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288 results for “Root effect”

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dryad36/100

Data from: Effects of light quality on colonization of tomato roots by arbuscular mycorrhizal fungus (AMF) and implications for growth and defense

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publicMay 2023View details →
dryad36/100

Drought effects on root and shoot traits and their decomposability

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publicJan 2023View details →
dryad36/100

Data from: Local soil legacy effects in a multi-species grassland community are underlain by root foraging and soil nutrient availability

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publicJul 2020View details →
dryad36/100

Root functional traits determine the magnitude of the rhizosphere priming effect among eight tree species

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publicFeb 2023View details →
dryad36/100

Phylogeny overrides environmental effects in explaining leaf and root nutrient concentrations in Fabaceae

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publicAug 2025View details →
edi36/100

Kinetic Model Data: Effect of Calcium on the Bioavailability of Dissolved Uranium (VI) in Plant Roots under Circumneutral pH

We integrated field measurements, hydroponic experiments, microscopy, and spectroscopy to investigate the effect of Ca(II) on dissolved U(VI) uptake by plants in 1 mM HCO3 − solutions at circumneutral pH. The accumulation of U in plants (3.1−21.3 mg kg−1) from the stream bank of the Rio Paguate, Jackpile Mine, New Mexico served as a motivation for this study. Brassica juncea was the model plant used for the laboratory experiments conducted over a range of U (30−700 μg L−1) and Ca (0−240 mg L−1) concentrations. The initial U uptake followed pseudo-second-order kinetics. The initial U uptake rate (V0) ranged from 4.4 to 62 μg g−1 h−1 in experiments with no added Ca and from 0.73 to 2.07 μg g−1 h−1 in experiments with 12 mg L−1 Ca. No measurable U uptake over time was detected for experiments with 240 mg L−1 Ca. Ternary Ca−U−CO3 complexes may affect the decrease in U bioavailability observed in this study. Elemental X-ray mapping using scanning transmission electron microscopy−energy dispersive spectrometry detected U−P-bearing precipitates within root cell walls in water free of Ca. These results suggest that root interactions with Ca and carbonate in solution affect the bioavailability of U in plants. This study contributes relevant information to applications related to U transport and remediation of contaminated sites.

openCC (other)Mar 2020View details →
edi36/100

Schizachyrium scoparium seedling root and shoot biomass: Interactive Effects of Fertility and Distribution on Plant Community Diversity and Structure

There are four levels of nitrogen, corresponding to treatments A, C, F and G in E001, applied at the same time as in that experiment. For a description of fertilizer added to E052, see file fertilization details. There are four levels of soil disturbance designated 1, 2, 3 and 4. Level 1: undisturbed Level 2: 1 pass with a 7 HP Honda rear-tined rototiller with the elevator set to till to a depth of 9 inches Level 3: 2 passes or however many required to produce about 50% bare ground Level 4: 3 passes or however many required to produce 100% bare ground. This requires 3 passes in some plots but 5 or 6 in others. In addition, all woody vegetation not destroyed by tilling is cut at the base. Rototilling is applied in late April. Each fertilization treatment receives each disturbance treatment, for a total of sixteen treatments. There are four replicates of each of the sixteen treatments. In addition, the four extreme ends (lowest N, lowest disturbance; highest N, lowest disturbance, etc. ) are replicated an additional ten times. Treatments are applied in a completely randomized design. Each of the 104 plots is 5m x 5m. Measurements taken at E052 will include: 1) species abundances, 2) community biomass allocation to leaves/roots/stems/flowers, 3) above and below ground net primary production and 4) rates of nitrogen mineralization. For a list of treatments, see the treatment layouts in file trmte52. The plots in E052 are enclosed by a fence to exclude mammalian herbivores. Galvanized welded-wire hardware cloth with 6mm x 6mm openings was buried to a depth of 50cm. Additional hardware cloth extends 60cm above the ground and poultry netting extends to 2m above the ground. In 1990, ten plots of each of four treatments (N1D1, N1D4, N4D1, N4D4, where N is the level of nitrogen added and D is the disturbance treatment) were randomly selected for the competition experiment. The above and belowground effects of neighbors on transplanted grass seedlings were measured using three

openCC0Jan 2018View details →
edi36/100

Root biomass data: Interactive Effects of Fertility and Distribution on Plant Community Diversity and Structure

