scale. Quantitative food webs from 10 replicate pairs of organic and conventional farms showed that organic farms have significantly more species at three trophic levels (plant, herbivore and parasitoid) and significantly different network structure. Herbivores on organic farms were attacked by more parasitoid species on organic farms than on conventional farms. However, differences in network structure did not translate into differences in robustness to simulated species loss and we found no difference in percentage parasitism (natural pest control) across a variety of host species. Furthermore, a manipulative field experiment demonstrated that the higher species richness of parasitoids on the organic farms did not increase mortality of a novel herbivore used to bioassay ecosystem service. The explanation for these differences is likely to include inherent differences in management strategies and landscape structure between the two farming systems.
Data from: The influence of fire frequency on the structure and botanical composition of savanna ecosystems
Savannas cover 60% of the land surface in Southern Africa, with fires and herbivory playing a key role in their ecology. The Limpopo National Park (LNP) is a 10,000 km2 conservation area in southern Mozambique and key to protecting savannas in the region. Fire is an important factor in LNP's landscapes, but little is known about its role in the park's ecology. In this study, we explored the interaction between fire frequency (FF), landscape and vegetation. To assess the FF, we analysed ten years of the MODerate resolution Imaging Spectroradiometer (MODIS) burned area product (2003-2013). A stratified-random sampling approach was used to assess biodiversity across three dominant landscapes (Nwambia Sandveld-NS, Lebombo North-LN and Shrubveld Mopane on Calcrete-C) and two FF levels (low - twice or less; and high - 3 times or more, during 10 years). Six ha were sampled in each stratum, except for the LN vs High FF in which low accessibility allowed only 3 ha sampling. FF was higher in NS and LN landscapes, where 25% and 34% of the area, respectively burned more than three times in 10 years. The landscape type was the main determinant of grass composition and biomass. However, in the sandy NS biomass was higher under high FF. The three landscapes supported three different tree/shrub communities, but FF resulted in compositional variations in NS and LN. Fire frequency had no marked influence on woody structural parameters (height, density and phytomass). We concluded that the savannas in LNP are mainly driven by landscape (geology), but FF may impose specific modifications. We recommend a fire laissez-faire management system for most of the park and a long-term monitoring system of vegetation to address vegetation changes related to fire. Fire management should be coordinated with the neighboring Kruger National Park, given its long history of fire management.
Data from: Genetic diversity and population structure of Varronia curassavica: a medicinal polyploid species in a threatened ecosystem
Varronia curassavica is an important medicinal species associated with the restinga, one of the most threatened coastal ecosystems of the Atlantic Forest. These circumstances call for studies aimed at estimating effective population size and gene flow to improve conservation efforts. Hence, the present study aimed to characterize the genetic diversity, ploidy level and population structure of this species in different areas of restinga using microsatellites. Varronia curassavica was characterized as an autotetraploid, with high genetic variability, low divergence, and no significant fixation indices, indicating the absence of, or reduced, inbreeding and genetic drift in the study area. About 44 % of the alleles occurred at low frequency in adults of all populations and 41 % in the progenies evaluated. Gene flow was high, consistent with outcrossing species with high dispersal capacity (Nm = 4.87). The results showed no tendency toward isolation by distance. The estimated effective size indicates that the populations studied have the potential to ensure conservation of the species in the long term. The genetic variability and population structure of V. curassavica, as determined in this study, could form the foundation for activities directed toward the sustainable use of this resource and its conservation. Even though the restinga ecosystem has suffered dramatic reductions in area, this study provides evidence that this species is resilient to anthropogenic threats to its genetic integrity, since it is a polyploid with self-incompatibility mechanisms that contribute to maintaining high genetic diversity in an panmictic meta-population along the coast of Santa Catarina.
Data from: The effects of food web structure on ecosystem function exceeds those of precipitation
Ecosystems are being stressed by climate change, but few studies have tested food web responses to changes in precipitation patterns and the consequences to ecosystem function. Fewer still have considered whether results from one geographic region can be applied to other regions, given the degree of community change over large biogeographic gradients. We assembled, in one field site, three types of macroinvertebrate communities within water-filled bromeliads. Two represented food webs containing both a fast filter feeder-microbial and slow detritivore energy channels found in Costa Rica and Puerto Rico, and one represented the structurally simpler food webs in French Guiana, which only contained the fast filter feeder-microbial channel. We manipulated the amount and distribution of rain entering bromeliads, and examined how food web structure mediated ecosystem responses to changes in the quantity and temporal distribution of precipitation. Food web structure affected the survival of functional groups in general, and ecosystem functions such as decomposition and the production of fine particulate organic matter. Ecosystem processes were more affected by decreased precipitation than were the abundance of microorganisms and metazoans. In our experiments, the sensitivity of the ecosystem to precipitation change was primarily revealed in the food web dominated by the single filter feeder-microbial channel because other top-down and bottom-up processes were weak or absent. Our results show stronger effects of food web structure than precipitation change per se on the functioning of bromeliad ecosystems. Consequently, we predict that ecosystem function in bromeliads throughout the Americas will be more sensitive to changes in the distribution of species, rather than to the direct effects caused by changes in precipitation.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.