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79
datasets available to search
ShareScore release 0.9.0
Dataset results
79 results for “Three-dimensional Genome”
The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC [HiChIP]
GEO Series GSE239992. Homo sapiens; human gammaherpesvirus 4. 4 samples. Type: Other.
Genome-wide analysis of control and MMP-14 (MT1-MMP) expressing MCF-7 cells growing in three-dimensional (3D) type I collagen gels versus monolayer cell culture conditions
GEO Series GSE49595. Homo sapiens. 12 samples. Type: Expression profiling by array.
HNF1B induced three-dimensional genome analysis of patient-derived pancreas neoplasm organoids [RNA-seq]
GEO Series GSE202022. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Three-dimensional genome structures of single mammalian sperm
GEO Series GSE277040. Homo sapiens; Mus musculus. 1549 samples. Type: Other.
The dynamic three-dimensional organization of the diploid yeast genome
GEO Series GSE88952. Saccharomyces cerevisiae; Saccharomyces paradoxus; Saccharomyces paradoxus x Saccharomyces uvarum; Saccharomyces uvarum; Saccharomyces cerevisiae x Saccharomyces uvarum; Saccharomyces cerevisiae x Saccharomyces paradoxus. 44 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations
GEO Series GSE73785. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation [RNA-Seq]
GEO Series GSE185469. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Three-dimensional folding and functional organization principles of the Drosophila genome
GEO Series GSE34453. Drosophila melanogaster. 2 samples. Type: Other.
H3K9ac-marked three-dimensional genome dynamics in rice under drought stress [ChIP-Seq]
GEO Series GSE242453. Oryza sativa. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiChIP)
GEO Series GSE185883. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional structure of Epstein-Barr virus genome varies by latency type and is regulated by PARP1 enzymatic activity
GEO Series GSE159837. Homo sapiens; human gammaherpesvirus 4. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Chromatin condensation is independent from nuclear condensation in late-stage terminal erythropoiesis revealed from the dynamic three-dimensional genomic organizations [Hi-C]
GEO Series GSE184974. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC [ChIP-seq]
GEO Series GSE239987. human gammaherpesvirus 4. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
HNF1B induced three-dimensional genome analysis of patient-derived pancreas neoplasm organoids [HiC]
GEO Series GSE202021. Homo sapiens. 5 samples. Type: Other.
Elafin as a Prognostic Marker in Esophageal Squamous Cell Carcinoma: A Pilot Study using Three-Dimensional Imag-ing and Genomic Profiling
GEO Series GSE205623. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Three-dimensional genome structures of single mammalian sperm [bulk Hi-C]
GEO Series GSE277018. Mus musculus. 2 samples. Type: Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (RNA-seq)
GEO Series GSE185881. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Histone H3K4 methylation regulation and three-dimensional aggregating distribution of a subset of genomic loci mediated by CHD3 homolog PKL in Arabidopsis [Hi-C]
GEO Series GSE305652. Marchantia polymorpha. 2 samples. Type: Other.
Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus. [4C-seq]
GEO Series GSE147274. Homo sapiens. 46 samples. Type: Other.
H3K9ac-marked three-dimensional genome dynamics in rice under drought stress
GEO Series GSE242460. Oryza sativa. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.