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157 results for “carbon dynamics”

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zenodo36/100

Data set related to the manuscript "Ionic liquids under confinement: From systematic variations of the ion and pore sizes towards an understanding of structure and dynamics in complex porous carbons"

<p>Graphical files in the agr format for all the figures in the main text of the manuscript entitled &quot;Ionic liquids under confinement:&nbsp; From systematic variations of the ion and pore sizes towards an understanding of structure and dynamics in complex porous carbons&quot; (10.1021/acsami.9b16740). Example of input file for one of the systems simulated.</p>

opencc-by-4.0Dec 2019View details →
dryad36/100

Data from: High rates of carbon and dinitrogen fixation suggest a critical role of benthic pioneer communities in the energy and nutrient dynamics of coral reefs

<p>1. Following coral mortality in tropical reefs, pioneer communities dominated by filamentous and crustose algae efficiently colonize substrates previously occupied by coral tissue. This phenomenon is particularly common after mass coral mortality following prolonged bleaching events associated with marine heatwaves.</p> <p>2. Pioneer communities play an important role for the biological succession and reorganization of reefs after disturbance. However, their significance for critical ecosystem functions previously mediated by corals, such as the efficient cycling of carbon (C) and nitrogen (N) within the reef, remains uncertain.</p> <p>3. We used 96 carbonate tiles to simulate the occurrence of bare substrates after disturbance in a coral reef of the central Red Sea. We measured rates of C and dinitrogen (N<sub>2</sub>) fixation of pioneer communities on these tiles monthly over an entire year. Coupled with elemental and stable isotope analyses, these measurements provide insights into macronutrient acquisition, export, and the influence of seasonality.</p> <p>4. Pioneer communities exhibited high rates of C and N<sub>2</sub> fixation within 4 – 8 weeks after the introduction of experimental bare substrates. Ranging from 13 to 25 μmol C cm<sup>−2</sup> d<sup>−1</sup> and 8 to 54 nmol N cm<sup>−2</sup> d<sup>−1</sup>, respectively, C and N<sub>2</sub> fixation rates were comparable to reported values for established Red Sea coral reefs. This similarity indicates that pioneer communities may quickly compensate for the loss of benthic productivity by corals. Notably, between 40 and 85% of fixed organic C was exported into the environment, constituting a vital source of energy for the coral reef food web.</p> <p>5. Our findings suggest that benthic pioneer communities may play a crucial, yet overlooked role in the C and N dynamics of oligotrophic coral reefs by contributing to the input of new C and N after coral mortality. While not substituting other critical ecosystem functions provided by corals (e.g. structural habitat complexity and coastal protection), pioneer communities likely contribute to maintaining coral reef nutrient cycling through the accumulation of biomass and import of macronutrients following coral loss.</p>

opencc-zeroJul 2020View details →
zenodo36/100

Datasets for the article "Emerging patterns of CO2:O2 dynamics in rivers and their link to ecosystem carbon processing "

<p>Datasets supporting the article "Emerging patterns of CO2:O2 dynamics in rivers and their link to ecosystem carbon processing". The datasets are analized using the acompanying repository in github (https://github.com/rocher-ros/O2_CO2_rivers).</p> <p>&nbsp;</p> <p>Currently the publication is under review, for further information and details on the analysis visit the github repository or the acompannying article.&nbsp;</p>

opencc-by-4.0Oct 2024View details →
dryad36/100

Data from: dammed ponds! a study of post-fire sediment and carbon dynamics in beaver ponds and their contributions to watershed resilience

<p>Beaver ponds were surveyed as part of an effort to quantify post-fire sediment dynamics in beaver ponds. Forty-eight beaver ponds in the northern Colorado Rocky Mountains were surveyed between June and August, 2022. We quantified the current and remaining sediment storage capacities within ponds with sediment depth surveys, and we calculated sedimentation rates by analyzing stratigraphy within pond sediment cores.</p>

opencc-zeroJan 2024View details →
zenodo36/100

Data set related to the manuscript "Dynamics and energetics of ion adsorption at the interface between a pure ionic liquid and carbon electrodes"

