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Data from: Diversity and distribution of Wolbachia in relation to geography, host plant affiliation and life cycle of a heterogonic gall wasp
Background: The maternally inherited endosymbiont Wolbachia is widespread in arthropods and nematodes and can play an important role in the ecology and evolution of its host through reproductive manipulation. Here, we survey Wolbachia in Belonocnema treatae, a widely distributed North American cynipid gall forming wasp that exhibits regional host specialization on three species of oaks and alternation of sexually and aseuxlly reproducing generations. We investigated whether patterns of Wolbachia infection and diversity in B. treatae are associated with the insect's geographic distribution, host plant association, life cycle, and mitochondrial evolutionary history. Results: Screening of 463 individuals from 23 populations including sexual and asexual generations from all three host plants across the southern U.S. showed an average infection rate of 56% with three common Wolbachia strains: wTre1-3 and an additional rare variant wTre4. Phylogenetic analysis based on wsp showed that these strains are unrelated and likely independently inherited. We found no difference in Wolbachia infection frequency among host plant associated populations or between the asexual and sexual generations, or between males and females of the sexual generation. Partially incomplete Wolbachia transmission rates might explain the occurrence of uninfected individuals. A parallel analysis of the mitochondrial cytochrome oxidase I gene in B. treatae showed high mtDNA haplotype diversity in both infected and uninfected populations suggesting an ancestral infection by Wolbachia as well as a clear split between eastern and western B. treatae mtDNA clades with a sequence divergence of > 6%. The strain wTre1 was present almost exclusively in the western clade while wTre2 and wTre3 occur almost exclusively in eastern populations. In contrast, the same strains co-occur as double-infection in Georgia and triple-infections in two populations in central Florida. Conclusions: The diversity of Wolbachia across geographically and genetically distinct populations of B. treatae and the co-occurrence of the same strains within three populations highlights the complex infection dynamics in this system. Moreover, the association of distinct Wolbachia strains with mitochondrial haplotypes of its host in populations infected by different Wolbachia strains suggests a potential role of the endosymbiont in reproductive isolation in B. treatae.
FIGURES 18–22 in Subfamilial affiliation of Neoscirula (Acari: Prostigmata: Cunaxidae) and descriptions of three new species of this genus from Brazil
FIGURES 18–22. Neoscirula queirozi sp. nov. Male. 18. Dorsum. 19. Venter. 20. Palp. 21. Chelicera. 22. Hypognathum.
FIGURES 23–26 in Subfamilial affiliation of Neoscirula (Acari: Prostigmata: Cunaxidae) and descriptions of three new species of this genus from Brazil
FIGURES 23–26. Neoscirula queirozi sp. nov. Male. 23a. Tarsus I, semilateral view. 23b. Tarsus I, dorsal view. 24. Leg II. 25. Leg III. 26. Leg IV.
FIGURES 12–17 in Subfamilial affiliation of Neoscirula (Acari: Prostigmata: Cunaxidae) and descriptions of three new species of this genus from Brazil
FIGURES 12–17. Neoscirula flechtmanni sp. nov. Male. 12a. Dorsum. 12b. Sensilla vi. 13. Venter. 14. Leg I. 15. Leg II. 16. Leg III. 17. Leg IV
FIGURES 3–7 in Subfamilial affiliation of Neoscirula (Acari: Prostigmata: Cunaxidae) and descriptions of three new species of this genus from Brazil
FIGURES 3–7. Neoscirula flechtmanni sp. nov. Female. 3a. Dorsum. 3b. Sensilla vi. 3c. Sensilla sce. 4. Venter. 5. Palp. 6. Chelicera. 7. Hypognathum.
FIGURES 27–31 in Subfamilial affiliation of Neoscirula (Acari: Prostigmata: Cunaxidae) and descriptions of three new species of this genus from Brazil
FIGURES 27–31. Neoscirula oliveirai sp. nov. Female. 27. Dorsum. 28. Venter. 29. Palp. 30. Chelicera. 31. Hypognathum.
FIGURE 8. Q in Larval morphology of selected Quedius Stephens, 1829 (Coleoptera: Staphylinidae: Staphylinini) with comments on their subgeneric affiliation
FIGURE 8. Q. fuliginosus (A), Q. brevis (B), Q. cruentus (C, D), Q. cinctus (E–G) mature larvae, fore leg. A–D, segments of fore leg in anterior aspect; E–G, comb of bifurcate setae on tibia with code. Abbreviations: Cb, comb; Cx, coxa; Fe, femur; Tb, tibia; Tr, trochanter; Tu, tarsungulus.
