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763 results for “Mitochondrial DNA”
FIGURE 5 in A subspecies of marbled newt (Triturus marmoratus) in the Iberian Peninsula newly resolved from congruent nuclear and mitochondrial DNA data
FIGURE 5 The Iberian Peninsula with the ranges of Triturus pygmaeus in light red and T. rudolfi in brown (Arntzen, 2023, 2024). Populations of the counterpart species T. marmoratus are coloured according to the dominant mitochondrial haplogroups with colours as in the legend and fig. 4. The solid or interrupted black line shows the northern range of T. m. harmannis ssp. nov., as determined by the green, yellow and blue sections in fig. 1. Note that haplogroups 1 and 2 are associated with T. m. marmoratus and that haplogroups 3, 4 and 5 are associated with T. m. harmannis ssp. nov. Haplogroup 6 is associated with T. pygmaeus and T. rudolfi (for details see table 2). Areas shown in white fall outside the documented range of the T. marmoratus species group and areas shown in grey are distant from a sampled locality.
FIGURE A1 in A subspecies of marbled newt (Triturus marmoratus) in the Iberian Peninsula newly resolved from congruent nuclear and mitochondrial DNA data
FIGURE A1 Holotype of Triturus marmoratus harmannis ssp. nov. at right and ventral view. Size bar is 1 cm. Stored at the Museo Nacional de Ciencias Naturales, Madrid, Spain under catalogue number 51792.
FIGURE 3 in A subspecies of marbled newt (Triturus marmoratus) in the Iberian Peninsula newly resolved from congruent nuclear and mitochondrial DNA data
FIGURE 3 Histogram of scores along the first axis for the discriminant analysis of size corrected morphometric data for Triturus marmoratus marmoratus (shaded bars) and T. m. harmannis ssp. nov. (open bars). This first discriminant axis is most strongly correlated with extremity lengths and not the other characters. Highest loadings on the second axis are for head length and head width (results not shown).
FIGURE 1 in A subspecies of marbled newt (Triturus marmoratus) in the Iberian Peninsula newly resolved from congruent nuclear and mitochondrial DNA data
FIGURE 1 Classification and geographical distribution of European marbled and pygmy newts from a panel of 32–33 nuclear genetic markers (data from Kazilas et al., 2024). (A) HIests plot with ancestry and heterozygosity for within marbled newts (top panel, with Triturus m. marmoratus left and T. m. harmannis ssp. nov. to the right) and for pygmy newts (bottom panel, with T. rudolfi to the left and T. pygmaeus to the right). (B) Investigated Iberian populations shown by black dots with surrounding areas coloured as in A. Areas shown in white fall outside the documented range of the T. marmoratus species group and areas in shown grey are distant from a sampled locality. The open square symbol in the Lisbon Peninsula corresponds to the open round symbol in A.
Figures 4–5. Mitochondrial D-loop 474 in Molecular confirmation of the occurrence of Anguilla interioris (Actinopterygii: Anguilliformes) in North Maluku of Indonesia and mitochondrial DNA haplotype diversity among existing specimens
Figures 4–5. Mitochondrial D-loop 474 bp sequence analyses. (4) Phylogenetic analysis based on maximum likelihood algorithm with the sample codes, GenBank accession numbers and sample sites shown. Bootstrap percentages are shown at the tree nodes. (5) Haplotype network with the haplotypes labelled as H1 to H9. The circle size is proportional to the number of samples, and different sample sites are represented by different colours. Small white circle represents median vector which is the hypothesized or missing haplotype. Each dash on the line symbolizes one mutational step.