<p>Text files with data for plotting figures in the quoted manuscript. Example input files for simulations.</p>

opencc-by-4.0Feb 2024View details →
zenodo36/100

Size-Dependent Dynamics of the Internal Carbon Pool Drive Isotopic Vital Effects in Calcifying Phytoplankton

<p>Isotopic offsets in biogenic calcite from equilibrium values can provide unique insights into the physiology and mechanisms of carbon regulation in calcifying phytoplankton. This study examines the impact of varying CO2 (controlled via pH) on five coccolithophore species chosen for varied cell sizes, physiology, and calcification. The study investigates isotopic offsets in coccolith calcite and organic matter, in relation to carbon demand and supply (<i>µ</i>/CO2). Species-specific CO2/pH optima for growth (<i>µ</i>opt) were derived from variations in growth rates with varying CO2 concentrations. Growth rates for all species declined with rising CO2 (decreasing pH) due to H+-driven inhibition. <i>C. braarudii&nbsp;</i>and<i> C. leptoporus</i> exhibited high <i>µ</i>opt values (suggesting high carbon-demand) and limited growth under low CO2 (high pH) suggesting carbon limitation. Under low CO2 supply, when growth rates were CO2-limited, both species exhibited coincident isotopic depletion in calcite and organic matter as a consequence of CO2 diffusion into the cell that experienced no equilibration as a result of a highly depleted internal carbon pool. In these two species, isotopic values in calcite &nbsp;remained unaffected by growth rates and CO2 concentration (<i>µ</i>/CO2) when CO2&nbsp;was sufficient for optimal growth. <i>G. huxleyi&nbsp;</i>and<i> G. oceanica&nbsp;</i>displayed optima for growth (<i>µ</i>opt) at low CO2 concentrations and showed no growth limitation under low CO2 (indicating low carbon-demand). Both species experienced depleted (negative) vital effects caused by an excess of CO2 diffusion&nbsp;into the small internal carbon pool of the cell when diffusive carbon supply outpaced low demand (low <i>µ</i>/CO2). Enriched (positive) vital effects were observed under low carbon supply and high demand, likely due to diffusive loss of CO2 from the cell's intracellular carbon pool&nbsp;due to a lower intracellular pH. <i>C. carterae</i> exhibited an intermediate <i>µ</i>opt and isotopically equilibrated intracellular carbon pool such that δ13C values in calcite and organic matter suggested a shared carbon pool. This study illustrates that pH-CO2 driven vital effects and fractionation into organic matter indicate the residence time for carbon in the intracellular carbon pool, and the size of this pool is proportional to cell size. <i>C. leptoporus&nbsp;</i>and<i> C. carterae</i> can elevate intracellular pH to minimise CO2 leakage, whereas vital effects in <i>G. huxleyi</i> and <i>G. oceanica&nbsp;</i>are caused by diffusive CO2 due to the small size of their internal carbon pool.</p>

opencc-by-4.0Oct 2023View details →
dryad36/100

Empirical data and model simulations of the effect of repeated hurricanes on soil carbon dynamics in a humid tropical forest

<p>Increasing hurricane frequency and intensity with climate change is likely to affect soil organic carbon (C) stocks in tropical forests. We examined the cycling of C between soil pools and with depth at the Luquillo Experimental Forest in Puerto Rico in soils over a 30-year period that spanned repeated hurricanes. We used a non-linear matrix model of soil C pools and fluxes ("soilR") and constrained the parameters with soil and litter survey data. Soil chemistry and stable and radiocarbon isotopes were measured from three soil depths across a topographic gradient in 1988 and 2018. Our results suggest that pulses and subsequent reduction of inputs caused by severe hurricanes in 1989, 1998, and two in 2017 led to faster mean transit times and younger mean ages of soil C in the particulate, occluded, and mineral-associated soil organic matter pools at 0–10 cm and 35–60 cm depths relative to a modeled control soil with constant inputs over the thirty years. Between 1988 and 2018, the occluded C stock increased, and d<sup>13</sup>C in all pools decreased, while changes in particulate and mineral-associated C were undetectable. The differences between 1988 and 2018 suggest that hurricane disturbance results in a dilution of the occluded light C pool with an influx of young, debris-deposited C, and possible microbial scavenging of old and young C in the particulate and mineral-associated pools. These effects led to a younger total soil C pool with faster mean transit times. Our results suggest that increasing frequency of intense hurricanes will speed up rates of C cycling in tropical forests, and eventually lead to net losses of C from tropical forest soils.</p>

opencc-zeroMar 2024View details →
zenodo36/100

Data for: Nitrogen dynamics and carbon sequestration in soil following application of digestates from one- and two-step anaerobic digestion