FIGURE 7. Q in Larval morphology of selected Quedius Stephens, 1829 (Coleoptera: Staphylinidae: Staphylinini) with comments on their subgeneric affiliation
FIGURE 7. Q. brevis (A, B), Q. microps (C), Q. mesomelinus (D), Q. fuliginosus (E, F), Q. boops (G) mature larvae, labium and hypopharynx. A, prementum with ligula in ventral aspect; B, C, labial palp in ventral aspect; D, E, hypopharynx; F, G, ligula. Abbreviations: I–II, segments of labial palp; Lg, ligula; Lp, labial palp; Pmnt, prementum; Sm, sensillum; Dmt, dorsal microtrichia.
FIGURE 9. Q in Larval morphology of selected Quedius Stephens, 1829 (Coleoptera: Staphylinidae: Staphylinini) with comments on their subgeneric affiliation
FIGURE 9. Q. brevis (A–G) mature larvae, thorax and abdomen. A–C, pro- (A), meso- (B), metanotum (C) in dorsal aspect; D, setae on mesonotum; E–F, apex of setae on mesonotum; G, abdominal segment I and II in dorsal aspect. Abbreviations: I–III, segments; Te, tergite.
FIGURE 4. Q in Larval morphology of selected Quedius Stephens, 1829 (Coleoptera: Staphylinidae: Staphylinini) with comments on their subgeneric affiliation
FIGURE 4. Q. fuliginosus (A), Q. brevis (B, E, G), Q. mesomelinus (C), Q. microps (D), Q. cinctus (F), mature larvae, right antenna in dorsal aspect. A–D, general view; E, F, sensory appendage of antennal segment III; G, apex of antennal segment IV. Abbreviations: I–IV, antennal segments; Sa, sensory appendages; So, solenidium.
FIGURE 6. Q in Larval morphology of selected Quedius Stephens, 1829 (Coleoptera: Staphylinidae: Staphylinini) with comments on their subgeneric affiliation
FIGURE 6. Q. brevis (A–F), Q. fuliginosus (G, H), Q. cruentus (I), Q. microps (J, K), mature larvae, right maxilla in dorsal aspect. A, cardo and stipes with microtrichia (B); C, G, J, maxillary palp; D, E, apex of segment III of maxillary palp; F, apex of right mala; H, K, right mala in dorsal aspect. Abbreviations: I–III, segments of maxillary palp; Cd, cardo; Dmt, dorsal microtrichia; Ma, mala; Mp, maxillary palp; Pf, palpifer; Sa, sensory appendage; So, solenidium; St, stipes.
Altmetric data of the documents from Web of Science with the affiliation to the Czech Republic
<p>These datasets were generated for the master thesis with the title "Altmetrics and its use in the evaluation of scientific research" (in Czech "Altmetrie a její využití při hodnocení vědeckého výzkumu"), that was submitted in 2022 at the Institute Information Studies and Librarianship, Charles University, Prague, Czech Republic. There are 3 files, where the first one "Příloha_číslo_1-processed_data.xlsx" contains processed and analyzed data from the other two. "Příloha_číslo_2-data_altmetrics_Kvet_1st_download.csv" is the file with raw altmetric data downloaded on the 9/1/2022. "Příloha_číslo_3-data_altmetrics_Kvet_2st_download.csv" are the same data but downloaded two months later to see the difference.</p> <p>Altmetric data came from PlumX and Altmetric.com aggregators. Before publishing them here there were completely anonymized so there is no possibility to assign them to particular research papers. Dataset contains altmetric data of the research documents published in the period from 2017 to 2021. All documents have affiliation to the Czech Republic.</p> <p>The tool for collection and analyzation is available on Github here: <a href="https://github.com/kvetjo/Altmetrics_analyze_tool">https://github.com/kvetjo/Altmetrics_analyze_tool</a></p> <p>Thesis reference in Czech:</p> <p>KVĚT, Jonáš. <em>Altmetrie a její využití při hodnocení vědeckého výzkumu</em> [online]. Praha, 2022 [cit. 2022-05-03]. Diplomová práce. Univerzita Karlova. Filozofická fakulta. Ústav informačních studií a knihovnictví. Vedoucí práce Jan Dvořák.</p>
