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Fig. 3 in Abundance and microhabitat use of the Endangered toad Rhinella yanachaga (Anura: Bufonidae) in the cloud forest of Yanachaga Chemillén National Park, Peru
Fig. 3. Numbers of individuals according to sex and length (SVL) ranges of Rhinella yanachaga in four transects, T1 = 2,800–2,700 m, T2 = 2,700–2,600 m, T3 = 2,600–2,500 m, and T4 = 2,500–2,400 m, according to the elevation gradient in the wet and dry seasons.
Fig. 1 in Abundance and microhabitat use of the Endangered toad Rhinella yanachaga (Anura: Bufonidae) in the cloud forest of Yanachaga Chemillén National Park, Peru
Fig. 1. (A) Map of the study area. The white circle indicates the location of the study site (San Alberto) within Yanachaga-Chemillén National Park, Oxapampa, Pasco; (B) lateral view, (C) ventral view, and (D) dorsal view of Rhinella yanachaga in life. Map by Vladimir Camel (A), photos by Shirley Huamán-Trucios (B–D).
Fig. 5 in Environmental heterogeneity causes differences in the amphibian assemblage structure of an undisturbed montane cloud forest in southern Mexico
Fig. 5. Canonical Correspondence Analysis of the most common amphibians. The arrow orientation and length represent the association, direction, and strength between the environmental variables and the ordination axis. Species names correspond to: Crm (C. matudai), Plm (Pl. matudai), Pls (Pl. sagorum), Pte (Pt. euthysanota), Bof (B. franklini), Boo (B. occidentalis), and Dex (D. xolocalcae) Environmental acronyms correspond to: Hum (Humidity), Understory_Den (Under story density), Le_Li_depth (leaf litter depth), and Temp (temperature).
Fig. 4 in Environmental heterogeneity causes differences in the amphibian assemblage structure of an undisturbed montane cloud forest in southern Mexico
Fig. 4. (a) Principal Component Analysis, grouping the eight sites present in the core zones according to eight environmental variables taken in each site. Blue triangles: TCZ (El Triunfo core zone) sites; pink circles: QCZ (El Quetzal core zone) site. (b) Eight environmental variables measured in the eight sites (four per core zone). Median (solid line), 25th and 75th percentiles (boundaries of boxes), minimum and maximum (lines).
Fig. 1 in Environmental heterogeneity causes differences in the amphibian assemblage structure of an undisturbed montane cloud forest in southern Mexico
Fig. 1. Location of the two sampled zones, El Triunfo core zone [TCZ] (1) and the El Quetzal core zone [QCZ] (3), in the El Triunfo Biosphere Reserve (ETBR), Sierra Madre de Chiapas, Mexico, and illustration of the sample design (core zones, sites, and plots).
Fig. 3 in Environmental heterogeneity causes differences in the amphibian assemblage structure of an undisturbed montane cloud forest in southern Mexico
Fig. 3. (a) Rank-abundance Curves for the El Triunfo core zone [TCZ] and Quetzal core zone [QCZ] in the El Triunfo Biosphere Reserve. Letters on the Rank-abundance Curves correspond to Crm (C. matudai), Crs (C. stuarti), Pll (Pl. lacertosa), Plh (Pl. hartwegii), Plm (Pl. matudai), Pls (Pl. sagorum), Dus (D. schmidtorum), Pte (Pt. euthysanota), Exs (E. sumichrasti), Lim (L. maculatus), Bof (B. franklini), Boo (B. occidentalis), Bofl (B. flavimembris), and Dex (D. xolocalcae). (b) Nonmetric multidimensional scaling of the eight sites within the core zones in the ETBR. Blue triangles: TCZ sites, pink circles: QCZ sites. (c) Dendrogram of functional groups of the El Triunfo core zone amphibian species, using Euclidian Distance, and tested functional groups by ANOSIM are highlighted in different colors (FG1: green; FG2: brown; FG3: blue; FG4: red, and FG5: yellow).
Fig. 2 in Environmental heterogeneity causes differences in the amphibian assemblage structure of an undisturbed montane cloud forest in southern Mexico
Fig. 2. Box plots of amphibian species diversity in the El Triunfo Biosphere Reserve (ETBR), Chiapas, Mexico, showing the median (solid line), 25th and 75th percentiles (boundaries of boxes), and minimum and maximum (lines). (a) Number of individuals, (b) Species richness (0D), (c) Common species (1D), and (d) Dominant species (2D).