<p>Data set for article <span>Nitrogen dynamics and carbon sequestration in soil following application of digestates from one- and two-step anaerobic digestion (https://doi.org/10.1016/j.scitotenv.2022.158177).</span></p>

opencc-by-4.0Apr 2024View details →
dryad36/100

Data from: Watershed classification predicts streamflow regime and organic carbon dynamics in the Northeast Pacific Coastal Temperate Rainforest

<p class="Abstract">Watershed classification has long been a key tool in the hydrological sciences, but few studies have been extended to biogeochemistry. We developed a combined hydro-biogeochemical classification for watersheds draining to the coastal margin of the Northeast Pacific coastal temperate rainforest (1,443,062<i> </i>km<sup>2</sup>), including 2,695 small coastal rivers (SCR) and 10 large continental watersheds. We used cluster analysis to group SCR watersheds into 12 types, based on watershed properties. The most important variables for distinguishing SCR watershed types were evapotranspiration, slope, snowfall, and total precipitation. We used both streamflow and dissolved organic carbon (DOC) measurements from rivers (<i>n</i> = 104 and 90 watersheds respectively) to validate the classification. Watershed types corresponded with broad differences in streamflow regime, mean annual runoff, DOC seasonality, and mean DOC concentration. These links between watershed type and river conditions enabled the first region-wide empirical characterization of river hydro-biogeochemistry at the land-sea margin, spanning extensive ungauged and unsampled areas. We found very high annual runoff (mean &gt; 3000 mm, <i>n</i> = 10) in three watershed types totaling 59,024 km<sup>2</sup> and ranging from heavily glacierized mountain watersheds with high flow in summer to a rain-fed mountain watershed type with high flow in fall-winter. DOC hotspots (mean &gt; 4 mg L<sup>-1</sup>, <i>n</i> = 14) were found in three other watershed types (48,557 km<sup>2</sup>) with perhumid rainforest climates and less-mountainous topography. We described four patterns of DOC seasonality linked to watershed hydrology, with fall-flushing being widespread. Hydro-biogeochemical watershed classification may be useful for other complex regions with sparse observation networks.</p>

opencc-zeroJan 2022View details →
dryad36/100

Data from: Decipher soil organic carbon dynamics and driving forces across China using machine learning

<p><span><span>The dynamics of soil organic carbon (SOC) play a critical role in modulating global warming. However, the long-term spatiotemporal changes of SOC at large scale and the impacts of driving forces remain unclear. In this study, we investigated the dynamics of SOC in different soil layers across China through the 1980s to 2010s using a machine learning approach and quantified the impacts of the key factors based on factorial simulation experiments. Our results showed that the latest (2000-2014) SOC stock in the first meter soil (SOC<sub>100</sub>) was 80.68 ± 3.49 Pg C, of which 42.6% was stored in the top 20 cm, sequestrating carbon with a rate of 30.80 </span><span>± 12.37</span><span> g C m<sup>-2</sup> yr<sup>-1</sup> since the 1980s. Our experiments focusing on the recent two periods (2000s and 2010s) revealed that climate change exerted the largest relative contributions to SOC dynamics in both layers and warming or drying can result in SOC loss. However, the influence of climate change weakened with soil depth, while the opposite for vegetation growth. </span><span>Relationships between SOC and forest canopy height further confirmed this strengthened impact of vegetation with soil depth, and highlighted the carbon sink function of deep soil in mature forest. Moreover, our estimates suggested that SOC dynamics in 71% of topsoil were controlled by climate change and its coupled influence with environmental variation (CE). Meanwhile CE and the combined influence of climate change and vegetation growth dominated the SOC dynamics in 82.05% of the first meter soil. </span><span>Additionally, the national cropland topsoil organic carbon increased with a rate of 23.6 </span><span>± 7.6 </span><span>g C m<sup>-2</sup> yr<sup>-1</sup> since the 1980s, and the widely applied nitrogenous fertilizer was a key stimulus. </span><span>Overall, our study extended the knowledge about the dynamics of SOC and deepened our understanding about the impacts of the primary factors.</span></span></p>

