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86 results for “cytochrome b”
Fig. 4 in Variation in the Karyotype, Cytochrome b Gene, and 5S rDNA of Four Thunnus (Perciformes, Scombridae) Tunas
Fig. 4. (a) Neighbor-joining and (b) Maximum-likelihood trees constructed using 5S ribosomal DNA sequences from 4 Thunnus species and the outgroup, Scomber scombrus. NBT: T. orientalis, YFT: T. albacares, BET: T. obesus, LFT: T. alalunga. ◎indicates two subgroups of T. obesus.
Fig. 3 in Variation in the Karyotype, Cytochrome b Gene, and 5S rDNA of Four Thunnus (Perciformes, Scombridae) Tunas
Fig. 3. (a) Neighbor-joining and (b) Maximum-likelihood trees constructed with 17 cytochrome (Cyt) b gene sequences from 8 Thunnus species and the outgroup, Katsuwonus pelamis. NBT: T. orientalis, YFT: T. albacares, BET: T. obesus, LFT: T. alalunga.
Fig. 1 in Variation in the Karyotype, Cytochrome b Gene, and 5S rDNA of Four Thunnus (Perciformes, Scombridae) Tunas
Fig. 1. Sampling locations (ellipse) of Thunnus obesus, T. albacares, T. alalunga, and T. orientalis in Taiwanese waters.
Fig. 2 Median joining network for the seven cytochrome b in Ecomorphology of a generalist freshwater gastropod: complex relations of shell morphology, habitat, and fecundity
Fig. 2 Median joining network for the seven cytochrome b haplotypes found in 979 New Zealand Potamopyrgus antipodarum and sampling sites. Each branch represents a single nucleotide substitution and short transversal lines as well as small black circles unsampled haplotypes. Size of circles is proportional to number of individuals per haplotype
Table 2. Genetic distances for mitochondrial DNA partial cytochrome c oxidase subunit I and cytochrome b in Molecular phylogeny of the Aplodactylidae (Perciformes: Cirrhitoidea), a group of Southern Hemisphere marine ® shes
<p>Table 2. Genetic distances for mitochondrial DNA partial cytochrome <i>c</i> oxidase subunit I and cytochrome <i>b</i> sequences when combined. Values are Kimura (1980) two-parameter percentage sequence divergences, obtained when using the optimum expected transition±transversion nucleotide substitution ratio of 3.0 from maximum likelihood analysis (fi gure 3).</p><table><tbody><tr><th></th><th></th><th>1</th><th>2</th><th>3</th><th>4</th><th>5</th><th>6</th><th>7</th></tr></tbody><tbody><tr><th>1</th><td><i>Aplodactylus arctidens</i></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th>2</th><td><i>Aplodactylus punctatus</i></td><td>6.1</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th>3</th><td><i>Aplodactylus westralis</i></td><td>7.8</td><td>7.6</td><td></td><td></td><td></td><td></td><td></td></tr><tr><th>4</th><td><i>Aplodactylus etheridgii</i></td><td>10.0</td><td>10.3</td><td>10.0</td><td></td><td></td><td></td><td></td></tr><tr><th>5</th><td><i>Aplodactylus lophodon</i></td><td>11.8</td><td>11.9</td><td>12.4</td><td>11.1</td><td></td><td></td><td></td></tr><tr><th>6</th><td><i>Chironemus marmoratus</i></td><td>20.0</td><td>18.7</td><td>18.3</td><td>19.3</td><td>19.5</td><td></td><td></td></tr><tr><th>7</th><td><i>Cheilodactylus fasciatus</i></td><td>21.8</td><td>21.0</td><td>20.5</td><td>22.6</td><td>20.2</td><td>21.2</td><td></td></tr><tr><th>8</th><td><i>Cirrhitus splendens</i></td><td>22.6</td><td>20.7</td><td>21.0</td><td>23.1</td><td>22.0</td><td>23.1</td><td>22.8</td></tr></tbody></table>
FIGURE 3 in Comparison of mitochondrial cytochrome b lineages and morphospecies of two avian malaria parasites of the subgenera Haemamoeba and Giovannolaia (Haemosporida: Plasmodiidae)
FIGURE 3. Plasmodium circumflexum (lineage P-TURDUS1) from the blood of House Sparrow Passer domesticus. a– c —trophozoites; d–j —erythrocytic meronts; k–n —macrogametocytes; o, p —microgametocytes. Scale bar = 10 µm.
FIGURE 2 in Comparison of mitochondrial cytochrome b lineages and morphospecies of two avian malaria parasites of the subgenera Haemamoeba and Giovannolaia (Haemosporida: Plasmodiidae)
FIGURE 2. Plasmodium relictum (lineage P-SGS1) from the blood of Common Crossbill Loxia curvirostra. a, b—trophozoites; c–h — erythrocytic meronts; i–m — macrogametocytes; n–p — microgametocytes. Scale bar = 10 µm.
FIGURE 1 in Comparison of mitochondrial cytochrome b lineages and morphospecies of two avian malaria parasites of the subgenera Haemamoeba and Giovannolaia (Haemosporida: Plasmodiidae)
FIGURE 1. Neighbour-joining (NJ) tree of 32 lineages of Plasmodium spp. and five lineages of Haemoproteus spp. as the outgroup. The NJ tree was constructed using the Kimura 2-parameter distance matrix with bootstrap resampling (1,000 times). Bootstrap values are represented by circles (>90%), squares (70–89%), and triangles (50–69%). Closely related (within a genetic distance 2.5%) to Plasmodium relictum, Plasmodium circumflexum, and Plasmodium ashfordi lineages of malaria parasites are marked by bars a, b and c, respectively. GenBank accession numbers of sequences are given after lineage names in parentheses.
