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986 results for “exchangeability”

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zenodo44/100

Data from: Selectivity of Guanine Nucleotide Exchange Factor-mediated Cdc42 activation in primary human endothelial cells

<p>Data that was reported in &quot;Selectivity of Guanine Nucleotide Exchange Factor-mediated Cdc42 activation in primary human endothelial cells&quot; by&nbsp;</p> <p>Nathalie R. Reinhard<sup>1</sup>, Sanne van der Niet<sup>1</sup>, Anna Chertkova<sup>1</sup>, Marten Postma<sup>1</sup>, Theodorus W.J. Gadella Jr.<sup>1</sup>, Peter L. Hordijk<sup>1,2</sup>, and Joachim Goedhart<sup>1*</sup><br> &nbsp;</p> <p><strong>Affiliations:</strong></p> <p><sup>1&nbsp;</sup>University of Amsterdam, Molecular Cytology, Swammerdam Institute for Life Sciences, van Leeuwenhoek Centre for Advanced Microscopy, Amsterdam, the Netherlands</p> <p><sup>2&nbsp;</sup>Department of Physiology, Free University Medical Center, Amsterdam, The Netherlands</p> <p>&nbsp;</p> <p>*Correspondence to: j.goedhart@uva.nl</p>

opencc-by-4.0Jan 2019View details →
zenodo44/100

The PIRATE: an anthropometric earPlug with exchangeable microphones for Individual Reliable Acquisition of Transfer functions at the Ear canal entrance

<p>We present the open design of the PIRATE, an anthropometric earPlug with exchangable microphones for Individual Reliable Acquisition of Transfer functions at the Ear canal entrance. Its outer shape is available in 5 sizes and provides a deep, tight and reproducible fit in virtually all human ears. The design includes a recess to accommodate a MEMS microphone. Thus, the same microphone can be conveniently used in different earplugs without losing accuracy, and the microphone can be removed for calibration. The PIRATE or previous versions of it have been utilized in several studies with more than 200 subjects</p> <p>From the provided model, the earplugs can be 3D printed, and only minor working steps are necessary before use. These steps are described in the documentation.</p> <p>&nbsp;</p> <p>Reference:</p> <p>Denk F., Brinkmann F., Stirnemann S., Kollmeier B. (2019) &quot;The PIRATE: an anthropometric earPlug with exchangeable microphones for Individual Reliable Acquisition of Transfer functions at the Ear canal entrance,&quot; Fortschritte der Akustik - DAGA, Rostock, Germany</p>

opencc-by-sa-4.0Mar 2019View details →
zenodo44/100

A dataset on ion-exchange membrane fouling by humic acid during electrodialysis

<p>This dataset decribes the effect of process setting on the fouling of an electrodialysis pilot installation treating a sodium chloride solution in the presence of humic acid in a series of 22 experiments. The electrical resistance over the electrodialysis stack was monitored in time while varying the crossflow velocity in the compartments, the current applied and the salt concentration in the processed. The active cycle was maintained for a maximum of 1.5h after which the polarity was reversed to remove the fouling layer. In the pilot, additional data is included such as the temperature, pH, flow rate, conductivity, pressure in the different compartments of the ED stack.</p>

opencc-by-4.0Nov 2019View details →
zenodo44/100

Nonlocal machine-learned exchange functional for molecules and solids

<p>This dataset supplements the journal article "Nonlocal machine-learned exchange functional for molecules and solids," published in Physical Review B: <a href="https://doi.org/10.1103/PhysRevB.110.075130">DOI:10.1103/PhysRevB.110.075130</a>. It contains the machine-learned functionals developed in the study (which can be used with the <a href="https://github.com/mir-group/CiderPressLite">CiderPressLite code</a>), along with additional data and results from the study.</p> <p>Please see the README.md file for more details on the dataset, and refer to the original paper for details on methodology and funding acknowledgments.</p>

opencc-by-4.0Aug 2024View details →
zenodo44/100

Ultrasensitive detection of cancer-associated nucleic acids and mutations by primer exchange reaction-based signal amplification and flow cytometry

<p>This dataset contains the raw data that were used for the publication entitled, "Ultrasensitive detection of cancer-associated nucleic acids and mutations by primer exchange reaction-based signal amplificaiton and flow cytometry" published in Biosensors and Bioelectronics on 5 October 2024.</p>

opencc-by-4.0Oct 2024View details →
zenodo44/100

Plasmodesmata Act as Unconventional Membrane Contact Sites Regulating Inter-Cellular Molecular Exchange in Plants.

