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1,026 results for “Linked data”
MS data linked to the manuscript : DOI: 10.3390/pharmaceutics14030616
<p>Data set containing Extract_E_Chevalieri_EtOAc_DCM .raw file of the LC-MS/MS acquisition.</p>
MS data linked to the manuscript : DOI: 10.3390/pharmaceutics14030616
<p>Data set containing Extract_E_Chevalieri_EtOAc_DCM .raw file of the LC-MS/MS acquisition.</p> <p> </p>
Supplementary data for "Accelerated river mobility linked to water discharge variability"
<p>Supplementary data for the paper "Accelerated river mobility linked to water discharge variability", by Leenman et al.</p> <p>This repository contains 3 datasets underlying the figures in the manuscript and supporting material.</p> <p><strong>ds01_flow_gauge_metadata: </strong>Details and locations of flow records used in our analysis.</p> <p><strong>ds02_Qvar_and_TR: </strong>Floodplain reworking timescales, channel characteristics, sediment concentrations, and discharge variability metrics (i.e. all metrics used in our figures and modeling). Floodplain reworking timescale data are from <a href="https://doi.org/10.1029/2024GL108537">Greenberg et al., 2024</a>. Channel slopes, widths, planforms and catchment areas are from <a href="https://doi.org/10.1130/G49121.1">Galeazzi et al., 2021.</a> Bed-material sediment concentration estimates are generated from WBMsed (<a href="https://doi.org/10.1029/2021WR031583">Cohen et al., 2022)</a>. </p> <p><strong>ds03_channel_threads_GRWL: </strong>Data used to make one of our supplemental figures. Frequency count of the number of reaches that have a given number of channel threads in the Global River Widths from Landsat (GRWL) database (<a href="https://doi.org/10.1126/science.aat0636">Allen and Pavelsky, 2018</a>). Data downloaded via Google Earth Engine. Only reaches wider than 1000 m are included.</p> <p><strong>Code</strong> using these data to generate the plots in the paper / SM using these data can be found at <a href="https://github.com/a-leenman/Discharge-variability-river-mobility">https://github.com/a-leenman/Discharge-variability-river-mobility</a>. This is the 'live' code; the version at the time of paper submission is archived here: <a href="https://doi.org/10.5281/zenodo.12555069">https://doi.org/10.5281/zenodo.12555069</a>.</p>
Linked collectors and determiners for: Improving Species-Based Area Protection in Antarctica - data.
Natural history specimen data linked to collectors and determiners held within, "Improving Species-Based Area Protection in Antarctica - data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/d61860b3-22fd-4c8f-a089-97a2d6893f8b">https://bionomia.net/dataset/d61860b3-22fd-4c8f-a089-97a2d6893f8b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d61860b3-22fd-4c8f-a089-97a2d6893f8b">https://gbif.org/dataset/d61860b3-22fd-4c8f-a089-97a2d6893f8b</a>. Formatted as a Frictionless Data package.
20 GB in 10 minutes: Data linking across major biodiversity databases: Data supplements
<p>This supplementary data publication contains:</p> <p><strong>links-globi-wd-ott.tsv.gz:</strong> aggregate list of taxon graphs from Open Tree of Life Taxonomy (OTT), GloBI and Wikidata. This tab separated two column table, describe the taxonomic identifiers (e.g., NCBI:9606) that map into OTT, GloBI and Wikidata. For instance, the line "NCBI:9689{tab}WD:Q140" indicates that wikidata links their lion (<em>Panthera leo</em>, https://www.wikidata.org/wiki/Q140) to NCBI's lion (<em>Panthera leo</em>, https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9689).</p> <p><strong>wikidata-taxon-info20171227.tsv.gz: </strong>a terse 5 column file in tab-separated format of taxon objects extracted from WikiData. (2018). Wikidata dump 2017-12-27 [Data set]. Zenodo. http://doi.org/10.5281/zenodo.1211767 . The columns contain the following:</p> <ol> <li>wikidata taxon item id (e.g., Q140 or https://www.wikidata.org/wiki/Q140)</li> <li>scientific name of taxon item id (e.g., Panthera leo, Mammalia)</li> <li>rank id of the taxon item id (e.g., Q7432 species or https://www.wikidata.org/wiki/Q7432). To retrieve a full list of wikidata taxon rank ids and their common names, you can use sparql to query wikidata (e.g., <a href="https://github.com/globalbioticinteractions/nomer/blob/c3a1f5a2ebfb87ffc67e3bace19b82d96c0d25e8/nomer/src/main/java/org/globalbioticinteractions/nomer/util/WikidataTaxonRankLoader.java">Nomer's WikidataTaxonRankLoader</a> ). </li> <li>parent ids if taxon item id using pipes "|" as separators if there's multiple parents. Please note that some taxon items have multiple parents (e.g., https://www.wikidata.org/wiki/Q774014).</li> <li>external taxonomic identifiers that taxon item link to (e.g. "ITIS:162532|EOL:8266|GBIF:2960|WORMS:125440") . If muliple are present, pipes "|" are used to separate the links. Only a selection of taxonomic schemes was used, namely: NCBI, GBIF, ITIS, WORMS, FISHBASE, IF (index fungorum) and EOL.</li> </ol> <p>The datasets can be recreated by scripts in https://github.com/bio-guoda/guoda-datasets/tree/master/wikidata or <a href="https://doi.org/10.5281/zenodo.1428949">https://doi.org/10.5281/zenodo.1428949</a> .</p>