FIGURE 3. The Neighbor-Joining tree for the cytochrome b in Mitochondrial diversity of the white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in Vietnam
FIGURE 3. The Neighbor-Joining tree for the cytochrome b (cytb) gene fragment. Designations as on the Fig. 2. Suncus murinus and S. stoliczkanus are used as outgroup.
FIGURE 3. Phylogenetic relationships among combined cytochrome b and 16S in First record of Hylomyscus walterverheyeni (Rodentia: Muridae) on the north-western side of the Sanaga River (western Cameroon)
FIGURE 3. Phylogenetic relationships among combined cytochrome b and 16S gene sequences of Hylomyscus inferred from a Bayesian Markov-chain Monte Carlo analysis. Values above branches indicate bootstrap supports obtained from distance and parsimony methods (NJ, MP) and Bayesian posterior probabilities. Hylomyscus waterverheyeni specimens are preceded by the locality code used in Fig. 1. For undescribed taxa, we followed Nicolas et al. (2006).
FIGURE 2. Phylogenetic relationships among cytochrome b in First record of Hylomyscus walterverheyeni (Rodentia: Muridae) on the north-western side of the Sanaga River (western Cameroon)
FIGURE 2. Phylogenetic relationships among cytochrome b gene sequences of 111 specimens of Hylomyscus inferred from the NJ analysis. The numbers above branches indicate bootstrap scores (1,000 replicates). For locality name abbreviations, see Table 1. H. waterverheyeni specimens are preceded by the locality code used in Fig. 1. For undescribed taxa, we followed Nicolas et al. (2006).
Figure 3. Maximum likelihood topologies. A, cytochrome oxidase 1 fragments. B, internal transcribed spacer fragment. C, combined data set. Bootstrap supports over 75 in Integrative taxonomy of Parasabella and Sabellomma (Sabellidae: Annelida) from Australia: description of new species, indication of cryptic diversity, and translocation of some species out of their natural distribution range
Figure 3. Maximum likelihood topologies. A, cytochrome oxidase 1 fragments. B, internal transcribed spacer fragment. C, combined data set. Bootstrap supports over 75% shown on nodes. Scale bar, average of nucleotide substitutions per site.
FIGURE 7. Majority consensus Bayesian tree generated from partial cytochrome b in Description of a new species of the Miniopterus aelleni group (Chiroptera: Miniopteridae) from upland areas of central and northern Madagascar
FIGURE 7. Majority consensus Bayesian tree generated from partial cytochrome b sequence (725 bp), illustrating phylogenetic position of Miniopterus ambohitrensis sp. nov. Values at nodes represent Bayesian posterior probability followed by maximum likelihood (ML) bootstrap support. An asterisk (*) indicates that the node was fully supported in both the Bayesian and ML analyses, i.e., posterior probability 0.95 or greater and a bootstrap support value 85 or greater. The first value at the node is the posterior probability (Bayesian); the second is the bootstrap value derived from the maximum likelihood analysis (ML). The Bayesian analysis was run using MrBayes 3.2 (Huelsenbeck & Ronquist 2001; Ronquist et al. 2012) for 2,000,000 generations. The ML analysis was run using Garli 2.01 (Zwickl 2006) with bootstrap replicates set to 1,000. The nucleotide substitution model HKY was applied. Specimens obtained from type specimens are indicated by bolding and shading.
Fig. 4.—A Bayesian cytochrome b in A precarious future for distinctive peripheral populations of meadow voles (Microtus pennsylvanicus)
Fig. 4.—A Bayesian cytochrome b (Cytb) gene tree for 50 individuals of Microtus pennsylvanicus. Colors correspond to Cytb clades depicted in Fig. 2. Posterior probability of> 0.95 are denoted by an asterisk. Four species of Microtus were used as outgroups and are shown in black (M. longicaudus, M. townsendii, M. canicaudus, and M. montanus).
Fig. 3.—A Bayesian cytochrome b in A precarious future for distinctive peripheral populations of meadow voles (Microtus pennsylvanicus)
Fig. 3.—A Bayesian cytochrome b (Cytb) gene tree for 63 species of Microtus. Posterior probability of> 0.95 are depicted by asterisk. The inset shows M. breweri nested within M. pennsylvanicus. Two species of Chionomys were used as outgroups and are shown at the bottom of the tree (C. roberti and C. nivalis).
FIGURE 3. Maximum-Likelihood cytochrome b in A new lizard species of the Liolaemus kingii group (Squamata: Liolaemidae) from northwestern Chubut province (Argentina)
FIGURE 3. Maximum-Likelihood cytochrome b genealogy showing results of single-locus species delimitations. Circles on nodes indicate ultrafast bootstrap supports (black ≥ 95, gray ≥ 80 and ≤ 95, and white ≤ 80).
Figure 5 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 5: Maximum likelihood tree of Suncus cytb sequences. Phylogenetic relationships inferred from a matrix of 1,140 nucleotide positions for 36 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S6.
Figure 4 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 4: Maximum likelihood tree of Crocidura suaveolens complex cytb sequences. Phylogenetic relationships inferred from a matrix of 996 nucleotide positions for 215 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S5.
Figure 3 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 3: Maximum likelihood tree of Crocidura leucodon cytb sequences. Phylogenetic relationships inferred from a matrix of 1,077 nucleotide positions for 63 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S4.
Figure 2 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 2: Maximum likelihood tree of Crocidura cytb sequences with emphasis on the Asian and Old World species. Phylogenetic relationships inferred from a matrix of 1,128 nucleotide positions for 131 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S3.
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