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167 results for “Metagenomic DNA”
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Supplementary material 1 from: Nugent CM, Adamowicz SJ (2020) Alignment-free classification of COI DNA barcode data with the Python package Alfie. Metabarcoding and Metagenomics 4: e55815. https://doi.org/10.3897/mbmg.4.55815
File S1 – Training, test, and validation data sets used in model training and analysis
opencc-zeroSep 2020View details →
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Supplementary material 1 from: Di Muri C, Lawson Handley L, Bean CW, Li J, Peirson G, Sellers GS, Walsh K, Watson HV, Winfield IJ, Hänfling B (2020) Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds. Metabarcoding and Metagenomics 4: e56959. https://doi.org/10.3897/mbmg.4.56959
Table S1 and Figure S1
opencc-zeroOct 2020View details →
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Supplementary material 2 from: Di Muri C, Lawson Handley L, Bean CW, Li J, Peirson G, Sellers GS, Walsh K, Watson HV, Winfield IJ, Hänfling B (2020) Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds. Metabarcoding and Metagenomics 4: e56959. https://doi.org/10.3897/mbmg.4.56959
Table S2. Fish taxonomic assignment metaBEAT
opencc-zeroOct 2020View details →
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Supplementary material 3 from: Di Muri C, Lawson Handley L, Bean CW, Li J, Peirson G, Sellers GS, Walsh K, Watson HV, Winfield IJ, Hänfling B (2020) Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds. Metabarcoding and Metagenomics 4: e56959. https://doi.org/10.3897/mbmg.4.56959
Table S3. Unassigned blast 1.0
opencc-zeroOct 2020View details →
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Supplementary material 1 from: Clasen LA, Detheridge AP, Scullion J, Griffith GW (2020) Soil stabilisation for DNA metabarcoding of plants and fungi. Implications for sampling at remote locations or via third-parties. Metabarcoding and Metagenomics 4: e58365. https://doi.org/10.3897/mbmg.4.58365
Combined Supplemntary Data Files 1–8
opencc-zeroDec 2020View details →
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Supplementary material 9 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S3
opencc-zeroDec 2020View details →
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Supplementary material 10 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S4
opencc-zeroDec 2020View details →
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Supplementary material 11 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S5
opencc-zeroDec 2020View details →
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Supplementary material 8 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S2
opencc-zeroDec 2020View details →
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Supplementary material 12 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S6
opencc-zeroDec 2020View details →
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Supplementary material 7 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Figure S1
opencc-zeroDec 2020View details →
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Supplementary material 3 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Appendix 3: Predator assignment
opencc-zeroDec 2020View details →
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Supplementary material 6 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Table S1
opencc-zeroDec 2020View details →
zenodo28/100
Supplementary material 1 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Appendix 1: Fish inventory
opencc-zeroDec 2020View details →
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Supplementary material 2 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Appendix 2: Methods
opencc-zeroDec 2020View details →
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Supplementary material 4 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Appendix 4: Samples from non-focal mammal predators
opencc-zeroDec 2020View details →
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Supplementary material 5 from: Harper L, Watson H, Donnelly R, Hampshire R, Sayer C, Breithaupt T, Hänfling B (2020) Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: e56087. https://doi.org/10.3897/mbmg.4.56087
Appendix 5: Non-focal mammal diet
opencc-zeroDec 2020View details →
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Supplementary material 2 from: Basset Y, Donoso DA, Hajibabaei M, Wright MTG, Perez KHJ, Lamarre GPA, De León LF, Palacios-Vargas JG, Castaño-Meneses G, Rivera M, Perez F, Bobadilla R, Lopez Y, Ramirez JA, Barrios H (2020) Methodological considerations for monitoring soil/litter arthropods in tropical rainforests using DNA metabarcoding, with a special emphasis on ants, springtails and termites. Metabarcoding and Metagenomics 4: e58572. https://doi.org/10.3897/mbmg.4.58572
Appendix S2
opencc-zeroJan 2021View details →
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Supplementary material 4 from: Sickel W, Zizka V, Scherges A, Bourlat SJ, Dieker P (2023) Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: e112290. https://doi.org/10.3897/mbmg.7.112290
Evaluation of methodological approaches
opencc-zeroNov 2023View details →
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Supplementary material 2 from: Sickel W, Zizka V, Scherges A, Bourlat SJ, Dieker P (2023) Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: e112290. https://doi.org/10.3897/mbmg.7.112290
Literature collection
opencc-zeroNov 2023View details →
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record