opencc-zeroApr 2022View details →
zenodo36/100

Carbon isotopic constraints on basin-scale vertical and lateral particulate organic carbon dynamics in the northern South China Sea

<p>This dataset includes:(1) Table S1. Time-series of total mass fluxes, POC content, POC fluxes, Lithogeinic matter content,&nbsp;&nbsp;lithogenic matter flux, C/N mole ratio,as well as the&nbsp;POC isotopic compositions (&delta;<sup>13</sup>C, <em>F</em><sub>m</sub>) for sediment trap intercepted sinking particles (n = 59) in the northern South China Sea basin . (2) Table S2. Time-series monthly dust deposition (dry+wet) at station SCS-N of northern South China Sea basin. (3) Table S3. POC content and radiocarbon isotopic compositions for sediment trap intercepted bulk organic carbon from the South China Sea supplementary to one-year time series (2014-2015) published in Blattmann, T.M. et al., 2018. Geophysical Research Letters, 45(17): 9077-9086. (4) Table S4. Time-series clay mineral content and compositions for sediment trap intercepted sinking particles from the South China Sea supplementary to one-year time series (2009-2010) published in Schroeder A. et al., 2015 . Earth Planet. Sci. Lett. 430: 30&ndash;42.&nbsp;The dataset is archived in .xlsx data format, consists of four&nbsp;data files with data size of 34 KB.</p>

opencc-by-4.0May 2022View details →
dryad36/100

Plant litter chemistry controls coarse-textured soil carbon dynamics

<p>1. As soils store more carbon (C) than the Earth's atmosphere and terrestrial biomass together, the balance between soil C uptake in the form of soil organic matter and release as CO2 upon its decomposition is a critical determinant in the global C cycle regulating our planet's climate. Although plant litter is the predominant source of C fueling both soil C build-up and losses, the issue of how litter chemistry influences this balance remains unresolved.</p> <p>2. As a contribution to solving that issue, we traced the fate of C during near-complete decomposition of 13C-labelled leaf and root litters from 12 plant species in a coarse-textured soil. We separated the soil organic carbon (SOC) into mineral-associated organic matter (MAOM) and particulate organic matter (POM) pools, and investigated how 14 litter chemical traits affected novel SOC formation and native SOC mineralization (i.e., the priming effect) in these soil fractions.</p> <p>3. We observed an overall net increase in SOC due to the addition of litter, which was stronger for root than for leaf litters. The presumed stable MAOM-C pool underwent both substantial stabilization and mineralization, whereas the presumably less stable POM-C pool showed substantial stabilization and reduced mineralization. Overall, the initial increase in soil C mineralization was fully counterbalanced by a later decrease in native soil C mineralization. POM-C formation as well as MAOM-C formation and mineralization were positively related to the initial litter lignin concentration and negatively to that of the nitrogen leachates, whereas the opposite was observed for POM-C mineralization.</p> <p>4. Synthesis. Our results highlight the importance of litter chemical traits for SOC formation, and stabilization, destabilization, and mineralization. In our coarse-textured soil, the amount of MAOM-C did not change despite large C fluxes through this pool. The litter chemical traits that drove these processes differed from those frequently reported for fine-textured soils far from mineral-associated C saturation. To account for these discrepancies, we propose an integrative perspective in which litter quality and soil texture interactively control soil C fluxes by modulating several SOC stabilization and destabilization mechanisms. Irrespective, our results open new critical perspectives for managing soil C pools globally.</p>

opencc-zeroSep 2022View details →
zenodo36/100

Temporal dynamics of canopy properties and carbon and water fluxes in a temperate evergreen angiosperm forest