Data: Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses
<p>Dataset of raw SMRT sequence data and processed data including alignments of virus sequences edited using CRISPR-Cas9 technology in cassava plants.</p> <p> </p>
LITMUS Linked Data Pilot - TG4 Gradam Ceoil Dataset
<p>LITMUS (Linked Irish Traditional Music) project linked data pilot dataset in Turtle.</p> <p>Data contains performers, instruments, years, tunes, tune sets, tune types, Thesession.org IDs, Port.itma.ie IDs, MusicBrainz performer IDs, and ITMA Collection (Port) IDs for 1998-2018 performances from the TG4 Gradam Ceoil broadcasts.</p> <p>This data was then aligned with the LITMUS ontology and thesauri and published as linked data at: itma.ie/litmus/search</p>
Wikidata's linked data for cultural heritage digital resources: an evaluation based on the Europeana Data Model
<p>Wikidata is an open data source with many potential applications. Our study aims to evaluate the usability of Wikidata as a linked data source for acquiring richer descriptions of digital objects within the context of Europeana, a data aggregator from the cultural heritage domain. Specifically, we aim to crawl and convert Wikidata using the standard approaches and operations developed for the (Semantic) Web of Data, i.e. using technologies like linked data consumption and RDF(S)/OWL ontology expression and reasoning. We also seek to re-use existing “semantic” specifications, such as conversions to and from generic data models like Schema.org and SKOS. We have developed an experimental set-up and accompanying software to test the feasibility of this approach. We conclude that Wikidata’s linked data is able to express an interesting level of semantics for cultural heritage, but quality can still be improved and a human operator still must assist linked data applications to interpret Wikidata’s RDF.</p>
Zenodo data and software citation links captured by the Asclepias Broker
<p>The dataset was retrieved from the Asclepias Broker early January 2019 after having performed a full harvesting and deduplication cycle from a clean database with zero citation links.</p> <p>The dataset contains citation links from three discovery systems: the NASA Astrophysics Datasystem (ADS), Crossref Event Data and Europe PMC. Only citation links with a target DOI in the DOI prefix 10.5281 (Zenodo’s DOI prefix) were kept.</p>
The data for Radar Circular Polarization Ratio of Near-Earth Asteroids: Links to Spectral Taxonomy and Surface Processes
<p>README</p> <p>% =========================================================================<br>% Project: "Radar Circular Polarization Ratio of Near-Earth Asteroids: Links to <br>% Spectral Taxonomy and Surface Processes"<br>% Author: Edgard G. Rivera-Valentín<br>% Institution: Johns Hopkins University Applied Physics Laboratory<br>% Email: edgard.rivera-valentin@jhuapl.edu<br>% ORCID: 0000-0002-0786-7307<br>% Date: 18 September 2024<br>% =========================================================================</p> <p>% =========================================================================<br>% Licenses:<br>% Any software provided in this repository is licenced under the MIT License, detailed below and within <br>% this archive. <br>% Any data provided in this repository is licenced under Creative Commons Attribution 4.0 International, <br>% detailed within this archive. <br>%<br>% MIT License<br>%<br>% Copyright (c) 2024 The Johns Hopkins University Applied Physics Laboratory LLC<br>%<br>% Permission is hereby granted, free of charge, to any person obtaining a copy<br>% of this software, data, and associated documentation files (the "Software"), to deal<br>% in the Software without restriction, including without limitation the rights<br>% to use, copy, modify, merge, publish, distribute, sublicense, and/or sell<br>% copies of the Software, and to permit persons to whom the Software is<br>% furnished to do so, subject to the following conditions:<br>%<br>% The above copyright notice and this permission notice shall be included in<br>% all copies or substantial portions of the Software.