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133 results for “Molecular phylogenetic analyses”
FIGURE 3 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
FIGURE 3. Majority-rule (50%) consensus tree of Knudsen et al. (2007, after fig. 3), derived from a Bayesian analysis of three combined datasets composed of mitochondrial DNA (16S and cytochrome b) and morphological data for 24 liparid species. Tree is rooted with species of the Cyclopteridae. Posterior probabilities are above branches.
FIGURE 5 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
FIGURE 5. Consensus phylogenetic tree of Duhamel et al. (2010, after fig. 3), derived from Bayesian and maximum parsimony analyses of a 668 bp alignment of cytochrome c oxidase subunit 1 gene (COI) sequences for 157 samples of 46 liparid species. Bayesian posterior probabilities are above branches that lead to multiple species. Tree is rooted with species of the Cyclopteridae and Zoarcidae. Corrected identifications based on our study are in parentheses.
FIGURE 8 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
FIGURE 8. Phylogeny of the Liparidae. Majority rule (50%) consensus tree from the Bayesian inference of a 490 bp alignment of 270 cytochrome c oxidase subunit one gene (COI) sequences. Nodal values represent Bayesian posterior probabilities and bootstrap values from the maximum likelihood analysis (above and below, respectively). Species names are followed by a catalog number or BOLD "Sequence ID" number when represented by a sequence from a single specimen in our dataset. N indicates number of sequences, when multiple sequences support a branch tip. Only unique sequences were subjected to the analyses (Appendix Table 1); other identical sequences surveyed are listed in Appendix Table 2. Clades Liparis, Aenigmoliparia, and Paraliparia are depicted in Figures 9, 10, and 11, respectively.
FIGURE 13 H–O in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
FIGURE 13 H–O. Pectoral girdles of selected species of the Cyclopteridae and Liparidae: H) Prognatholiparis ptychomandibularis, UW 156749; I) Acantholiparis opercularis, UW 118624; J) Careproctus sp. cf. melanurus, UW 119240; K) Paraliparis dactylosus, UW 116232; L) Rhinoliparis attenuatus, UW 113736; M) P. cephalus, UW 117527; N) Paraliparis pectoralis, UW 117515; O) P. ulochir, UW 150802.
FIGURE 13 A–G in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
FIGURE 13 A–G. Pectoral girdles of selected species of the Cyclopteridae and Liparidae: A) Eumicrotremus orbis, UW 111284; B) Nectoliparis pelagicus, UW 119455; C) Liparis gibbus, UW 119092; D) Crystallichthys cyclospilus, UW 47840; E) Careproctus macrodiscus, FAKU 137835; F) Careproctus marginatus, FAKU 144616; G) Careproctus roseofuscus, FAKU 144615
FIGURE 11 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters
FIGURE 11. Phylogeny of the liparid clade Paraliparia from the majority rule (50%) consensus tree from the Bayesian inference of a 490 bp alignment of 270 cytochrome c oxidase subunit one gene (COI) sequences. Nodal values represent Bayesian posterior probabilities and bootstrap values from the maximum likelihood analysis (above and below, respectively). Species names are followed by a catalog number or BOLD "Sequence ID" number when represented by a sequence from a single specimen in our dataset. N indicates number of sequences, when multiple sequences support a branch tip. Only unique sequences were subjected to the analyses (Appendix Table 1); other identical sequences surveyed are listed in Appendix Table 2.
FIGURE 2 in Molecular phylogenetic analyses of Cucurbitaceae tribe Benincaseae urge for merging of Pilogyne with Zehneria
FIGURE 2. Bayesian consensus tree with Bayesian posterior probabilities (>0.80) and maximum likelihood bootstrap values (>60%) shown at the nodes.
FIGURE 9 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 9. Schematic transverse sections of mericarp of Schrenkia alaica Pimenov (Pimenov et al. 503, MW), drawn from Pimenov, Vasilieva et Lavrova 503.1 = exocarp; 2 = outer layer of mesocarp; 3 = middle (sclerenchymatous) layer of mesocarp; 4 = inner layer of mesocarp; 5 = endocarp; 6 = endosperm; 7 = vascular bundle of funicle; scale bar = 1mm.
FIGURE 7 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 7. Known geographical distribution of Schrenkia vaginata. Dots represent localities where herbarium specimens were collected. Details of accession codes are indicated in the Appendix.
FIGURE 4 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 4. Schematic transverse sections of mericarps. A. Schtschurowskia meifolia (Pimenov et al. 113, MW); B. Sclerotiaria pentaceros (Sovetkina, TAK). Fruits are not divided into two mericarps at maturity. A-B: redrawn from Politova (Politova, unpublished). 1 = exocarp; 2 = mesocarp: sclerenchymatous layer; 3 = secretory ducts; 4 = endosperm; scale bar= 1mm.
FIGURE 3 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 3. SEM micrographs of mericarp surfaces, (scale bar = 1000 μm) and schematic transverse sections of mericarps: A. smooth and glabrous in Schrenkia golickeana (Pimenov et al.135, MW); B. smooth with tubercles in Schrenkia papillaris (Pimenov et al.216, MW); C. ribbed with big hardened teeth in Lipskya insignis (Pimenov et al.380, MW).