Figs. 2–4 in Myrmecofauna (Hymenoptera: Formicidae) response to habitat characteristics of tropical montane cloud forests in central Veracruz, Mexico
Figs. 2–4. Species richness, diversity profiles, and rank–abundance curves. Fig. 2. Comparison of the richness of woody plants at a sampling coverage of 90% and of ants at 85% coverage, among 5 fragments of tropical montane cloud forest in central Veracruz, Mexico. Statistical differences are considered when 95% confidence intervals do not overlap, whereas no differences are assumed when they do overlap, with an α = 0.05. Fig. 3. Diversity profiles of the ant assemblages of F1–F5 based on the equivalent species number. Statistical differences are considered when 95% confidence intervals do not overlap, whereas no differences are assumed when they do overlap, with an α = 0.05. Fig. 4. Rank–abundance curves of the ant assemblages of F1–F5. Total number of ant incidences in each fragment is 60 traps. Only those species with a relative abundance equal to or higher than 10% in a given fragment are shown. Ant species are numbered in accordance with Table 2.
Figs. 5 and 6. Results from cluster and linkage tree analyses. Fig. 5 in Myrmecofauna (Hymenoptera: Formicidae) response to habitat characteristics of tropical montane cloud forests in central Veracruz, Mexico
Figs. 5 and 6. Results from cluster and linkage tree analyses. Fig. 5. Dendrogram of hierarchical standardized clustering based on the SØrensen similarity index of the studied fragments. The cophenetic correlation coefficient of the cluster is 0.89. The dendrogram displays with continuous lines the divisions for which the SIMPROF test rejects the null hypothesis (where assemblages in that group have no further structure to explore) and with dashed lines the groups of assemblages not separated (at P <0.05) by SIMPROF. Fig. 6. Linkage tree analysis (LINKTREE) showing divisive clustering of fragments (F1–F5) from species compositions constrained by inequalities on one or more environmental variables. Only binary partitions of uncorrelated environmental variables are shown in the cluster. The dendrogram displays with continuous lines the divisions for which the SIMPROF test rejects the null hypothesis (where assemblages in that group have no further structure to explore) and with dashed lines the groups of assemblages not separated (at P <0.05) by SIMPROF.
Fig. 1 in Myrmecofauna (Hymenoptera: Formicidae) response to habitat characteristics of tropical montane cloud forests in central Veracruz, Mexico
Fig. 1. Location of the study area in central Veracruz, Mexico. The black polygons indicate the selected fragments (F1–F5) of tropical montane cloud forest.
Terrestrial Lidar Point Cloud Data for: Evaporation and condensation dynamics within saturated epiphyte communities in a Quercus virginiana forest
<p><span>Terrestrial lidar scans were captured using a BLK360 scanner (Leica Geosystems, Norcross, GA, USA) which has a range of 0.5 – 45 m and measurement rate up to 680,000 points s<sup>−1</sup> at the high-resolution setting. A georeferenced, 3-D point cloud of the study site was generated from 12 scans, approximately 50 m apart in both horizontal directions. Scans were performed in orientations intended to maximize branch exposure to the scanner and to scan during optimal weather conditions to minimize occlusion of features due to noise or movement generated by wind. Scan co-registration was done in Leica Geosystem’s Cyclone Register 360 software using its Visual Simultaneous Localization and Mapping algorithm (Visual SLAM) and resulted in relatively low overall co-registration error ranging from 0.005-0.009 m. From this study site point cloud, manual straight-line measurements from the ground to the sensors were made using Leica’s Cyclone Register 360 software.</span></p>
Linked collectors and determiners for: Two new species of Megarthrus (Coleoptera, Staphylinidae, Proteininae) from Mexican Cloud Forests.
Natural history specimen data linked to collectors and determiners held within, "Two new species of Megarthrus (Coleoptera, Staphylinidae, Proteininae) from Mexican Cloud Forests". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/db595c03-4859-4d5b-94f6-f9d73a40db69">https://bionomia.net/dataset/db595c03-4859-4d5b-94f6-f9d73a40db69</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/db595c03-4859-4d5b-94f6-f9d73a40db69">https://gbif.org/dataset/db595c03-4859-4d5b-94f6-f9d73a40db69</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: The Trichoptera of Panama. VI. Seven new species of microcaddisflies (Insecta: Trichoptera: Hydroptilidae) from Mount Totumas Cloud Forest and Biological Reserve.
Natural history specimen data linked to collectors and determiners held within, "The Trichoptera of Panama. VI. Seven new species of microcaddisflies (Insecta: Trichoptera: Hydroptilidae) from Mount Totumas Cloud Forest and Biological Reserve". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/bda85876-5e1a-46a4-83ac-bb42fd72b390">https://bionomia.net/dataset/bda85876-5e1a-46a4-83ac-bb42fd72b390</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/bda85876-5e1a-46a4-83ac-bb42fd72b390">https://gbif.org/dataset/bda85876-5e1a-46a4-83ac-bb42fd72b390</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Anticyphon gen. nov., a new genus of Scirtidae (Coleoptera: Scirtoidea) inhabiting high altitude Andean cloud forests and páramo formation.