Subspecies and Distribution. L.a.americanusErxleben,1777—C&ECanada(SENorthwestTerritories,SENunavut,mostAlberta,Saskatchewan,andManitoba,S&SEOntario,Quebec,L.a.,andNewfoundland),alsoinNCUSA(NEMontanaandNorthDakota). L.a.bairdiiHayden,1869—SWCanada(SEBritishColumbiaandSWAlberta)andWCUSA(W&CMontana,Idaho,W&SCWyoming,NE&CUtah,NW&CColorado,andNCNewMexico). L.a.cascadensisNelson,1907—SWCanada(SCBritishColumbia)andNWUSA(SC,C&NCWashington). L.a.columbiensisRhoads,1895—RockyMtsinSWCanada(SEBritishColumbia,WCAlberta),andNWUSA(NEtipofWashington). L.a.dalliMerriam,1900—Alaska(USA)andNWCanada(NWAlberta,NBritishColumbia,YukonexcepttheNtip,S&WNorthwestTerritories). L.a.klamathensisMerriam,1899—WUSA(SWOregonandNCalifornia). L.a.oregonusOrr,1934—WUSA(NE&COregon). L.a.pallidusCowan,1938—SWCanada(WC&CBritishColumbia). L.a.phaeonotusJ.A.Allen,1899—WGreatL.a.RegioninSCCanada(SEtipofSaskatchewan,SManitoba,SWOntario)andNCUSA(NEtipofNorthDakota,Minnesota,NWisconsin,andNMichigan). L.a.pineusDalquest,1942—SWCanada(SCtipofBritishColumbia)andNWUSA(EWashington,NIdaho,NWtipofMontana). L.a.seclususBaker&Hankins,1950—NCUSA(SCtipofMontana,NCtipofWyoming). L.a.struthopusBangs,1898—ECanada(EQuebec,NewBrunswick,NovaScotia,PrinceEdwardI)andNEUSA(Maine). L.a.tahoensisOrr,1933—WUSA(ECCaliforniaandWCNevada). L.a.virgtnianusHarlan,1825—SECanada(SOntario,SQuebec)andNE&EUSA(fromMainetoPennsylvaniaandextremeNEOhio,TennesseeandNorthCarolina). L. a. washingtonBaird, 1855 — SW Canada (SW tip of British Columbia) and NW USA (W Washington and W Oregon). The Snowshoe Hare has been introduced by founder individuals of unknown subspecies affiliation to Kodiak I (Alaska) and Anticosti I (Quebec, Canada). in Leporidae
Subspecies and Distribution. L.a.americanusErxleben,1777—C&ECanada(SENorthwestTerritories,SENunavut,mostAlberta,Saskatchewan,andManitoba,S&SEOntario,Quebec,L.a.,andNewfoundland),alsoinNCUSA(NEMontanaandNorthDakota). L.a.bairdiiHayden,1869—SWCanada(SEBritishColumbiaandSWAlberta)andWCUSA(W&CMontana,Idaho,W&SCWyoming,NE&CUtah,NW&CColorado,andNCNewMexico). L.a.cascadensisNelson,1907—SWCanada(SCBritishColumbia)andNWUSA(SC,C&NCWashington). L.a.columbiensisRhoads,1895—RockyMtsinSWCanada(SEBritishColumbia,WCAlberta),andNWUSA(NEtipofWashington). L.a.dalliMerriam,1900—Alaska(USA)andNWCanada(NWAlberta,NBritishColumbia,YukonexcepttheNtip,S&WNorthwestTerritories). L.a.klamathensisMerriam,1899—WUSA(SWOregonandNCalifornia). L.a.oregonusOrr,1934—WUSA(NE&COregon). L.a.pallidusCowan,1938—SWCanada(WC&CBritishColumbia). L.a.phaeonotusJ.A.Allen,1899—WGreatL.a.RegioninSCCanada(SEtipofSaskatchewan,SManitoba,SWOntario)andNCUSA(NEtipofNorthDakota,Minnesota,NWisconsin,andNMichigan). L.a.pineusDalquest,1942—SWCanada(SCtipofBritishColumbia)andNWUSA(EWashington,NIdaho,NWtipofMontana). L.a.seclususBaker&Hankins,1950—NCUSA(SCtipofMontana,NCtipofWyoming). L.a.struthopusBangs,1898—ECanada(EQuebec,NewBrunswick,NovaScotia,PrinceEdwardI)andNEUSA(Maine). L.a.tahoensisOrr,1933—WUSA(ECCaliforniaandWCNevada). L.a.virgtnianusHarlan,1825—SECanada(SOntario,SQuebec)andNE&EUSA(fromMainetoPennsylvaniaandextremeNEOhio,TennesseeandNorthCarolina). L. a. washingtonBaird, 1855 — SW Canada (SW tip of British Columbia) and NW USA (W Washington and W Oregon). The Snowshoe Hare has been introduced by founder individuals of unknown subspecies affiliation to Kodiak I (Alaska) and Anticosti I (Quebec, Canada).