<p>This table contains peaks aera values from LC-MS for lipidomic quantification of PIP and PIP2. These data were used for P&eacute;rez-Sancho, Jessica and Smokvarska, Marija and Glavier, Marie and Sritharan, Sujith and Dubois, Gwennogan and Dietrich, Victor and Platre, Matthieu and Li, Ziqiang Patrick and Paterlini, Andrea and Moreau, Hortense and Fouillen, Laetitia and Grison, Magali S. and Cana-Quijada, Pepe and Moraes, Tatiana Sousa and Immel, Fran&ccedil;oise and Wattelet, Valerie and Ducros, Mathieu and Brocard, Lysiane and Chambaud, Cl&eacute;ment and Zabrady, Matej and Luo, Yongming and Busch, Wolfgang and Tilsner, Jens and Helariutta, Yrj&ouml; and Russinova, Jenny and Taly, Antoine and Jaillais, Yvon and Bayer, Emmanuelle, Plasmodesmata Act as Unconventional Membrane Contact Sites Regulating Inter-Cellular Molecular Exchange in Plants.&nbsp;</p>

opencc-by-4.0Oct 2024View details →
zenodo44/100

Magnetic coupling of divalent metal centers in postsynthetic metal exchanged bimetallic DUT-49 MOFs by EPR spectroscopy

<ul> <li><strong>Data type</strong>: Experimental spectroscopic measurements, computer simulation and analysis</li> <li>Files are with filename extensions: <strong>DSC</strong>, <strong>DAT</strong>, <strong>m</strong>, <strong>txt</strong></li> <li>Information on <strong>origin of the data</strong>:</li> </ul> <ul> <li>EPR spectroscopic measurements with filename extensions <strong>DSC</strong>, <strong>DTA.</strong></li> <li>EPR spectroscopic simulation and analyses with filename extension <strong>m</strong>.</li> <li>EPR spectra are exported as <strong>txt</strong> files in ASCII format.</li> </ul> <ul> <li>X-band CW-EPR spectroscopic measurements were generated by EMX spectrometer equipped with SHQ cavity produced by Bruker.</li> <li><strong>If the dataset includes multiple files that relate to each other:</strong> <ul> <li>Files in <strong>PARACAT_WP4_20201111_ULEI_21_DUT49Mn@7K </strong>folder includes X-band CW-EPR spectroscopic measurements; original data are in DTA/DSC and txt formats.</li> <li>Files in <strong>PARACAT_WP4_20201111_ULEI_00_DUT49Mn@simulation </strong>folder includes computer simulations/analyses of the EPR measurements; data are in m and txt formats.</li> </ul> </li> <li><strong>Information on</strong>: <ul> <li>specialized abbreviations: <strong>DUT49Cu &ndash; </strong>DUT-49(Cu) MOF, <strong>DUT49Mn &ndash; </strong>DUT-49(Mn) MOF, <strong>DUT49CuZn &ndash; </strong>DUT-49(CuZn) MOF, <strong>DUT49MnCu &ndash; </strong>DUT-49(MnCu) MOF.</li> <li>@10K &ndash; measured at 10 K</li> <li>definitions of variables: <strong>Magnetic field, Temperature.</strong></li> </ul> </li> </ul> <p>units of measurement: <strong>Gauss (G), K, degree (&deg;), milliTesla (mT)</strong>.</p>

opencc-by-4.0Mar 2023View details →
zenodo44/100

Global net ecosystem exchange of CO2 inferred from the OCO-2 XCO2 retrievals (GCAS OCO-2 inversion)