<br>%<br>% THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR<br>% IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,<br>% FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE<br>% AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER<br>% LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,<br>% OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN<br>% THE SOFTWARE.<br>%<br>% ADDITIONAL LICENSING INFORMATION:<br>% Any reuse of the figures and data provided in this repository must abide by <br>% the Copyright policy of the American Astronomical Society Journals:<br>% https://journals.aas.org/article-charges-and-copyright/#AAS_material<br>% =========================================================================</p> <p>% =========================================================================<br>% Description:<br>% This is a data repository for the manuscript published in the Planetary<br>% Science Journal:<br>% Title = Radar Circular Polarization Ratio of Near-Earth Asteroids: Links <br>% to Spectral Taxonomy and Surface Processes<br>% Please see the Zenodo metadata for detailed publicatoin information.<br>% This repository includes:<br>% (1) A csv file that has the table of data used in the published work. The<br>% table includes the data for each near-Earth asteroid used in the<br>% anlaysis. The header information includes: Asteroid Number, Designation<br>% or Name, Taxonomic Type (Following the Bus-DeMeo classification system),<br>% CPR (where CPR is circular polarization ratio), CPR uncertainty (where<br>% the uncertainty is the 1-sigma value), a (where a is semi-major axis in<br>% au), q (where q is the perihelion distance in au), Q (where Q is the<br>% aphelion distance in au), P (where P is the rotational period in hours),<br>% Hmag (where Hmag is the absolute magnitude), and Orbital Class. <br>% (2) A .mrt file that contains the same data as the csv file, but formatted<br>% according to the specifications of the machine-readable table format<br>% used by the AAS Journals. The .mrt version will also be published with<br>% the final PSJ article.<br>% (3) .mat files containing the output from the statistical modeling<br>% presented in the paper. These files are required to run the .m file<br>% included in this repository.<br>% (4) Make Figures.m, which is a Matlab code that remakes all the figures<br>% presented in the paper given the data in each of the .mat files. <br>% (5) The .png files for each of the figures presented in the paper. <br>% =========================================================================</p> <p>% =========================================================================<br>% File Formats:<br>% This archive includes various file formats. <br>% .csv file is a text file format that uses commas to separate values, and<br>% newlines to separate records. <br>% .mrt file is an ASCII byte-by-byte format that is documented here:<br>% https://journals.aas.org/mrt-overview/<br>% and readable by tools such as astropy, TOPCACT, etc. <br>% .m file is a simple text file used by Matlab, it can be opened by any<br>% text editor and executed by Matlab. <br>% .mat file is the file format used by MATLAB for saving data. It can be<br>% ready by other software, such as python, e.g., <br>% https://docs.scipy.org/doc/scipy/reference/generated/scipy.io.loadmat.html<br>% .png file is short for Portable Network Graphic, which is a type of<br>% raster image file. <br>% =========================================================================</p>
Linked collectors and determiners for: Northern Territory Herbarium (DNA) AVH data.
Natural history specimen data linked to collectors and determiners held within, "Northern Territory Herbarium (DNA) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/270c3da6-45ad-4272-804b-33ac7ee33421">https://bionomia.net/dataset/270c3da6-45ad-4272-804b-33ac7ee33421</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/270c3da6-45ad-4272-804b-33ac7ee33421">https://gbif.org/dataset/270c3da6-45ad-4272-804b-33ac7ee33421</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Western Australian Herbarium (PERTH) AVH data.
Natural history specimen data linked to collectors and determiners held within, "Western Australian Herbarium (PERTH) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/5a3b50fa-c882-4129-9405-38e54c0a73f3">https://bionomia.net/dataset/5a3b50fa-c882-4129-9405-38e54c0a73f3</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/5a3b50fa-c882-4129-9405-38e54c0a73f3">https://gbif.org/dataset/5a3b50fa-c882-4129-9405-38e54c0a73f3</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: James Cook University Herbarium (JCT) AVH data.