Figure 1 in Molecular confirmation of the occurrence of Anguilla interioris (Actinopterygii: Anguilliformes) in North Maluku of Indonesia and mitochondrial DNA haplotype diversity among existing specimens
Figure 1. Sampling locations of Anguilla interioris in North Maluku of East Indonesia. Sampling locations are shown in red (circle: COI, triangle: D-loop). Locations of Bougainville of Papua New Guinea, Papua New Guinea mainland, Negros Oriental and Sibutad of Philippines, and Ambon and Bengkulu of Indonesia, which were used in molecular phylogenetic and haplotype network analyses, are shown in purple (circle: COI, triangle: D-loop). Specimen records are shown in square with growth stages; L [larval (leptocephalus); Kuroki et al. 2006, Wouthuyzen et al. 2009, Aoyama et al. 2018], J [juvenile (glass eel); Sugeha et al. 2008, Fahmi et al. 2012, Wibowo et al. 2021] and A (adult; Watanabe et al. 2004, Fahmi et al. 2012, Wibowo et al. 2021, this study). Base maps were downloaded from http://viewer. nationalmap.gov/viewer (USGS 2022) and from the OpenStreetMap at https://www.openstreetmap.org.
Text-fig. 4. Electrophoresis after amplification: Electrophoretical analysis of mitochondrial DNA. mtDNA sequences were amplified by primers F15.412 and R16.169 (450 bp), R16.269 (550 bp), R16.519 (800 bp). Lane 1 are primers F15.412 + R16.169, lane 2 primers F15.412 + R16.269, lane 3 primers F15.412 + R16.519, NC – negative control – water, L – 100 bp DNA ladder (band size from 100 bp to 1500 bp). in Genetic Analysis Of Possibly The Oldest Greyhound Remains Within The Territory Of The Czech Republic As Proof Of A Local Elite Presence At Chotěbuz-Podobora Hillfort In The 8 -9 Century Ad
Text-fig. 4. Electrophoresis after amplification: Electrophoretical analysis of mitochondrial DNA. mtDNA sequences were amplified by primers F15.412 and R16.169 (450 bp), R16.269 (550 bp), R16.519 (800 bp). Lane 1 are primers F15.412 + R16.169, lane 2 primers F15.412 + R16.269, lane 3 primers F15.412 + R16.519, NC – negative control – water, L – 100 bp DNA ladder (band size from 100 bp to 1500 bp).
Figure 7 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 7. Median-joining network of 68 haplotypes from 485 wild boars from different regions of the world. Circle sizes are proportional to haplotype frequencies and numbers refer to haplotype codes in Table 2. Numbers on the branches indicate the number of nucleotide substitutions, if more than one. Major haplogroups are delimited by dashed lines. A, Asian; NE, Near Eastern; E1, European E1; E2, European E2. Haplotypes exclusive to Turkey are labeled in green.
Figure 3 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 3. Maximum likelihood phylogenetic tree of haplotypes of the Turkish wild boars (Sus scrofa) obtained in the present study, based on the partial D-loop sequences of mtDNA. Numbers above or below branches indicate bootstrap values. TR numbers refer to current haplotype numbers in Table 1 and H numbers refer to the published haplotype labels downloaded from GenBank (Table 2). E1: European 1 haplogroup/clade in Figure 5, NE: Near East haplogroup/ clade in Figure 5.
Figure 2 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 2. Various phenotypes of obtained Turkish wild boar individuals from different localities studied presently.
Figure 6 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 6. Bayesian inference tree based on 68 partial D-loop haplotypes of 485 wild boars (both obtained in this study and downloaded from GenBank). Posterior probabilities are indicated at nodes. Haplogroups: A, Asian; NE, Near Eastern; E1, European E1; E2, European E2. Outgroup taxa are Sus barbatus and Phacochoerus aethiopicus.
Figure 1 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 1. Location map of the 70 samples examined in this study: black dots indicate local samples of one or more individuals and numbers refer to locality names in Table 1. TT (Turkish Thrace, 1–4), SWA (Southwestern Anatolia, 5–11), CA (Central Anatolia, 12–26), NEA (Northeastern Anatolia, 27–30), and SEA (Southeastern Anatolia, 31–34).