There are four levels of nitrogen, corresponding to treatments A, C, F and G in E001, applied at the same time as in that experiment. For a description of fertilizer added to E052, see file fertilization details. There are four levels of soil disturbance designated 1, 2, 3 and 4. Level 1: undisturbed Level 2: 1 pass with a 7 HP Honda rear-tined rototiller with the elevator set to till to a depth of 9 inches Level 3: 2 passes or however many required to produce about 50% bare ground Level 4: 3 passes or however many required to produce 100% bare ground. This requires 3 passes in some plots but 5 or 6 in others. In addition, all woody vegetation not destroyed by tilling is cut at the base. Rototilling is applied in late April. Each fertilization treatment receives each disturbance treatment, for a total of sixteen treatments. There are four replicates of each of the sixteen treatments. In addition, the four extreme ends (lowest N, lowest disturbance; highest N, lowest disturbance, etc. ) are replicated an additional ten times. Treatments are applied in a completely randomized design. Each of the 104 plots is 5m x 5m. Measurements taken at E052 will include: 1) species abundances, 2) community biomass allocation to leaves/roots/stems/flowers, 3) above and below ground net primary production and 4) rates of nitrogen mineralization. For a list of treatments, see the treatment layouts in file trmte52. The plots in E052 are enclosed by a fence to exclude mammalian herbivores. Galvanized welded-wire hardware cloth with 6mm x 6mm openings was buried to a depth of 50cm. Additional hardware cloth extends 60cm above the ground and poultry netting extends to 2m above the ground. In 1990, ten plots of each of four treatments (N1D1, N1D4, N4D1, N4D4, where N is the level of nitrogen added and D is the disturbance treatment) were randomly selected for the competition experiment. The above and belowground effects of neighbors on transplanted grass seedlings were measured using three

openCC0Jan 2018View details →
edi36/100

Root carbon/nitrogen data: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.

openCC0Jan 2018View details →
edi36/100

Invasion strip root biomass: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.

openCC0Jan 2018View details →
edi36/100

Root biomass data: Interactive Effects of Deer, Fire and Nitrogen

In 2000 we began to examine impacts of three anthropogenic effects on successional grasslands in an area with rapid woody encroachment toward white pine forest. We established a factorial experiment that manipulates N (0 or 3 g m-2 yr-1), fire (none or every 2nd year), and deer (fenced or open to deer), with a total of 32 plots, each 20 x 20 m. We hypothesized that the response of this ecosystem to the combined effects of fire, N, and herbivory would depend on the ability of pine and other species to invade and the magnitude of their response to the different disturbance factors: warm-season grasses increase with and encourage fire, resist herbivores, and inhibit woody plant invasion (Davis et al. 1998, Inouye et al. 1994); cool-season plants are favored by N deposition (Tilman 1987) but are fire-intolerant and palatable to herbivores; legumes tolerate fire but decrease with herbivory and N deposition; and finally, woody plants are fire-intolerant and may be more susceptible to herbivory. We are measuring treatment effects on composition and diversity of plants and consumers (insects, small mammals, lizards) as well as plant and soil C and N.

openCC0Jan 2018View details →
edi36/100

Root biomass data: Effect of Burning Patterns on Vegetation in the Fish Lake Burn Compartments

This study examines the effects of long-term prescribed burning treatments on vegetation structure and composition, productivity, and nutrient cycling in upland oak savanna and woodland vegetation. The basis for the study is an ongoing, experimental prescribed burning program begun in 1964 at Cedar Creek, and a similar program operating since 1962 on the adjacent Helen Allison Savanna property (owned by The Nature Conservancy). These prescribed burning programs are designed to subject upland oak communities (and some old fields) to different burn frequencies and patterns of burning, with the ultimate objectives of 1) restoring and maintaining the historically important savanna and open woodland vegetation, and 2) providing information about the effects of different burning patterns on vegetation structure and composition. This study addresses the latter of these two purposes and expands on it by also investigating possible influences of fire on resource availability (nutrients, water, and light) and net primary productivity. This study represents a continuation and expansion of experiments 015 and 094.