Natural history specimen data linked to collectors and determiners held within, "James Cook University Herbarium (JCT) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/01bc220b-39b8-4837-b235-f921187af771">https://bionomia.net/dataset/01bc220b-39b8-4837-b235-f921187af771</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/01bc220b-39b8-4837-b235-f921187af771">https://gbif.org/dataset/01bc220b-39b8-4837-b235-f921187af771</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Centre for Australian National Biodiversity Research (CANB) AVH data.
Natural history specimen data linked to collectors and determiners held within, "Centre for Australian National Biodiversity Research (CANB) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/15738fee-78b1-4751-bcc1-cbf7139c68de">https://bionomia.net/dataset/15738fee-78b1-4751-bcc1-cbf7139c68de</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/15738fee-78b1-4751-bcc1-cbf7139c68de">https://gbif.org/dataset/15738fee-78b1-4751-bcc1-cbf7139c68de</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: New South Wales Plant Pathology and Mycology Herbarium (DAR) AVH data.
Natural history specimen data linked to collectors and determiners held within, "New South Wales Plant Pathology and Mycology Herbarium (DAR) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/685cff6d-e439-4552-980c-5c73d647d1bf">https://bionomia.net/dataset/685cff6d-e439-4552-980c-5c73d647d1bf</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/685cff6d-e439-4552-980c-5c73d647d1bf">https://gbif.org/dataset/685cff6d-e439-4552-980c-5c73d647d1bf</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Australian Tropical Herbarium (CNS) AVH data.
Natural history specimen data linked to collectors and determiners held within, "Australian Tropical Herbarium (CNS) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/2651f9da-9999-4cd2-9f17-293a977ffe58">https://bionomia.net/dataset/2651f9da-9999-4cd2-9f17-293a977ffe58</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/2651f9da-9999-4cd2-9f17-293a977ffe58">https://gbif.org/dataset/2651f9da-9999-4cd2-9f17-293a977ffe58</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Aspilanta new genus (Heliozelidae) specimen data.
Natural history specimen data linked to collectors and determiners held within, "Aspilanta new genus (Heliozelidae) specimen data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/db2db3cd-5473-43be-b57a-95eff336f09c">https://bionomia.net/dataset/db2db3cd-5473-43be-b57a-95eff336f09c</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/db2db3cd-5473-43be-b57a-95eff336f09c">https://gbif.org/dataset/db2db3cd-5473-43be-b57a-95eff336f09c</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: ERBG AVH data.
Natural history specimen data linked to collectors and determiners held within, "ERBG AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/bfbac936-6715-4f50-9b18-175bffb85025">https://bionomia.net/dataset/bfbac936-6715-4f50-9b18-175bffb85025</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/bfbac936-6715-4f50-9b18-175bffb85025">https://gbif.org/dataset/bfbac936-6715-4f50-9b18-175bffb85025</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: The University of Melbourne Herbarium (MELU) AVH data.
Natural history specimen data linked to collectors and determiners held within, "The University of Melbourne Herbarium (MELU) AVH data". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/8642acf1-68f2-42b2-8ce3-97798e383cb2">https://bionomia.net/dataset/8642acf1-68f2-42b2-8ce3-97798e383cb2</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/8642acf1-68f2-42b2-8ce3-97798e383cb2">https://gbif.org/dataset/8642acf1-68f2-42b2-8ce3-97798e383cb2</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Flora Sumatra: Digitizing and data basing specimens of the Sumatran Flora deposited at Herbarium Universitas Andalas (ANDA)-Part 2.
Natural history specimen data linked to collectors and determiners held within, "Flora Sumatra: Digitizing and data basing specimens of the Sumatran Flora deposited at Herbarium Universitas Andalas (ANDA)-Part 2". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/39e85504-1ebe-4671-be65-19ccdc1d7c7d">https://bionomia.net/dataset/39e85504-1ebe-4671-be65-19ccdc1d7c7d</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/39e85504-1ebe-4671-be65-19ccdc1d7c7d">https://gbif.org/dataset/39e85504-1ebe-4671-be65-19ccdc1d7c7d</a>. Formatted as a Frictionless Data package.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.