<p>Here is a dataset of&nbsp;global carbon flux estimates over 2015-2019&nbsp;using the OCO-2 column-averaged dry-air mole fraction (XCO<sub>2</sub>) retrievals (ACOS XCO<sub>2</sub>&nbsp;v10) by the global carbon assimilation system (GCAS v2)&nbsp;(Jiang et al., 2021).&nbsp;</p> <p>&nbsp;</p> <p><strong>Citations:</strong></p> <p>Jiang, F. et al., 2021. Regional CO2 fluxes from 2010 to 2015 inferred from GOSAT XCO2 retrievals using a new version of the Global Carbon Assimilation System. Atmos. Chem. Phys., 21(3): 1963-1985.</p> <p>Jiang, F. et al., 2022. A 10-year global monthly averaged terrestrial net ecosystem exchange dataset inferred from the ACOS GOSAT v9 XCO2 retrievals (GCAS2021), Earth Syst. Sci. Data., 14, 3013&ndash;3037.</p> <p>He, W., Jiang, F., Ju, W., et al.&nbsp;Improved&nbsp;constraints on the recent&nbsp;terrestrial carbon sink over&nbsp;China&nbsp;by assimilating OCO-2 XCO<sub>2&nbsp;</sub>retrievals, JGR-Atmopsheres, 2022,&nbsp;under review.</p> <p><strong>Contacts: </strong></p> <p>Wei He (weihe@nju.edu.cn); Fei Jiang (jiangf@nju.edu.cn)</p> <p>Note: &nbsp;<strong>If you want to use this dataset for your researches, please contact us in advances. </strong>Thank you!</p>

opencc-by-4.0Aug 2022View details →
zenodo44/100

DNA-HDXMS_XchangeDB: A dataset of Hydrogen-Deuterium eXchange native Mass Spectrometry experiments on DNA oligonucleotides

<p>The DNA-HDXMS_XchangeDB dataset contains HDX/native MS exchange kinetics and metadata of a reference set of DNA oligonucleotides.</p> <p>&nbsp;</p>

opencc-by-4.0Mar 2023View details →
zenodo44/100

Raw data from Cao et al. (2023) "Electron exchange capacity of pyrogenic dissolved organic matter (DOM): Complementarity of square-wave voltammetry in DMSO and mediated chronoamperometry in water"

<p>Measured and fitted data from square-wave voltammetry (SWV) in DMSO for electron exchange capacities (EECs) of pyrogenic natural organic matter (pyDOM) and natural organic matter (NOM) standards.&nbsp;</p> <p>From Cao, H., A. S. Pavitt, J. M. Hudson, P. G. Tratnyek, and W. Xu. 2023. Electron exchange capacity of pyrogenic dissolved organic matter (DOM): Complementarity of square-wave voltammetry in DMSO and mediated chronoamperometry in water.&nbsp;Environ. Sci. Proc. Impacts: ASAP. [10.1039/d3em00009e]</p> <p>The manuscript reports electron accepting capacity (EAC), electron donating capacity (EDC), and electron exchange capacities (EECs) measured with a new method involving square-wave voltammetry in an aprotic solvent (dimethyl sulfoxide, DMSO). The measurement method, fitting of peak areas, and conversion of peak areas to EECs are described in the main text and supporting information of the manuscript.</p> <p>Here we provide the original measured data, baseline corrected data used in the peak fitting, and fitted peak area data that were used to obtain the final EEC values. The data are provided in one .xlsx file that contains multiple tabs: (i) a table of contents, (ii) a summary of the final fitting results, and (iii) tabs numbered R1-R40 containing raw measured data for each pyDOM/NOM sample.</p> <p>The data provided here should be sufficient to replicate and verify all of the analysis described in the manuscript. If you use these data, please cite this Zenodo record (DOI 10.5281/zenodo.7747020) and the original manuscript (DOI: 10.1039/d3em00009e).</p>

opencc-by-4.0Mar 2023View details →
zenodo44/100

Data from: Oxygen limited thermal tolerance is seen in a plastron breathing insect, and can be induced in a bimodal gas exchanger

