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501 results for “Phylogenetic tree”
Fig. 3. A neighbor-joining phylogenetic tree constructed from a in Isolation and characterization of two unrecorded yeast species in the phylum Basidiomycota
Fig. 3. A neighbor-joining phylogenetic tree constructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain DJ1-5-B-10C with closely related species. Bootstrap values (>70%) are shown at the branch nodes. Bar, 0.02 substitutions per nucleotide position.
Fig. 2. A neighbor-joining phylogenetic tree constructed from a in Isolation and characterization of two unrecorded yeast species in the phylum Basidiomycota
Fig. 2. A neighbor-joining phylogenetic tree constructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain B2UV-201 with closely related species. Bootstrap values (>70%) are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. A Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of two unrecorded yeast species in the order Filobasidiales
Fig. 3. A Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the rela- tionships of strain PG1-1-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 2. A Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of two unrecorded yeast species in the order Filobasidiales
Fig. 2. A Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relation- ships of strains GW1-3 with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a in Description of unrecorded wild yeasts from soil in Republic of Korea under cold conditions
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain PG3-4-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 2. A neighbor-joining phylogenetic tree reconstructed from a in Description of unrecorded wild yeasts from soil in Republic of Korea under cold conditions
Fig. 2. A neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain CY-9-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.02 substitutions per nucleotide position.
Figure. The phylogenetic tree showing the relationship among Brevibacillus parabrevis strains SA2.2 and TJ2.3, Bacillus licheniformis MG4.2, and their phylogenetically closest type strains. The GenBank accession numbers of the type strains and studied strains are shown following species names. Distance matrix was calculated by Kimura's 2-parameter model. The scale bar indicates 0.02 substitutions per nucleotide position. Alicyclobacillus pohliae AJ564766 served as an out-group. in Distribution of extracellular enzyme-producing bacteria in the digestive tracts of 4 brackish water fish species
Figure. The phylogenetic tree showing the relationship among Brevibacillus parabrevis strains SA2.2 and TJ2.3, Bacillus licheniformis MG4.2, and their phylogenetically closest type strains. The GenBank accession numbers of the type strains and studied strains are shown following species names. Distance matrix was calculated by Kimura's 2-parameter model. The scale bar indicates 0.02 substitutions per nucleotide position. Alicyclobacillus pohliae AJ564766 served as an out-group.
Text-fig. 6. Most parsimonious tree obtained after addition of Acaciaephyllum to the data set of Doyle (2008), with modifications discussed in the text, and with relationships of other taxa fixed with a backbone constraint tree based on results of Doyle (2008). Relative parsimony of alternative positions of Acaciaephyllum is indicated as in Text-fig. 2. Gnet = Gnetales. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 6. Most parsimonious tree obtained after addition of Acaciaephyllum to the data set of Doyle (2008), with modifications discussed in the text, and with relationships of other taxa fixed with a backbone constraint tree based on results of Doyle (2008). Relative parsimony of alternative positions of Acaciaephyllum is indicated as in Text-fig. 2. Gnet = Gnetales.
Text-fig. 4. Most parsimonious trees obtained after addition of Virginianthus (with "Liliacidites" minutus pollen) to the (A) D&E and (B) J/M trees. Relative parsimony of alternative positions of Virginianthus is indicated as in Text-fig. 2; abbreviations as in Text-fig. 1. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 4. Most parsimonious trees obtained after addition of Virginianthus (with "Liliacidites" minutus pollen) to the (A) D&E and (B) J/M trees. Relative parsimony of alternative positions of Virginianthus is indicated as in Text-fig. 2; abbreviations as in Text-fig. 1.
Text-fig. 2. Representative most parsimonious trees obtained after addition of Liliacidites to (A) the D&E tree (Text-fig. 1) and (B) the J/M tree, with relationships among major clades based on the plastid genome analyses of Jansen et al. (2007) and Moore et al. (2007). Thicker lines indicate all most parsimonious (MP), one step less parsimonious (MP+1), and two step less parsimonious (MP+2) positions for Liliacidites. Abbreviations as in Text-fig. 1. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 2. Representative most parsimonious trees obtained after addition of Liliacidites to (A) the D&E tree (Text-fig. 1) and (B) the J/M tree, with relationships among major clades based on the plastid genome analyses of Jansen et al. (2007) and Moore et al. (2007). Thicker lines indicate all most parsimonious (MP), one step less parsimonious (MP+1), and two step less parsimonious (MP+2) positions for Liliacidites. Abbreviations as in Text-fig. 1.