FIGURE 1 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 1. Majority rule consensus tree (50%) of the Bayesian analysis of the ITS data. Numbers are posterior probabilities and maximum parsimony bootstrap support values. Scale bar corresponds to 0.1 substitutions per site. Members of the tribe Coriandreae are indicated by shading.
FIGURE 2 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 2. Majority rule consensus trees (50%) of the Bayesian analysis of the 45 accessions datasets. Numbers are posterior probabilities and maximum parsimony bootstrap support values. Scale bar corresponds to 0.1 substitutions per site.
FIGURE 6 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 6. Diversity of petals in the tribe Coriandreae: A. Bifora testiculata (Davis 28034, ANK); B. Coriandrum sativum (Grizi and Leinkram s.n., MHA) C. Schrenkia congesta (Pimenov et al.157, MW). A-C: redrawn from Politova (Politova, unpublished).
FIGURE 5 in Molecular phylogenetic and morphological analyses of the traditional tribe Coriandreae (Umbelliferae-Apioideae)
FIGURE 5. Schematic transverse sections of mericarps.A. Schrenkia golickeana (Pimenov et al.135, MW); B. Kosopoljanskya turkestanica (Pimenov et al. 891, MW). A-B: redrawn from Politova (Politova, unpublished). 1 = exocarp; 2 = mesocarp: sclerenchymatous layer; 3 = secterory ducts; 4 = endosperm; scale bar = 1mm.
FIGURE 1 in The phylogenetic position of Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta) based on molecular analyses and morphological observations of specimens from the type locality in Western Australia
FIGURE 1. Phylogenetic tree of the genus Polysiphonia sensu lato and outgroup taxon estimated with Maximum Likelihood (RAxML) analysis of rbcL sequences. Samples in bold type represent our data collected from Rottnest Island, Western Australia, while samples in plain type were downloaded from GenBank. Values at nodes indicate ML bootstrap support (BP) and the scale indicates substitutions per site.
FIGURE 2. Polysiphonia scopulorum Harvey. A in The phylogenetic position of Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta) based on molecular analyses and morphological observations of specimens from the type locality in Western Australia
FIGURE 2. Polysiphonia scopulorum Harvey. A: Tetrasporophyte (Rottnest Island, Australia; 11 November 2015); B & C: Prostrate axes and numerous erect axes; D: Unicellular rhizoid in open connection (arrowhead) with a pericentral cell and apex of prostrate axes (arrow); E: Unicellular rhizoid in open connection (arrowhead) with pericentral cell and erect axes (arrow); F: Irregular branching pattern; G: Scar cells on erect axes; H: Cross-section of erect axes; I: Discoid rhodoplasts in pericentral cells; J: Apical cell (arrowhead) and endogenous branching (arrows) in erect axes; K–M: Apical cell (arrowhead) and exogenous branching (arrows) in erect axes; N: Apex of erect axes (arrowhead: apical cell); O & P: Trichoblast; Q: Adventitious branch (arrowhead); R: Tetrahedrally divided tetrasporangia; S: Tetrasporangia (arrowheads) and trichoblast or scar cells (arrows); T: Cross-section of tetrasporangial branch (arrowheads: pericentral cells, arrows: presporangial cover cells, t: tetrasporangium, cc: central cell); U: Slightly spiral arrangement of tetrasporangial series (Scale bars: A = 5 mm, B, C, F = 500 μm; D, E, H, I, Q, R, S, T = 50 μm; G, P, U = 100 μm; J–M = 20 μm; N = 30 μm; O = 200 μm).
FIGURE 2 in Vanda malipoensis, a new species of Vanda (Orchidaceae: Epidendroideae; Vandeae) from China: evidence from morphological and molecular phylogenetic analyses
FIGURE 2. Bayesian tree from the analysis of the plastid DNA matrix. Numbers above branches are Bayesian posterior probabilities and bootstrap percentages (PP, BS ML, BS MP);''-'' indicates that the node receives less than 50% support in the corresponding analysis.
FIGURE 1 in Vanda malipoensis, a new species of Vanda (Orchidaceae: Epidendroideae; Vandeae) from China: evidence from morphological and molecular phylogenetic analyses
FIGURE 1. Bayesian tree from the analysis of the nrITS matrix. Numbers above branches are Bayesian posterior probabilities and bootstrap percentages (PP, BS , BS ); ''-'' indicates that the node receives less than 50% support in the corresponding analysis.
FIGURE 4. Vanda malipoensis L.H.Zou, J.X.Huang & Z.J.Liu. A. Flowering plant. B. Flower, front view. C. Column without anther cap. D in Vanda malipoensis, a new species of Vanda (Orchidaceae: Epidendroideae; Vandeae) from China: evidence from morphological and molecular phylogenetic analyses
FIGURE 4. Vanda malipoensis L.H.Zou, J.X.Huang & Z.J.Liu. A. Flowering plant. B. Flower, front view. C. Column without anther cap. D. Longitudinal section of flower (sepal and petal removed). E. Pollinarium.
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International Brain Laboratory public data
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OpenNeuro
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