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66 results for “Gymnopus”
Figure 1 from: Hughes KW, Morris SD, Reboredo-Segovia A (2015) Cloning of ribosomal ITS PCR products creates frequent, non-random chimeric sequences – a test involving heterozygotes between Gymnopus dichrous taxa I and II. MycoKeys 10: 45-56. https://doi.org/10.3897/mycokeys.10.5126
Figure 1 - The ITS2 region of two haplotypes of Gymnopus dichrous: Haplotypes DI (represented by TENN68084) and DII (represented by TENN68078). The TC pair at position 15 and the indel at position 25 were used to determine which the haplotype was represented by the 5' end of a cloned sequence. Bases in red are points where DI and DII haplotypes differ in sequence and were used to determine if template switching had occurred in a cloned PCR product. Eight base pairs at which template switching can be detected are indicated by numbers 1-8. The possible area in which template switching (ts) could have occurred is indicated by vertical arrows and the number of observed template switching events is given above the vertical arrow. Bases that may be involved in intra-strand base pairing as determined by MFOLD are outlined with black boxes. Ambiguity codes indicate intraspecific variation.
Figure 5 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 5 - Gymnopus confluens. Europe. Outlines of cheilocystidia, showing variation in sizes and complexity. Basidia furnished for size comparison. A TENN-F-59285 SZ B TENN-F-59469 FI C TENN-F-53546 SW D TENN-F-59219 FR E TENN-F-67882 GE F TENN-F-60109 RU. Standard bar = 20 μm.
Figure 10 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 10 - PhyML tree based on concatenated ribosomal ITS + LSU sequences. Bootstrap values based on 100 bootstrap replicates are at the left of the supported node. Analysis assumed the GTR model of evolution with the transition/transversion ratio, number of invariable sites and shape of the gamma distribution estimated. The log likelihood of the tree was -3135.8. Bold type = holotype of Gymnopus confluens subsp. campanulatus.
Figure 1 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 1 - Gymnopus confluens subsp. campanulate basidiomata, North America. A TENN-F-69073 (TFB14409) NB. Photo courtesy Roger Smith. Black box = 10 mm B TENN-F-59500 WA. Standard bar = 50 mm. Basidiomata in both images exhibit a tendency toward campanulate pileus margin.
Figure 8 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 8 - Gymnopus confluens subsp. campanulate. North American. Outlines of side branches of pileipellis hyphae, showing variation in size and complexity. A TENN-F-53522 NC B TENN-F-69133 NL C TENN-F-63806 VA. Standard bar = 20 μm.
Figure 7 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 7 - Gymnopus confluens. Europe. Outlines of side branches of pileipellis hyphae showing variation in size and complexity. A TENN-F-65131 BE B TENN-F-60109. RU C TENN-F-59469 FI D TENN-F-67865 GE. Standard bar = 20 μm.
Figure 9 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 9 - PhyML tree based on ribosomal ITS sequences. Bootstrap values based on 100 bootstrap replicates are at the left of the supported node. Analysis assumed the GTR model of evolution with the transition/transversion ratio, number of invariable sites and shape of the gamma distribution estimated. The log likelihood of the tree was -1776.7. Bold type = holotype of Gymnopus confluens subsp. campanulatus. Percent identity was based on the entire ITS1-5.8S-ITS2 sequence.
Figure 4 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 4 - Gymnopus confluens subsp. campanulate. North America. Outlines of basidiospores showing variation in sizes and shapes: A TENN-F-47030 NY B TENN-F-48376 TN C TENN-F-63806 VA D TENN-F-48376 TN E WTU-F-021394 AK F WTU-F-024005 AK. Standard bar = 5 μm.
Figure 2 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 2 - Gymnopus confluens basidiomata, Europe. A TENN-F-58239 (TFB10650) RU B TENN-F-59219 (TFB11335) FR. Standard bars = 50 mm.
Figure 6 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 6 - Gymnopus confluens subsp. campanulatus North America. Outlines of cheilocystidia, showing variation in sizes and complexity. Basidia furnished for size comparison. A MS4-009 NF B TENN-F-47030 NY C TENN-F-69053 NB D TENN-F-63806 VA E TENN-F-48376 TN F TENN-F-69074 NB.Standard bar = 20 µm.