<p>Dataset and code for the Manuscript "<span>Temporal dynamics of canopy properties and carbon and water fluxes in a temperate evergreen angiosperm forest"</span></p>

opencc-by-4.0Apr 2024View details →
zenodo36/100

Data set related to the manuscript "Investigating the effect of particle size distribution and complex exchange dynamics on NMR spectra of ions diffusing in disordered porous carbons through a mesoscopic model"

<p>Graphical files in the agr format for all the figures in the manuscript entitled "Investigating the effect of particle size distribution and complex exchange dynamics on NMR spectra of ions diffusing in disordered porous carbons through a mesoscopic model". XYZ files giving the particles and bulk positions in the lattices are also provided.</p>

opencc-by-4.0May 2024View details →
zenodo36/100

Data supporting "Seasonal dynamics and punctuated carbon sink reduction suggest photosynthetic capacity of boreal silver birch is reduced by the accumulation of hexose"

<p>Data supporting our New Phytologist publication: "Seasonal dynamics and punctuated carbon sink reduction suggest photosynthetic capacity of boreal silver birch is reduced by the accumulation of hexose". The file present the data produced during long-term (three consecutive years 2019-2021) field observations and short-term girdling manipulation of top-crown shoots in three mature <em>Betula pendula</em> trees as details of our manuscript. Values of leaf gas-exchange, environmental variables, leaf water and nitrogen status, and concentrations of sucrose, hexoses (glucose and fructose), starch, total sugar, and total non-structural carbohydrate in leaves are listed.&nbsp;</p>

opencc-by-4.0Jun 2024View details →
zenodo36/100

Supplementary materials for "Effects of mesozooplankton growth and reproduction on plankton and organic carbon dynamics in a marine biogeochemical model"