<p>Dataset on respiration and ctmax in two freshwater bugs, associated with the paper:<br> <strong>Verberk WCEP &amp; Bilton DT (2015)&nbsp;</strong>Oxygen limited thermal tolerance is seen in a plastron breathing insect, and can be induced in a bimodal gas exchanger.&nbsp;<em>Journal of Experimental Biology&nbsp;</em>218: 2083-2088. doi: 10.1242/jeb.119560</p>

opencc-by-4.0Mar 2023View details →
zenodo44/100

Data and code for "Phase transitions in inorganic halide perovskites from machine learning potentials: The impact of size, rate, and the underlying exchange-correlation functional"

<p>This record contains databases with data from density functional theory calculations used for training a series of neuroevolution potentials (NEPs), which are also included here. Information is also included for how to access the databases and run the NEP models.</p> <p><strong>Databases</strong><br> The <code>*.db</code> files are databases with the results from density functional theory (DFT) calculations. These are sqlite databases in ase format, see <a href="https://wiki.fysik.dtu.dk/ase/tutorials/tut06_database/database.html">here</a> for more information. The <code>demo-database-access.py</code> script illustrates the most basic access.</p> <p><strong>Models</strong><br> The neuroevolution potential (NEP) models described in the publication can be found in the <code>nep-*.txt</code> files. They can be used in conjunction with the <a href="https://gpumd.org">GPUMD package</a>. The <a href="https://calorine.materialsmodeling.org">calorine package</a> provides a Python interface to GPUMD.</p> <p><strong>Primitive structures</strong><br> Several primitive structures in extended xyz format can be found in the <code>*.xyz</code> files. These structures have been relaxed using the NEP models included here. The <code>demo-for-using-structures-and-models.py</code> script illustrates how to access the structures and models.</p>

opencc-by-4.0Dec 2022View details →
zenodo44/100

Dataset - What are the Machine Learning best practices reported by practitioners on Stack Exchange?

<p>The data correspond to the posts (questions and answers) retrieved by querying for posts related to the tag &#39;machine learning&#39; and the phrase &#39;best practice(s).&#39; The data were used as the basis for a study currently under review on discussing machine learning best practices as discussed by practitioners in question-and-answer communities such as Stack Exchange. The information from each type of post (i.e., questions and answers) is presented in multiple formats (i.e., .txt, .csv, and .xlsx).</p> <p>&nbsp;</p> <p><strong>Answers - Variables</strong></p> <ul> <li><strong>AID</strong>:<strong>&nbsp;</strong>&nbsp;Unique identification of the answer in the Q&amp;A website.</li> <li><strong>ParentId</strong>: Unique identification of the question associated with the answer in the Q&amp;A website&nbsp;</li> <li><strong>AcceptedAnswerId</strong>&nbsp;: In the case in which an answer is the most voted question associated with the&nbsp;<em>ParentId</em>, and it is different from the accepted answer, a different identifier from the&nbsp;<em>AID</em>&nbsp;is available. In the case in which the accepted question had a&nbsp;<em>score</em>&nbsp;lower than 1, a -1 is assigned.&nbsp;</li> <li><strong>ABody:</strong>&nbsp;&nbsp;HTML text of the answer.</li> <li><strong>Score:</strong>&nbsp;Upvotes - downvotes of the answer.</li> <li><strong>url_Answer:</strong>&nbsp;&nbsp;URL of the answer. The question URL can be from different websites.&nbsp;&nbsp;</li> <li><strong>type:</strong>&nbsp;best or accepted. Accepted in the case that the information belongs to the accepted answer of the&nbsp;<em>ParentId&nbsp;</em>question and best in the case in which it is the most voted question of the&nbsp;<em>ParentId&nbsp;</em>question.</li> <li><strong>Date:&nbsp;</strong>Creation date of the answer.</li> </ul> <p><strong>Questions - Variables</strong></p> <ul> <li><strong>QID</strong>: Unique identification of the question in the Q&amp;A website.&nbsp;</li> <li><strong>AcceptedAnswerId</strong>: Unique identification of the accepted answer for a specific question in the Q&amp;A website. In the case in which a question had a most-voted answer different from the accepted one, and the accepted one had a negative score, a -1 was assigned to the&nbsp;&nbsp;<em>AcceptedAnswerId</em><strong>.&nbsp;</strong></li> <li><strong>BestAnswerId</strong>: Unique identification of the most voted answer for a specific question in the Q&amp;A website. In the case in which the most voted and accepted questions were the same, then a -1 was assigned to the&nbsp;<em>BestAnswerId</em>.&nbsp;&nbsp;</li> <li><strong>Qtitle</strong>: Title of the question.</li> <li><strong>QBody</strong>: HTML text of the question.</li> <li><strong>Score</strong>: Upvotes - downvotes of the questions.</li> <li><strong>QTags</strong>: Tags that are associated with each question.</li> <li><strong>url_question</strong>: URL of the question. The question URL can be from different websites. &nbsp;</li> <li><strong>Date</strong>: Creation date of the question</li> </ul> <p>This dataset is a subset of the Stack Exchange dump of 03.2021 (<a href="https://archive.org/details/stackexchange_20210301">https://archive.org/details/stackexchange_20210301</a>) in which a series of filters were applied to obtain the data used in the study.</p>

