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63 results for “Neighbor joining”
FIGURE 39. Neighbor–joining tree for 23 in Review of the genus Leucoma Hübner, 1822 (Lepidoptera: Erebidae: Lymantriinae) from China, with description of two new species
FIGURE 39. Neighbor–joining tree for 23 sequences of 11 species of Leucoma and two species of Lymantria based on K2P distance in DNA barcodes. Numbers on branches represent bootstrap support based on 1000 replicates; scale equals K2P genetic distance.
FIGURE 8. Neighbor-joining K2P in A shocking-red new species of Setanodosa Salmon, 1942 (Collembola: Brachystomellidae) from South Africa
FIGURE 8. Neighbor-joining K2P distance tree for COI of some Brachystomella and Setanodosa species (see Table 1 for locations).
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Description of a new Kempnyia Klapálek from Brazil (Plecoptera: Perlidae) with life stages associated using DNA barcodes
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (450 bp) from Kempnyia KlapÁlek and related stoneflies from Rio de Janeiro, Brazil modeled by Kimura-2-parameter (K2P).
FIGURE 10. Neighbor-joining ITS1 in Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions
FIGURE 10. Neighbor-joining ITS1 tree (Internal Transcribed Spacer 1). Terminal branches identified by NID numbers, taxon, location information and COI group. GenBank Accession sequences are highlighted in green, NID numbers from Criconema arkaense collection sites in Cordero et al. (2012) are highlighted in orange. Clade designation follows the COI tree structure. Red bootstrap values of 5,000 replications.
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Anacroneuria flintorum Froehlich 2002 (Plecoptera: Perlidae): Notes, distribution, and life stages association using molecular tools
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (433 bp) from Anacroneuria flintorum Froehlich and related stoneflies from Espírito Santo and São Paulo States, Brazil, modeled by Kimura-2-parameter (K2P).
FIGURE 9. Unrooted neighbor-joining tree inferred from a in A new species of nurse-frog (Aromobatidae, Allobates) from the Juami River basin, northwestern Brazilian Amazonia
FIGURE 9. Unrooted neighbor-joining tree inferred from a fragment of the mitochondrial 16S rDNA sampled from three type specimens of Allobates juami sp. nov. and other cis-Andean Allobates species. Clade labels indicate bootstrap support values (in percentage) estimated from 5,000 bootstrap replicates (only support values> 80% are shown). Locations in parentheses are provided for sequences obtained from non-topotypic voucher specimens.
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 CO1 sequences. Evolutionary distances were calculated using the p-distance model. Abbreviations: M = male, F = female. Sequences retrieved from BOLD (Ratasingham & Hebert 2007) are labelled with Process ID (see Appendix 1). See methods for details.
FIGURE 4. Phylogenetic relationships among the Desmarestia species. A. The neighbor-joining tree was constructed using 2,000 in Desmarestia japonica subsp. angustifolia (Desmarestiales, Phaeophyceae), a new subspecies from Korea
FIGURE 4. Phylogenetic relationships among the Desmarestia species. A. The neighbor-joining tree was constructed using 2,000 bootstrap replicates.
FIGURES NJ27–NJ30. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ27, Scrobipalpa acuminatella; NJ28, Sophronia gelidella; NJ29, Anthophila fabriciana; NJ30, Phiaris bipunctana. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ27–NJ30. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ27, Scrobipalpa acuminatella; NJ28, Sophronia gelidella; NJ29, Anthophila fabriciana; NJ30, Phiaris bipunctana.
FIGURES NJ17–NJ19, NJ21. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ17, Agonopterix conterminella. NJ18, Depressaria depressana; NJ19, Coleophora atriplicis; NJ21, Coleophora granulatella. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ17–NJ19, NJ21. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ17, Agonopterix conterminella. NJ18, Depressaria depressana; NJ19, Coleophora atriplicis; NJ21, Coleophora granulatella.