Figure 5 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 5. Maximum likelihood tree based on 68 haplotypes from 485 wild boar D-loop region sequences (both obtained in this study and downloaded from GenBank). Numbers above or below branches indicate bootstrap support values. Haplogroups: A, Asian; NE, Near Eastern; E1, European E1; E2, European E2. Outgroup taxa are Sus barbatus and Phacochoerus aethiopicus.
Figure 4 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 4. Bayesian phylogenetic tree constructed from haplotypes of the wild boar (Sus scrofa) samples collected in this study, based on the partial D-loop sequences of mtDNA. Posterior probabilities are indicated at nodes. TR numbers refer to current haplotype numbers in Table 1 and H numbers refer to the published haplotype labels downloaded from GenBank (Table 2). E1: European 1 haplogroup/clade in Figure 5, NE: Near East haplogroup/clade in Figure 5.
Figure 2 in High genetic distinctiveness of wild and farm fox (Vulpes vulpes L.) populations in Poland: evidence from mitochondrial DNA analysis
Figure 2. Neighbor-joining haplotype network based on frequencies showing relationships between concatenated MT-CO1 and MTATP6 sequences of fur farm and wild red foxes.
Figure 1 in High genetic distinctiveness of wild and farm fox (Vulpes vulpes L.) populations in Poland: evidence from mitochondrial DNA analysis
Figure 1. Distribution of sampling sites of wild and fur-farm red foxes in Poland: light gray areas represent the provinces from which samples of wild foxes were taken; the darker gray area indicated with a black circle shows the location of investigated fox farms; the numbers represent fox fur-farms in particular voivodeships.
Fig. 5. Phylogenetic tree depicting inferred genetic relationships among Leucocytozoon mitochondrial DNA cytochrome b in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Fig. 5. Phylogenetic tree depicting inferred genetic relationships among Leucocytozoon mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the Yukon-Kuskokwim Delta, Alaska during 2006–2016 and those previously reported for closely related haemosporidian morphospecies on the National Center for Biotechnology Information GenBank and Malavi databases (accession IDs in parentheses). Bars to the right of tree represent the assignment of sequences to L. simondi clade A (teal), L. simondi clade B (orange), or other Leucocytozoon. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4. Phylogenetic tree depicting inferred genetic relationships among Haemoproteus mitochondrial DNA cytochrome b in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Fig. 4. Phylogenetic tree depicting inferred genetic relationships among Haemoproteus mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the Yukon-Kuskokwim Delta, Alaska during 2006–2016 and those previously reported for closely related haemosporidian morphospecies on the National Center for Biotechnology Information GenBank and Malavi databases (accession IDs in parentheses).
Fig. 2. Minimum spanning network for haemosporidian mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the YukonKuskokwim Delta, Alaska during 2006–2016 in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Fig. 2. Minimum spanning network for haemosporidian mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the YukonKuskokwim Delta, Alaska during 2006–2016. Circles are drawn proportional to the frequency at which haplotypes were detected. Shading represented the assignment of representative sequences for haplotypes to L. simondi clade A (teal), L. simondi clade B (orange), or other Leucocytozoon (grey) in phylogenetic analyses (see Results and Fig. 5). Lines are drawn proportional to genetic distance and are labeled per the number of mutations represented (except single nucleotide polymorphisms which are unlabeled). (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Datasets: Population genomics and mitochondrial DNA reveal cryptic diversity in North American Spring Cavefishes (Amblyopsidae, Forbesichthys)
<p>Forbesichthys_allsites.vcf: Dataset in VCF format used to perform Effective Population Size estimation.</p> <p>Forbesichthys_SNPs_NoLD.vcf: Dataset in VCF format used to perform PCA, fastStrucuture, and phylogenetic analyses.</p> <p>Files with extension .sfs contain site spectrum frequencies generated with the program easySFS.py.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
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