Figure 3 from: Hughes KW, Petersen RH (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
Figure 3 - Gymnopus confluens Europe. Outlines of basidiospores showing variation in sizes and shapes. A TENN-F-59219 FR B TENN-F-67865 GE C TENN-F-65131 BE D TENN-F-59578 RU E TENN-F-53546 SW F TENN-F-59285 SZ. Standard bar = 5 μm.
Figure 4 from: César E, Bandala VM, Montoya L, Ramos A (2018) A new Gymnopus species with rhizomorphs and its record as nesting material by birds (Tyrannideae) in the subtropical cloud forest from eastern Mexico. MycoKeys 42: 21-34. https://doi.org/10.3897/mycokeys.42.28894
Figure 4 Gymnopusnidus-avis: a Hymenial trama elements b Thick- and thin-walled hyphae from stipe medullary tissue c Hyphae and terminal elements of pileipellis (holotype). Scale bars: 10 µm (a–c).
Figure 3 from: César E, Bandala VM, Montoya L, Ramos A (2018) A new Gymnopus species with rhizomorphs and its record as nesting material by birds (Tyrannideae) in the subtropical cloud forest from eastern Mexico. MycoKeys 42: 21-34. https://doi.org/10.3897/mycokeys.42.28894
Figure 3 Gymnopusnidus-avis: a Spores b Basidia c Cheilocystidia d Pileipellis (holotype). Scale bars: 5 µm (a); 10 µm (b–d).
Figure 1 from: César E, Bandala VM, Montoya L, Ramos A (2018) A new Gymnopus species with rhizomorphs and its record as nesting material by birds (Tyrannideae) in the subtropical cloud forest from eastern Mexico. MycoKeys 42: 21-34. https://doi.org/10.3897/mycokeys.42.28894
Figure 1 Phylogenetic relationships within Gymnopus species inferred from the ITS sequence dataset by maximum likelihood method (ML). Tree with the highest log likelihood (-3619.93). Initial tree(s) for the heuristic search were obtained automatically by applying Neighbour-Joining and BioNJ algorithms to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach and then selecting the topology with superior log likelihood value. The bootstrap values and Bayesian posterior probabilities (obtained after Bayesian inference) are indicated on the tree branches (BS/BPP). Sequences obtained in this study are in bold.
Gymnopus androsaceus growth on pine needles
GEO Series GSE139333. Gymnopus androsaceus. 9 samples. Type: Expression profiling by high throughput sequencing.
Figure 3 from: Petersen RH, Hughes KW (2019) Two additional species of Gymnopus (Euagarics, Basidiomycotina). MycoKeys 45: 1-24. https://doi.org/10.3897/mycokeys.45.29350
Figure 3 Gymnopusneobrevipes. Habit view. TFB 14489 (TENN-F-069182). Scale bar: 10 mm.
Figure 15 from: Petersen RH, Hughes KW (2019) Two additional species of Gymnopus (Euagarics, Basidiomycotina). MycoKeys 45: 1-24. https://doi.org/10.3897/mycokeys.45.29350
Figure 15 Gymnopusportoricensis. Cheilocystidia. Scale bar: 20 µm. TFB 4548 (TENN-F-051029).
Figure 7 from: Cooper J, Leonard P (2013) Three new species of foetid Gymnopus in New Zealand. MycoKeys 7: 31-44. https://doi.org/10.3897/mycokeys.7.4710
Figure 7 - Gymnopus hakaroa Holotype PDD 87315. Fruitbodies, showing waxy substratum.
Figure 5 from: Cooper J, Leonard P (2013) Three new species of foetid Gymnopus in New Zealand. MycoKeys 7: 31-44. https://doi.org/10.3897/mycokeys.7.4710
Figure 5 - Gymnopus imbricatus Holotype PDD 95489. Spores (in KOH).
Figure 8 from: Cooper J, Leonard P (2013) Three new species of foetid Gymnopus in New Zealand. MycoKeys 7: 31-44. https://doi.org/10.3897/mycokeys.7.4710
Figure 8 - Gymnopus hakaroa Holotype PDD 87315. Spores (KOH).
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OpenNeuro
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