<h2>Overview</h2> <p>This folder contains supplementary materials corresponding to the analysis conducted for "Effects of mesozooplankton growth and reproduction on plankton and organic carbon dynamics in a marine biogeochemical model". The folder is structured into two .zip files. <a href="../api/records/10720907/draft/files/ZENODO_PISCES_MLC.zip/content" target="_blank" rel="noopener noreferrer">ZENODO_PISCES_MLC.zip</a> contains the analysis presented in the paper. BDM-MAREDAT-ZENODO.zip contains the outputs from the Biomass Distribution Models pipeline developped by Nielja Knecht (<a href="../doi/10.5281/zenodo.7888451">10.5281/zenodo.7888451</a>) applied to the MAREDAT mesozooplankton product.&nbsp;</p> <h2>ZENODO_PISCES_MLC Folder Structure</h2> <h3>BDM</h3> <ul> <li><strong>MAREDAT_TUNED_SDM.csv</strong>: This file contains the BDM mesozooplankton biomass monthly climatology from MAREDAT data.</li> </ul> <h3>CODE</h3> <p>This directory contains Jupyter Notebook files (<code>.ipynb</code>) and related Python scripts used for data analysis and visualization. Below is a list of the files:</p> <ul> <li><strong>Code_Fig3_FigA8_FigA17.ipynb</strong>: Jupyter Notebook for generating figures 3, A8, and A17.</li> <li><strong>Code_Fig4.ipynb</strong>: Jupyter Notebook for generating figure 4.</li> <li><strong>Code_Fig5_FigA12_FigA13.ipynb</strong>: Jupyter Notebook for generating figures 5, A12, and A13.</li> <li><strong>Code_Fig6.ipynb</strong>: Jupyter Notebook for generating figure 6.</li> <li><strong>Code_Fig7.ipynb</strong>: Jupyter Notebook for generating figure 7.</li> <li><strong>Code_FigA10.ipynb</strong>: Jupyter Notebook for generating figure A10.</li> <li><strong>Code_FigA11.ipynb</strong>: Jupyter Notebook for generating figure A11.</li> <li><strong>Code_FigA14.ipynb</strong>: Jupyter Notebook for generating figure A14.</li> <li><strong>Code_FigA15.ipynb</strong>: Jupyter Notebook for generating figure A15.</li> <li><strong>Code_FigA16.ipynb</strong>: Jupyter Notebook for generating figure A16.</li> <li><strong>Code_FigA1.ipynb</strong>: Jupyter Notebook for generating figure A1.</li> <li><strong>Code_FigA2.ipynb</strong>: Jupyter Notebook for generating figure A2.</li> <li><strong>Code_FigA6_FigA7.ipynb</strong>: Jupyter Notebook for generating figures A6 and A7.</li> <li><strong>Code_FigA9.ipynb</strong>: Jupyter Notebook for generating figure A9.</li> <li><strong>Code_POC_metrics_not_in_the_paper.ipynb</strong>: Jupyter Notebook containing metrics related to particulate organic carbon (POC) not included in the paper.</li> <li><strong>Code_Table3.ipynb</strong>: Jupyter Notebook for generating table 3.</li> <li><strong>Code_Table4.ipynb</strong>: Jupyter Notebook for generating table 4.</li> <li><strong>Code_Table5.ipynb</strong>: Jupyter Notebook for generating table 5.</li> <li><strong>GlobalEstimatesAbstract.ipynb</strong>: Jupyter Notebook containing global estimates abstract.</li> <li><strong>mlctools</strong>: Python package containing utility functions for the analysis.</li> </ul> <h3>OBS</h3> <p>This directory contains observed data used in the analysis:</p> <ul> <li><strong>BATS_zooplankton.csv</strong>: Zooplankton data from the Bermuda Atlantic Time-series Study (BATS).</li> <li><strong>CHL2.nc</strong>: Chlorophyll data in NetCDF format.</li> <li><strong>climatology_n_0_5.nc</strong>: Climatological data in NetCDF format.</li> <li><strong>HOTS_zooplankton.csv</strong>: Zooplankton data from the Hawaii Ocean Time-series (HOTS).</li> </ul> <h3>OUTPUT</h3> <p>This directory contains output files from PISCES simulations (yearly, monthly and 5-day-average outputs).&nbsp;</p> <ul> <li><strong>0class</strong>: Output files for the '0class' classification corresponding to PISCES-v2.</li> <li><strong>0classregrid</strong>: Regridded output files for the '0class' classification corresponding to PISCES-v2.</li> <li><strong>10classes</strong>: Output files for the '10classes' classification corresponding to PISCES-MOG.</li> <li><strong>10classesregrid</strong>: Regridded output files from PISCES-MOG.</li> <li><strong>2classes</strong>: Output files from PISCES-MOG-2LS.</li> <li><strong>2classesregrid</strong>: Regridded output files from PISCES-MOG-2LS.</li> <li><strong>NOALLOregrid</strong>: Regridded output files from PISCES-MOG-NA.</li> </ul> <h3>PLOT</h3> <p>This directory contains plots generated during the analysis:</p> <h3>TEMP</h3> <p>This directory contains temporary files used during the analysis, including data files and matrices.</p> <h2>BDM-MAREDAT-ZENODO Folder&nbsp;</h2> <p>BDM-MAREDAT-ZENODO.zip contains the outputs from the Biomass Distribution Models pipeline developped by Nielja Knecht (<a href="../doi/10.5281/zenodo.7888451">10.5281/zenodo.7888451</a>) applied to the MAREDAT mesozooplankton product.&nbsp;</p> <p>For any inquiries or data access requests, please contact corentin.clerc -at- usys.ethz.ch</p>

opencc-by-4.0Feb 2024View details →
zenodo36/100

Nanoporous carbon structures of different densities generated through GAP molecular dynamics

<p>These nanoporous (NP) carbon atomic structures, in extendend&nbsp;XYZ format, have been generated using a melt-graphitization-quench molecular dynamics (MD) protocol using a&nbsp;Gaussian interatomic potential (GAP) for amorphous carbon [1]. Simulation details and characterization of structural and mechanical properties will follow shortly in a scientific paper.</p> <p><strong>References</strong></p> <p>[1]&nbsp;M.A. Caro. GAP interatomic potential for amorphous carbon (2.0) [Data set]. Zenodo, 10.5281/zenodo.5243184 (2021).</p>

opencc-by-4.0Sep 2021View details →
dryad36/100

Home-field advantage meets priming effect in root decomposition: Implications for belowground carbon dynamics