openCC0Jan 2018View details →
edi36/100

Root ingrowth biomass: Effect of Burning Patterns on Vegetation in the Fish Lake Burn Compartments

This study examines the effects of long-term prescribed burning treatments on vegetation structure and composition, productivity, and nutrient cycling in upland oak savanna and woodland vegetation. The basis for the study is an ongoing, experimental prescribed burning program begun in 1964 at Cedar Creek, and a similar program operating since 1962 on the adjacent Helen Allison Savanna property (owned by The Nature Conservancy). These prescribed burning programs are designed to subject upland oak communities (and some old fields) to different burn frequencies and patterns of burning, with the ultimate objectives of 1) restoring and maintaining the historically important savanna and open woodland vegetation, and 2) providing information about the effects of different burning patterns on vegetation structure and composition. This study addresses the latter of these two purposes and expands on it by also investigating possible influences of fire on resource availability (nutrients, water, and light) and net primary productivity. This study represents a continuation and expansion of experiments 015 and 094.

openCC0Jan 2018View details →
edi36/100

Root biomass data: The Effect of Nitrogen Addition and Irrigation in High Diveristy Prairies

Water and nitrogen are two potentially major limiting resources in prairie grasslands of the region, and thus might be added to restored high-diversity grasslands used for biofuel production. In this full-factorial experiment, 36 high-diversity 9 m x 9 m plots that were planted with 32 species in 1994 were randomly assigned to one of six treatments. Treatments were all combination of a water treatment (ambient rainfall or ambient rainfall plus ~ 2 cm/week of irrigation) and of a nitrogen treatment (annual nitrogen addition of 0, 7, or 14 grams of N - as ammonium nitrate - per square meter). Aboveground biomass is harvested each fall in each plot, dried, and weighed. These treatments are determining the importance of both water and N limitation in high-diversity restored prairie grassland, their interactive effects, and the year-to-year variation in yields and treatment effects. They are also determining the potential sustainability of such yields and the effects of the various treatments on plant diversity.

openCC0Jan 2018View details →
edi36/100

Root biomass data: Fire X Nitrogen: Interactive Effects in a Prairie-Like Grassland

This experiment was established on top of E002 in field B. In the spring of 1992, 3 randomly chosen replicates of each nutrient treatment of experiment E002 were chosen to be burned each spring. For a description of these plots, see E002. For a list of treatments, see the treatment layouts in file trmte98.

openCC0Jan 2018View details →
edi36/100

Root carbon/nitrogen data: Fire X Nitrogen: Interactive Effects in a Prairie-Like Grassland

This experiment was established on top of E002 in field B. In the spring of 1992, 3 randomly chosen replicates of each nutrient treatment of experiment E002 were chosen to be burned each spring. For a description of these plots, see E002. For a list of treatments, see the treatment layouts in file trmte98.

openCC0Jan 2018View details →
edi36/100

Root biomass data: Herbivory by Nitrogen Interactive Effects on Community and Ecosystem Processes and Dynamics

E172 is an herbivory experiment established by Dave Tilman in fall 2004 by enclosing in deer fences three randomly selected plots from the six replicates of each control and each treatment in the N addition E001 experiment in field C. These plots still receive the nutrient treatments prescribed in the Experiment 001 protocols. From 1982-2004 a fence containing all of e001 plots in Field C was designed to exclude deer and all small mammals, including mice, voles and pocket gophers. This fence was removed in Fall of 2004 and individual plots designated for e172 were enclosed in deer fences. The purpose of E001 was to measure how adding nitrogen over a long time would affect the number of species, the type of species present, the amount of annual growth, and the change from year to year in the growth of each species in a plant community which is also relieved of grazing by large and small mammals. There are 8 different levels of nitrogen addition with other nutrients added to ensure that nitrogen remains the limiting nutrient, and a control which receives no nutrients. The plots are in a 6 by 9 grid and are 4 by 4 meters in size with 1 meter aisles between plots. Nitrogen fertilizer (NH4NO3) is applied twice per year, once in early May and once in late June.