Natural history specimen data linked to collectors and determiners held within, "Anticyphon gen. nov., a new genus of Scirtidae (Coleoptera: Scirtoidea) inhabiting high altitude Andean cloud forests and páramo formation". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/55c6a2a3-cf2b-41df-bb10-ee4ba1d423c3">https://bionomia.net/dataset/55c6a2a3-cf2b-41df-bb10-ee4ba1d423c3</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/55c6a2a3-cf2b-41df-bb10-ee4ba1d423c3">https://gbif.org/dataset/55c6a2a3-cf2b-41df-bb10-ee4ba1d423c3</a>. Formatted as a Frictionless Data package.
Seasonal rainfall in subtropical montane cloud forests drives demographic fluctuations in a Green-backed Tit population
<p>Montane birds are vulnerable to climate change. However, the mechanisms by which weather drives demographic processes in montane birds have seldom been investigated. We conducted a long-term study (2009–2019) on the Green-backed Tit (<em>Parus monticolus)</em>, an insectivorous passerine, in the montane cloud forest of subtropical Taiwan. We explored the effects of weather variability on the productivity and survival of adult Green-backed Tits. Nest survival was negatively associated with seasonal rainfall during the breeding season (April–July) and was lower in early clutches than in late clutches. Higher typhoon-induced precipitation during the postbreeding period (July–September) was related to reduced adult survival, but neither summer temperature nor winter weather conditions were found to be related to adult bird survival. We developed a stochastic simulation model for Green-backed Tit population dynamics based on empirical data. We compared the simulated time-series and observed population growth rates (λ) and found that 80% (8/10 yr) of the observed λ fell within the 5th and 95th percentiles of the simulated data over the 10-yr period. Moreover, the simulated average (± standard deviation) of the geometric mean of λ over 10 yr (1.05 ± 0.07) was close to that observed from 2009–2019 (0.99), which provided confidence that the model effectively simulated the population growth rate of the Green-backed Tit. We conducted a sensitivity analysis for λ, and found that juvenile and adult survival influenced by typhoon-induced rainfall were the greatest contributors to the variance in the growth rate of the Green-backed Tit population. With the onset of intensified seasonal precipitation associated with global warming, the population growth and density of Green-backed Tits will decline substantially. Our results suggest that under scenarios of high emissions of greenhouse gas, this local population of Green-backed Tits will not persist in the near future.</p>
Figure 7 in Two new species of Phyllophaga of the Schizorhina species group from cloud forests of Chiapas, México and Guatemala (Coleoptera: Scarabaeidae: Melolonthinae)
Figure 7. Genital capsule of species of Phyllophaga of Schizorhina subgroup 2, from Chiapas, México and Guatemala. A) P. acacoyahuana, dorsolateral view. B) P. alvareztoroi, dorsal view, redrawn from Morón and Blas (2006). C) P. ginigra, lateral view. D) P. javepacuana, lateral view. Arrows indicate the finger-like dorsal projections of phallobase (sensu Morón 2003: 231).
Figure 6 in Two new species of Phyllophaga of the Schizorhina species group from cloud forests of Chiapas, México and Guatemala (Coleoptera: Scarabaeidae: Melolonthinae)
Figure 6. Genital capsule of holotype of Phyllophaga sechi, n. sp. A) Lateral view. B) Distal view. C. Ventral view. Arrows indicate the finger-like dorsal projections of phallobase (sensu Morón 2003: 231).
Figure 4 in Two new species of Phyllophaga of the Schizorhina species group from cloud forests of Chiapas, México and Guatemala (Coleoptera: Scarabaeidae: Melolonthinae)
Figure 4. Collecting localities of the new species. Circles: Phyllophaga badbunnyi n. sp. Cano. Square: Phyllophaga sechi n. sp. Cano.
Figure 3 in Two new species of Phyllophaga of the Schizorhina species group from cloud forests of Chiapas, México and Guatemala (Coleoptera: Scarabaeidae: Melolonthinae)
Figure 3. Genital plates of Phyllophaga badbunnyi, n. sp. A) Superior and lateral plates. B) Inferior plates (the right broken).
Figure 2 in Two new species of Phyllophaga of the Schizorhina species group from cloud forests of Chiapas, México and Guatemala (Coleoptera: Scarabaeidae: Melolonthinae)
Figure 2. Genital capsule of Phyllophaga badbunnyi, n. sp. A) Lateral view. B) Dorsal view. C) Lateral view of aedeagus. Arrows indicate the finger-like dorsal projections of phallobase (sensu Morón 2003: 231).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.