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59
datasets available to search
ShareScore release 0.9.0
Dataset results
59 results for “depth profile”
High-Depth Transcriptomic Profiling Reveals the Temporal Gene Signature of Mesenchymal Stem Cells During Chondrogenesis
GEO Series GSE109503. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Analysis of the RDR6-dependent small RNA profile in ein5 ski2 in Arabidopsis with biological replications and increased sequencing depth
GEO Series GSE57936. Arabidopsis thaliana. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.
In-depth molecular profiling specifies human retinal microglia identity
GEO Series GSE193161. Homo sapiens. 48 samples. Type: Expression profiling by high throughput sequencing.
In-depth profiling of transcriptional activity of Aire in mouse mTECs
GEO Series GSE222285. Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing.
High-Resolution Molecular Profiling of Epileptic Brain Activity via Explanted Depth Electrodes [RNA-seq]
GEO Series GSE268714. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
High-Resolution Molecular Profiling of Epileptic Brain Activity via Explanted Depth Electrodes [Methylation]
GEO Series GSE268715. Homo sapiens. 24 samples. Type: Methylation profiling by high throughput sequencing.
Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose
GEO Series GSE46323. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
A collection of read depth profiles at structural variant breakpoints
<p><strong>SWaveform is a newly created open genome-wide resource for read depth signal in the vicinity of structural variant (SV) breakpoints aims to boost development of computational tools and new algorithms for discovery of genomic rearrangement events from long- or short read sequencing data. SVs encompassing insertions, deletions, duplications, inversions and translocations are a dominant force shaping genomes and substantially contributing to genetic diversity. Still, there are challenges in reliable and efficient genotyping of SVs from whole genome sequencing data, thus delaying translation into clinical applications, and wasting valuable resources. SWaveform includes a database containing ~15M of read depth profiles at SV breakpoints extracted from 911 sequencing samples generated by the Human Genome Diversity Project, generalised patterns of the signal at breakpoints and an interface to navigate and download the data. The data set can be of immense value to bioinformatics and engineering communities as it empowers smooth application of intelligent signal processing and machine learning techniques for discovery of genomic rearrangement events and thus opens the floodgates for development of innovative algorithms and software.</strong></p>
Establishment and Standardization of a Platform for In-depth Tumour Profiling (TUPRO) in Patients With Advanced and Metastatic High-Grade Adenocarcinoma of Ovarian, Tubal or Peritoneal Origin (TUPRO-G
ClinicalTrials.gov study NCT06599749. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat, at different sequencing depths (RNA-Seq)
GEO Series GSE53762. Rattus norvegicus. 18 samples. Type: Expression profiling by high throughput sequencing.
Whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat, at different sequencing depths
GEO Series GSE53861. Rattus norvegicus. 30 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
Whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat, at different sequencing depths (Affymetrix transcript-level)
GEO Series GSE53764. Rattus norvegicus. 6 samples. Type: Expression profiling by array.
Whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat, at different sequencing depths (Affymetrix exon-level)
GEO Series GSE53860. Rattus norvegicus. 6 samples. Type: Expression profiling by array.
Differential expression of human BM-MSCs RNA-Seq and 21-day of chondrogenic differentiation from high-depth transcriptomic profiling of mesenchymal stem cells during chondrogenesis
GEO Series GSE225530. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]
GEO Series GSE198250. Rattus norvegicus; Mus musculus; Homo sapiens. 188 samples. Type: Expression profiling by high throughput sequencing; Other.
Observed fluxes of POC, PIC and bSi at EqPac, HAUSGARTEN, OSP, PAP-SO and BATS/OFP from sediment traps and radioisotopes on depth profiles
<p>This dataset contains a compilation of observed fluxes of sinking particulate material (particulate organic carbon or POC, particulate inorganic carbon or PIC, and biogenic silica or bSi) at five ocean time-series sites obtained from sediment traps and radioisotopes. The five time-series sites were selected upon abundance of data on a monthly and depth basis. The sites are:</p> <ol> <li>Equatorial Pacific Process Studi (EqPac) in the upwelling region of the equatorial Pacific</li> <li>Long-Term Ecological Research observatory HAUSGARTEN, in the eastern Fram Strait, off Svalbard, at the Atlantic-Arctic boundary.</li> <li>Ocean Station Papa (OSP), in the southern portion of the Alaska Gyre in the NE subarctic Pacific</li> <li>Porcupine Abyssal Plain time-Series Observatory (PAP-SO), in the NE Atlantic off the SW of the UK</li> <li>Bermuda Atlantic Time-Series/Oceanic Flux Program joint site (BATS/OFP), in the northern Sargasso Sea, in the subtropical NW Atlantic </li> </ol> <p>The compilation contains a total of 7013 data points, where BATS/OFP accumulates 50% of all of them, followed by OSP (28%), HAUSGARTEN (10%), PAP-SO (10%) and EqPac (2%). The bulk of the collected data is in the euphotic zone and POC flux has a higher count than PIC and bSi. The origin of the 98% of the data is sediment traps, the remaining 2% (157 data points) are surface fluxes derived from radioisotopes.</p>
High depth profiling of miRNA targets with chimeric eCLIP
GEO Series GSE198251. Rattus norvegicus; Mus musculus; Homo sapiens. 204 samples. Type: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
High depth profiling of miRNA targets with chimeric eCLIP [small RNA-seq]
GEO Series GSE196460. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
High depth profiling of miRNA targets with chimeric eCLIP [RNA-seq]
GEO Series GSE197483. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.