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ShareScore release 0.9.0
Dataset results
69 results for “Network experimentation”
Data from: Plant species roles in pollination networks: an experimental approach
Open the record for dataset details and reuse information.
Simulation and experimental data of frequency domain and time domain optical signal measurements for optical network digital twins
<p>The dataset contains IQ optical constellation samples for 16-QAM optical connections. Data have been generated both experimentally and through simulations with a MATLAB-based simulator. Different configurations have been simulated: 62 lightpaths having a different number of spans and links and 4 soft-failures affecting a lightpath with increasing failure magnitude.</p>
Network topology and patch connectivity affect dynamics in experimental and model metapopulations
<p>Biological populations are rarely isolated in space and instead interact with others via dispersal in metapopulations. Theory predicts that network connectivity patterns can have critical effects on network robustness, as certain topologies, such as scale-free networks, are more tolerant to disturbances than other patterns. However, at present, experimental evidence of how these topologies affect population dynamics in a metapopulation framework is lacking. We used experimental metapopulations of the aquatic protist <i>Paramecium tetraurelia</i> to determine how network topology influences occupation patterns. We created metapopulations engineered to be comparable in linkage density, but differing in their degree distribution. We compared random networks to scale-free networks by evaluating local population occupancy and abundance throughout 18-30 protist generations. In parallel, we used simulations to explore differences in patch occupation patterns among topologies. Under one scenario, random metapopulations of P. tetraurelia reached higher abundance and higher occupancy (proportion of occupied patches) compared to scale-free systems in both experimental and simulated systems, while in the other both types of metapopulations performed similarly. Increasing patch degree (i.e., number of connections per patch) reduced the probability of extinction of local populations in both types of networks. We suggest the interaction between colonization/extinction rates and network topology alters the likelihood of rescue effects which results in differential patterns of occupancy and abundance in metapopulations.</p>
Supplementary material 1 from: Conan A, Fleitz J, Garnier L, Le Brishoual M, Handrich Y, Jumeau J (2022) Effectiveness of wire netting fences to prevent animal access to road infrastructures: an experimental study on small mammals and amphibians. In: Santos S, Grilo C, Shilling F, Bhardwaj M, Papp CR (Eds) Linear Infrastructure Networks with Ecological Solutions. Nature Conservation 47: 271-281. https://doi.org/10.3897/natureconservation.47.71472
Supplementary materials and methods
Data from: Comprehensive experimental fitness landscape and evolutionary network for small RNA
The origin of life is believed to have progressed through an RNA world, in which RNA acted as both genetic material and functional molecules. The structure of the evolutionary fitness landscape of RNA would determine natural selection for the first functional sequences. Fitness landscapes are the subject of much speculation, but their structure is essentially unknown. Here we describe a comprehensive map of a fitness landscape, exploring nearly all of sequence space, for short RNAs surviving selection in vitro. With the exception of a small evolutionary network, we find that fitness peaks are largely isolated from one another, highlighting the importance of historical contingency and indicating that natural selection would be constrained to local exploration in the RNA world.
Fig. 5. Experimental and calculated ECD spectra for compounds 1–6 in MS/MS-based molecular networking accelerated discovery of germacrane-type sesquiterpene lactones from Elephantopus scaber L
Fig. 5. Experimental and calculated ECD spectra for compounds 1–6 in MeOH.
Data from: Comprehensive experimental fitness landscape and evolutionary network for small RNA
Open the record for dataset details and reuse information.
Network topology and patch connectivity affect dynamics in experimental and model metapopulations
Open the record for dataset details and reuse information.
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.
GEO Series GSE67023. Bacillus subtilis. 268 samples. Type: Expression profiling by array.
Fangji Dihuang formulation ameliorated DNCB-induced atopic dermatitis-like skin lesions by IL-17 signaling pathway: Integrating network analysis and experimental validation
GEO Series GSE244430. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Molecular mechanisms of the Xiao-chai-hu-tang on chronic stress-induced colorectal cancer growth based on an integrated network pharmacology and RNA sequencing approach with experimental validation
GEO Series GSE276601. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Study of Retinoic Acid-Induced Osteoarthritis: Integrating RNA-sequencing, Network Pharmacology, Molecular Docking, and Experimental Validation
GEO Series GSE298569. Rattus norvegicus. 6 samples. Type: Expression profiling by high throughput sequencing.
Hippocampal gene network analysis to determine the effects of coral calcium hydride in an experimental model of accelerated senescence
GEO Series GSE31606. Mus musculus. 16 samples. Type: Expression profiling by array.
Single-Cell Transcriptomics Identifies Brain Endothelium Inflammatory Networks in Experimental Autoimmune Encephalomyelitis
GEO Series GSE199460. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
An Investigation of the Anticancer Mechanism of Caesalpinia sappan L. Extract Against Colorectal Cancer by Integrating a Network Pharmacological Analysis and Experimental Validation
GEO Series GSE313097. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Mechanisms of Action of Fu Fang Gang Liu Liquid in Treating Condyloma Acuminatum by Network Pharmacology and Experimental Validation
GEO Series GSE223380. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis [AGO2-RIP-Seq -miRNAs]
GEO Series GSE118302. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis.
GEO Series GSE118316. Homo sapiens. 138 samples. Type: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis [AGO2-RIP-Seq]
GEO Series GSE118299. Homo sapiens. 24 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis [Timecourse RNA-Seq]
GEO Series GSE118307. Homo sapiens. 69 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.