Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
102
datasets available to search
ShareScore release 0.9.0
Dataset results
102 results for “GBs”
Data from: Comparing methods for SNP calling from Genotyping-By-Sequencing (GBS) data for a large-genome conifer without a published genome sequence
Open the record for dataset details and reuse information.
Data from: Genetic sex assignment in wild populations using GBS data: a statistical threshold approach
Open the record for dataset details and reuse information.
Data from: Analysis of microsatellite loci in tree of heaven (Ailanthus altissima (Mill.) Swingle) using SSR-GBS
Open the record for dataset details and reuse information.
Population structure, landscape genomics, and genetic signatures of adaptation to exotic disease pressure in Cornus florida L. – insights from GWAS and GBS data
Open the record for dataset details and reuse information.
Scripts for analyzing Paspalum vaginatum GBS data
<p>Seashore paspalum (Paspalum vaginatum Swartz) is a halophytic turfgrass and emerging genomic model system for the study of salt tolerance in cereals and other grasses. Despite recent interest and an increase in available tools, little is known about the diversity present in wild populations of P. vaginatum and its close relative P. distichum. Variation in ploidy, clonal propagation, hybridization, and subgenome composition appear to occur in the wild and may interact to influence geographic patterns of adaptation, particularly in response to environmental salinity levels. Using 218 accessions representing >170 wild collections from throughout the coastal southern United States plus existing USDA germplasm, we employed genotyping-by-sequencing, cpDNA sequencing and flow cytometry to identify genetic differentiation and ploidy variation. Within P. vaginatum, there are two morphologically distinct ecotypes: the fine-textured ecotype is diploid and appears to reproduce in the wild both sexually and by clonal propagation; in contrast, the coarse-textured ecotype consists largely of clonally-propagating triploid and diploid genotypes. The coarse-textured ecotype appears to be derived from hybridization between fine-textured P. vaginatum and an unidentified Paspalum species. These clonally propagating hybrid genotypes are more broadly distributed than clonal fine-textured genotypes and may represent a transition to a more generalist adaptive strategy. The triploid genotypes vary in whether they carry one or two copies of the P. vaginatum subgenome, indicating multiple evolutionary origins. This variation in subgenome composition shows associations with local ocean salinity levels across the sampled populations and may play a role in local adaptation.</p>
FIES AND THE GAIA FGK BENCHMARK STARS (GBS)
<p>Video of the talk at the NOT workshop 2022. </p>
Guillain Barré and Miller Fisher Syndromes (GBS) (MFS): Case Definition Pictorial Algorithm
<p>This post contains the Pictorial Algorithm for Guillain Barré and Miller Fisher Syndromes. They are included in the case definition companion guides, which contain resources and tools specific to events that have a published Brighton Collaboration case definition.</p>
GBS data of seven Brassica cultivars from Pakistan
<p>The genotyping-by-sequencing (GBS) data was generated on seven Brassica cultivars from Pakistan as a purpose of varietal registration. After strict quality-control, only 501 high-quality SNP markers were retained with 0% missing data. These marker sites can be used for varietal identification and diversity analysis.</p>
Friction over GBs
Open the record for dataset details and reuse information.
Data from: Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content
A comprehensive and meaningful phylogenetic hypothesis for the commercially important coffee genus (Coffea) has long been a key objective for coffee researchers. For molecular studies, progress has been limited by low levels of sequence divergence, leading to insufficient topological resolution and statistical support in phylogenetic trees, particularly for the major lineages and for the numerous species occurring in Madagascar. We report here the first almost fully resolved, broadly sampled phylogenetic hypothesis for coffee, the result of combining genotyping-by-sequencing (GBS) technology with a newly developed, lab-based workflow to integrate short read next-generation sequencing for low numbers of additional samples. Biogeographic patterns indicate either Africa or Asia (or possibly the Arabian Peninsula) as the most likely ancestral locality for the origin of the coffee genus, with independent radiations across Africa, Asia, and the Western Indian Ocean Islands (including Madagascar and Mauritius). The evolution of caffeine, an important trait for commerce and society, was evaluated in light of our phylogeny. High and consistent caffeine content is found only in species from the equatorial, fully humid environments of West and Central Africa, possibly as an adaptive response to increased levels of pest predation. Moderate caffeine production, however, evolved at least one additional time recently (between 2 and 4 Mya) in a Madagascan lineage, which suggests that either the biosynthetic pathway was already in place during the early evolutionary history of coffee, or that caffeine synthesis within the genus is subject to convergent evolution, as is also the case for caffeine synthesis in coffee versus tea and chocolate.
Transcervical Balloon Catheters in GBS Carriers, Is It Safe? A Randomized Controlled Trial
ClinicalTrials.gov study NCT03064672. IPD Sharing: NO. Countries: 0. Publications: 1.
Study to Assess a Booster Dose of GBS-NN/NN2 Vaccine
ClinicalTrials.gov study NCT05005247. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Study to Evaluate the Safety, Tolerability and Immunogenicity of Three Doses of GBS Vaccine in Elderly Participants
ClinicalTrials.gov study NCT05782179. IPD Sharing: NO. Countries: 1. Publications: 0.
Ultrasonography and Electrophysiology in GBS
ClinicalTrials.gov study NCT05284786. IPD Sharing: Not stated. Countries: 0. Publications: 14.
Validation of the GenePOC GBS Assay for the Detection of the Cfb Gene From Streptococcus Agalactiae Strains
ClinicalTrials.gov study NCT02718157. IPD Sharing: NO. Countries: 2. Publications: 0.
Effects of Oral Probiotic Supplementation on Group B Strep (GBS) Rectovaginal Colonization in Pregnancy
ClinicalTrials.gov study NCT01479478. IPD Sharing: NO. Countries: 1. Publications: 0.
GBS data of seven Brassica cultivars from Pakistan
Open the record for dataset details and reuse information.
Data from: Analysis of phylogenetic relationships and genome size evolution of the Amaranthus genus using GBS indicates the ancestors of an ancient crop
Open the record for dataset details and reuse information.
Data from: Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content
Open the record for dataset details and reuse information.
Scripts for analyzing Paspalum vaginatum GBS data
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.