<p>1. Home-field advantage (HFA) states that litter decomposes faster in 'home' than in 'away' soil, due to the specialization of decomposer organisms in decomposing litter derived from their local plant community. Demonstration of the HFA effect has been overwhelmingly based on aboveground leaf litter despite the fact that roots play a pivotal role in carbon (C) and nutrient cycling.</p> <p>2. Labile C input in root exudates and newly shed root litters can enhance the activity of soil microorganisms, which in turn can favor the breakdown of older root litter, also referred to as the priming effect. It remains, however, unclear how the addition of fresh root-derived inputs affects HFA on the decomposition of absorptive roots (ARs) and transport roots (TRs), which have a different chemical composition.</p> <p>3. Here, we conducted a two-stage (endogenous C consumption versus exogenous C priming) reciprocal transplant microcosm experiment to explore the effects of HFA on the decomposition of lower-quality ARs and higher-quality TRs of two subtropical tree species (Pinus elliottii and Cunninghamia lanceolata) and their responses to either labile (glucose) or recalcitrant (fresh ARs) C additions.</p> <p>4. Decomposition of lower-quality ARs exhibited neutral HFA, while decomposition of higher-quality TRs exhibited positive HFA. The absence of HFA for short-lived ARs was possibly due to the legacy effect of their chemical defenses on decomposition. The neutral HFA for ARs became negative with glucose addition, which was linked to the dissimilarity of fungal community between the home and away soils. Neither glucose nor fresh ARs additions changed the HFA pattern of TRs, implying that these long-lived roots play a reinforced role in soil C accumulation when they decompose away from their origins.</p> <p>5. These results indicate that the effect of HFA on decomposition differs between ARs and TRs, and could be modified by the priming effect induced by the root-derived C input. In general, our findings highlight that complex 'HFA-priming' interactions on root decomposition should be explicitly considered in the paradigm of belowground C dynamics.</p>

opencc-zeroDec 2022View details →
zenodo36/100

Supplementary material/Organic carbon dynamics in clay soils: impact of management practices on microorganism structure and abundance under semi-arid conditions

<p>Proper management of soil organic matter in arid and semi-arid regions improves organic carbon storage in the soil, helps in compact soil degradation, and mitigates climate change impacts, and preserves ecosystem functionality and sustainability food security. This study aims to provide a better insight into the biogeochemical processes that drive the organic carbon dynamics of saline clay soil in a semi-arid climate. The study is not intended to be exhaustive but contributes to analyzing the relationship between bacterial microflora, physicochemical properties, and organic carbon dynamics as a function of different soil management modes. The monitoring was carried out on three different plots located at the National Institute of Agronomic Research of Algeria. A physicochemical characterization of the soils was performed. A metagenomic study was also conducted to identify bacterial biodiversity using PCR-amplified DNA sequencing. The study results show that the control plot has the highest average organic carbon stock value at 47 Mg ha<sup>-1</sup>. This was followed by the amended plot and the conventional plot, respectively, with 43 Mg ha<sup>-1</sup> and 38 Mg ha<sup>-1</sup>. In the context of this study, organic carbon dynamics would appear to depend on the interaction of several biotic and abiotic factors. Soil management methods would impact the density and diversity of bacterial microflora. This, in turn, affects the soil&#39;s physicochemical properties and, more specifically, organic carbon dynamics and storage.</p>

opencc-by-4.0Jul 2023View details →
zenodo36/100

Global Datasets of Hourly Carbon and Water Fluxes Simulated Using a Satellite-based Process Model with Dynamic Parameterizations

<p>This new global hourly dataset serves as a &#39;handshake&#39; among process-based models, remote sensing, and the eddy covariance flux network, providing a reliable long-term estimate of global gross primary productivity (GPP) and evapotranspiration (ET) with diurnal patterns and facilitating studies related to ecosystem functional properties, global carbon, and water cycles.</p> <p>The dataset include the GPP and ET of sunlit and shaded leaf components at an hourly timescale and a spatial resolution of 0.25-degree from 2001 to 2020.</p>

opencc-by-4.0Aug 2023View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record