Subspecies and Distribution. R.a.affinusR.a.,1821—SThailand,MalayPeninsula,andSingapore. R.a.bancanaLyon,1906—BangkaI,Indonesia. R.a.baramensisBonhote,1900—NBorneo,inSabah,Brunei,Sarawak,andNEKalimantan,alsoinBanggiIandlikelyadjacentIs. R.a.bunguranensisThomas&Hartert,1894—LautandBunguranIsoftheNorthNatunaIs,Indonesia. R.a.cothurnataLyon,1911—WBorneo(WestKalimantan). R.a.ephippiumS.Miiller,1838—SEBorneoandLautI,Indonesia. R.a.hypoleucosHorsfield,1823—Sumatraandadjacentislands(TuangkuI,PiniIandTanahmasaI),Indonesia. R.a.insignisMiller,1903—RiauIs,Indonesia. R. a. polia Lyon, 1906 — Belitung I, Indonesia. Population on Serasan I, one of the South Natuna Is (just off W coast of Borneo) and populations of many islands between Malay Peninsula and E Sumatra are of unknown subspecific affiliation. in Sciuridae
Subspecies and Distribution. R.a.affinusR.a.,1821—SThailand,MalayPeninsula,andSingapore. R.a.bancanaLyon,1906—BangkaI,Indonesia. R.a.baramensisBonhote,1900—NBorneo,inSabah,Brunei,Sarawak,andNEKalimantan,alsoinBanggiIandlikelyadjacentIs. R.a.bunguranensisThomas&Hartert,1894—LautandBunguranIsoftheNorthNatunaIs,Indonesia. R.a.cothurnataLyon,1911—WBorneo(WestKalimantan). R.a.ephippiumS.Miiller,1838—SEBorneoandLautI,Indonesia. R.a.hypoleucosHorsfield,1823—Sumatraandadjacentislands(TuangkuI,PiniIandTanahmasaI),Indonesia. R.a.insignisMiller,1903—RiauIs,Indonesia. R. a. polia Lyon, 1906 — Belitung I, Indonesia. Population on Serasan I, one of the South Natuna Is (just off W coast of Borneo) and populations of many islands between Malay Peninsula and E Sumatra are of unknown subspecific affiliation.
Respons Pengguna Twitter terhadap Kegiatan Shopee Affiliator di Twitter
<p>No description provided.</p>
Geographic COVID Subreddit Affiliations
<p>Geographic affiliations of explicitly geographically-linked COVID subreddits from Reddit.</p>
Gender labels for Spanish affiliated researchers
<p>Three test sets compiled using the Ranking of researchers in Spain and Spaniards abroad: https://www.webometrics.info/en/GoogleScholar/Spain.</p> <p> </p>
Datasets and analysis for "Geographical trends in academic conferences: an analysis on authors' affiliations"
<p>Datasets and analysis for "Geographical trends in academic conferences: an analysis on authors' affiliations"</p>
Fig. 1 in Ultrastructural and immunocytochemical investigation of paramylon combined with new 18S rDNA-based secondary structure analysis clarifies phylogenetic affiliation of Entosiphon sulcatum (Euglenida: Euglenozoa)
Fig. 1 Phylograms obtained from maximum likelihood (ML) analyses of 182 euglenozoan taxa with new 18S rDNA sequences boxed and most ingroup taxa pruned to major groupings, sequences of Heterolobosea and Jakobida were used as outgroup. Congruent Bayesian inference (BI) posterior probability values>0.50 were mapped onto both ML trees and are
Fig. 4 in Ultrastructural and immunocytochemical investigation of paramylon combined with new 18S rDNA-based secondary structure analysis clarifies phylogenetic affiliation of Entosiphon sulcatum (Euglenida: Euglenozoa)
Fig. 4 Schematic phylogram combining molecular and morphological findings corroborating phylogenetic position of Entosiphon as sister group of Helicales within Euglenida. States of key characters are illustrated tabularly: black squares code presence and blanks absence, e.g., paramylon is present only in Entosiphon and Helicales. Unpaired base in 18S rDNA helix 44 is present in primordial petalomonads and kinetoplastids, but absent in more derived taxa within respective groups. White Roman numerals depict heterogeneous dispersal of different types of feeding apparatuses (FA) according to Triemer and Farmer (1991), white Arabic numerals count for number of rods in FA. Heterolobosea and Jakobida represent outgroup taxa
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.