FIGURES NJ20, NJ22–NJ26. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ20, Coleophora glitzella; NJ22, Coleophora texanella; NJ23, Coleophora vitisella; NJ24, Scythris sinensis; NJ25, Altenia perspersella; NJ26, Gnorimoschema jalavai. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ20, NJ22–NJ26. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ20, Coleophora glitzella; NJ22, Coleophora texanella; NJ23, Coleophora vitisella; NJ24, Scythris sinensis; NJ25, Altenia perspersella; NJ26, Gnorimoschema jalavai.
FIGURES NJ7–NJ12. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ7, Parornix betulae; NJ8, Phyllonorycter maestingella; NJ9, Paraswammerdamia albicapitella; NJ10, Paraswammerdamia conspersella; NJ11, Plutella hyperboreella; NJ12, Lyonetia pulverulentella. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ7–NJ12. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ7, Parornix betulae; NJ8, Phyllonorycter maestingella; NJ9, Paraswammerdamia albicapitella; NJ10, Paraswammerdamia conspersella; NJ11, Plutella hyperboreella; NJ12, Lyonetia pulverulentella.
FIGURES NJ1–NJ6. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ1, Scardia amurensis; NJ2, Triaxomera parasitella; NJ3, Nemapogon cloacella; NJ4, Elabotia montelliella; NJ5, Tinea svenssoni; NJ6, Caloptilia suberinella. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ1–NJ6. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ1, Scardia amurensis; NJ2, Triaxomera parasitella; NJ3, Nemapogon cloacella; NJ4, Elabotia montelliella; NJ5, Tinea svenssoni; NJ6, Caloptilia suberinella.
FIGURE 2. The Neighbor-Joining tree for the cytochrome oxidase c subunit 1 in Mitochondrial diversity of the white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in Vietnam
FIGURE 2. The Neighbor-Joining tree for the cytochrome oxidase c subunit 1 (COI) gene fragment. The bootstrap values (≥ 50 %) obtained from 1000 pseudoreplications are presented above the branches. Crocidura olivieri is used as outgroup.
FIGURE 3. The Neighbor-Joining tree for the cytochrome b in Mitochondrial diversity of the white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in Vietnam
FIGURE 3. The Neighbor-Joining tree for the cytochrome b (cytb) gene fragment. Designations as on the Fig. 2. Suncus murinus and S. stoliczkanus are used as outgroup.
FIGURE 3. Neighbor-joining tree for Cytochrome C Oxidase Subunit I in Two new species and three new provincial records of Neoperla (Plecoptera: Perlidae) from Nanling Mountains, China
FIGURE 3. Neighbor-joining tree for Cytochrome C Oxidase Subunit I (COI) sequences (659 bp) from Neoperla annulatispina Mo, Li & Wang, sp. nov. and N. nigromarginata Li & Zhang, 2014, modeled by Kimura-2-parameter (K2P).
FIGURE 1. Neighbor-joining tree derived from mitochondrial cytochrome oxidase 1 in Identification of early life-history stages of Caribbean Apogon (Perciformes: Apogonidae) through DNA Barcoding
FIGURE 1. Neighbor-joining tree derived from mitochondrial cytochrome oxidase 1 sequences showing genetic lineages of Apogon species from Bahamas (BAH), Belize (BLZ), Curaçao (CUR), Florida (FCC, FWRI, SMS), and Saba Bank (SAB). L = larva, J = juvenile, A = adult.
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a in Report of two unrecorded yeast species in the class Tremellomycetes
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain DJ2-14-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position (Trees, 1987).
Figure 3. A neighbor joining tree using cytochrome c oxidase subunit 1 in DNA barcoding of black cherry aphid Myzus cerasi (Fabricus, 1775) (Hemiptera: Aphididae) populations collected from Prunus avium and Prunus cerasus
Figure 3. A neighbor joining tree using cytochrome c oxidase subunit 1 sequences from Myzus cerasi populations.
Fig. 1. A Neighbor Joining tree phylogram comparing 316 in Zoonotic and vector-borne pathogens in tigers from a wildlife safari park, Italy
Fig. 1. A Neighbor Joining tree phylogram comparing 316 bp 18S rRNA DNA Hepatozoon canis sequences from tigers, herein in bold, to other Hepatozoon spp. GenBank deposited sequences with Babesia canis as outgroup. Sequences are presented by GenBank accession number, host species and country of origin.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
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