openCC0Jan 2018View details →
edi36/100

Root carbon/nitrogen data: Herbivory by Nitrogen Interactive Effects on Community and Ecosystem Processes and Dynamics

E172 is an herbivory experiment established by Dave Tilman in fall 2004 by enclosing in deer fences three randomly selected plots from the six replicates of each control and each treatment in the N addition E001 experiment in field C. These plots still receive the nutrient treatments prescribed in the Experiment 001 protocols. From 1982-2004 a fence containing all of e001 plots in Field C was designed to exclude deer and all small mammals, including mice, voles and pocket gophers. This fence was removed in Fall of 2004 and individual plots designated for e172 were enclosed in deer fences. The purpose of E001 was to measure how adding nitrogen over a long time would affect the number of species, the type of species present, the amount of annual growth, and the change from year to year in the growth of each species in a plant community which is also relieved of grazing by large and small mammals. There are 8 different levels of nitrogen addition with other nutrients added to ensure that nitrogen remains the limiting nutrient, and a control which receives no nutrients. The plots are in a 6 by 9 grid and are 4 by 4 meters in size with 1 meter aisles between plots. Nitrogen fertilizer (NH4NO3) is applied twice per year, once in early May and once in late June.

openCC0Jan 2018View details →
edi36/100

Root tissue carbon and nitrogen:Effect of Burning Patterns on Vegetation in the Fish Lake Burn Compartments

This study examines the effects of long-term prescribed burning treatments on vegetation structure and composition, productivity, and nutrient cycling in upland oak savanna and woodland vegetation. The basis for the study is an ongoing, experimental prescribed burning program begun in 1964 at Cedar Creek, and a similar program operating since 1962 on the adjacent Helen Allison Savanna property (owned by The Nature Conservancy). These prescribed burning programs are designed to subject upland oak communities (and some old fields) to different burn frequencies and patterns of burning, with the ultimate objectives of 1) restoring and maintaining the historically important savanna and open woodland vegetation, and 2) providing information about the effects of different burning patterns on vegetation structure and composition. This study addresses the latter of these two purposes and expands on it by also investigating possible influences of fire on resource availability (nutrients, water, and light) and net primary productivity. This study represents a continuation and expansion of experiments 015 and 094.

openCC0Feb 2018View details →
dryad32/100

Data from: Allelopathic effects of volatile organic compounds released from Pinus halepensis needles and roots

The Mediterranean region is recognized as a global biodiversity hotspot. However, over the last decades, the cessation of traditional farming in the north part of Mediterranean basin has given way to strong afforestation leading to occurrence of abandoned agricultural lands colonized by pioneer expansionist species like Pinus halepensis. This pine species is known to synthesize a wide range of secondary metabolites and previous studies have demonstrated strong allelopathic potentialities of its needle and root leachates. Pinus halepensis is also recognized to release significant amounts of volatile organic compounds (VOC) with potential allelopathic effects that has never been investigated. In this context, the objectives of the present study were to improve our knowledge about the VOC released from P. halepensis needles and roots, determine if these VOC affect the seed germination and root growth of two herbaceous target species (Lactuca sativa and Linum strictum), and evaluate if soil microorganisms modulate the potential allelopathic effects of these VOC. Thirty terpenes were detected from both needle and root emissions with β-caryophyllene as the major volatile. Numerous terpenes, such as β-caryophyllene, -terpinene or -pinene showed higher headspace concentrations according to the gradient green needles < senescent needles < needle litter. Seed germination and root growth of the two target species were mainly reduced in presence of P. halepensis VOC. In strong contrast with the trend reported with needle leachates in literature, we observed an increasing inhibitory effect of P. halepensis VOC with the progress of needle physiological stages (i.e. green needle < senescent needle < needle litter). Surprisingly, several inhibitory effects observed on filter paper were also found or even amplified when natural soil was used as a substrate, highlighting that soil microorganisms do not necessarily limit the negative effects of VOC released by P. halepensis on herbaceous target species.

opencc-zeroJul 2020View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record