Text-fig. 3. One of two most parsimonious trees obtained after addition of Anacostia (with Similipollis pollen) to the D&E tree. Relative parsimony of alternative positions of Anacostia is indicated as in Text-fig. 2; abbreviations as in Text-fig. 1. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 3. One of two most parsimonious trees obtained after addition of Anacostia (with Similipollis pollen) to the D&E tree. Relative parsimony of alternative positions of Anacostia is indicated as in Text-fig. 2; abbreviations as in Text-fig. 1.
Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales.
Text-fig. 5. Most parsimonious trees obtained after addition of the Pennipollis plant to the (A) D&E and (B) J/M trees. Relative parsimony of alternative positions of the Pennipollis plant is indicated as in Text-fig. 2; abbreviations as in Text-fig. 1. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 5. Most parsimonious trees obtained after addition of the Pennipollis plant to the (A) D&E and (B) J/M trees. Relative parsimony of alternative positions of the Pennipollis plant is indicated as in Text-fig. 2; abbreviations as in Text-fig. 1.
Figure 6. Four most parsimonious phylogenetic trees for 12S in New insight into the systematic position of the endemic Madagascan genus Amberiana (Hemiptera: Heteroptera: Dinidoridae) using 12S rDNA sequences
Figure 6. Four most parsimonious phylogenetic trees for 12S rDNA sequences of 28 species used in this study generated using the maximum parsimony method. Bootstrap support is indicated at nodes; the frame shows the clade consisting of Amberiana montana and Sehirus luctuosus.
Figure 5. Phylogenetic tree for 12S in New insight into the systematic position of the endemic Madagascan genus Amberiana (Hemiptera: Heteroptera: Dinidoridae) using 12S rDNA sequences
Figure 5. Phylogenetic tree for 12S rDNA sequences of 28 species used in this study generated by using the maximum likelihood method. Bootstrap support is indicated at nodes; the frame shows the clade consisting of Amberiana montana and Sehirus luctuosus.
Figure 4. Phylogenetic tree for 12S in New insight into the systematic position of the endemic Madagascan genus Amberiana (Hemiptera: Heteroptera: Dinidoridae) using 12S rDNA sequences
Figure 4. Phylogenetic tree for 12S rDNA sequences of 28 species used in this study generated by using the minimum evolution method. Bootstrap support is indicated at nodes; the frame shows the clade consisting of Amberiana montana and Sehirus luctuosus.
Figure. Interferon alpha-A based phylogenetic tree (neighbor joining method) constructed by MEGA 6.1 for Punjab urial in comparison with other mammalian species sequences available from GenBank (NCBI). in Characterization of interferon alpha of major histocompatibility complex class I in Punjab urial (Ovis vignei punjabiensis)
Figure. Interferon alpha-A based phylogenetic tree (neighbor joining method) constructed by MEGA 6.1 for Punjab urial in comparison with other mammalian species sequences available from GenBank (NCBI).
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I in Phylogenetic relationship among slender loris species (Primates, Lorisidae: Loris) in Sri Lanka based on mtDNA CO1 barcoding
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I (CO1) sequences from 7 different slender loris (Loris) taxas, rooted using slow loris (Nycticebus) sequences deposited in the GenBank.
Figure 2 in A completely resolved phylogenetic tree of British spiders (Arachnida: Araneae)
Figure 2. Selected morphological character states mapped onto the phylogenetic tree of British linyphiid spiders. The framework provided by the phylogenetic information allows the clear identification of patterns of character evolution, including a considerable degree of homoplasy for all characters. The definition of characters and character states is based on the linyphiid identification key by Anna Stäubli, provided on the Spiders of Europe website. The order of columns (from left to right) follows the order of the legends (from top to bottom). The left block of columns refers to characters applying to the male, the right to characters of the female. The female of Centromerus minutissimus has not yet been described.
Figure 1 in A completely resolved phylogenetic tree of British spiders (Arachnida: Araneae)
Figure 1. Fully resolved phylogenetic tree of the British spider species. All non-British spider families with European representatives are included for reference, and the tree is rooted using Liphistiidae as the outgroup. Branch lengths are arbitrary and do not indicate the timing or degree of divergence. For readability, species from the same family are shown in the same colour.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.