opencc-by-4.0May 2023View details →
zenodo44/100

AgriCarbon-EO Winter wheat Net Ecosystem Exchange and Biomass over South-west France at 10 m resolution

<p>Dataset contains the outputs of the AgriCarbon-EO</p> <p>An agronomical modeling tool for the carbon and water flux estimates by Bayesian assimilation of S2 and LandSat8 remote sensing data into the Prosail radiative transfer model and the SAFYE-CO2 crop model.<br> -----------------------<br> -for TILE : T31TCJ &nbsp;<br> -for year: 2017<br> -for Winter wheat crops<br> - at 10 m resolution</p> <p>&nbsp;</p> <p>Maps:<br> -file: &quot;GLA_statmap.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 4 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The R2 of the GLAI observed by satellite and simulations from 2016/11/01 until 2017/08/01<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The RMSE of the GLAI observed by satellite and simulations from 2016/11/01 until 2017/08/01<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The Bias of the GLAI observed by satellite and simulations from 2016/11/01 until 2017/08/01<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The number of images that are assimilated into SAFYE-CO2 &nbsp;from 2016/11/01 until 2017/08/01</p> <p>-file: &quot;emerg_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of emerg retrieved by the SAFYE-CO2 inversion in days of simulation (the simulation begins the 01/01/2016).<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of emerg retrieved by the SAFYE-CO2 inversion.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;<br> -file: &quot;LUEa_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of LUEa retrieved by the SAFYE-CO2 inversion in g/MJ.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of LUEa retrieved by the SAFYE-CO2 inversion in g/MJ.</p> <p>-file: &quot;SENa_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of Sena retrieved by the SAFYE-CO2 inversion in &deg;C.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of Sena retrieved by the SAFYE-CO2 inversion in &deg;C.</p> <p>-file: &quot;SENb_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of SENb retrieved by the SAFYE-CO2 inversion.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of SENb retrieved by the SAFYE-CO2 inversion.</p> <p>-file: &quot;PRT_La_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of DAM retrieved by the SAFYE-CO2 inversion.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of DAM retrieved by the SAFYE-CO2 inversion.</p> <p>-file: &quot;DAM_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of DAM retrieved by the SAFYE-CO2 inversion in g/m2.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of DAM &nbsp;retrieved by the SAFYE-CO2 inversion in g/m2.</p> <p>-file: &quot;NEP_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of NEP retrieved by the SAFYE-CO2 inversion in g/m2.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of NEP retrieved by the SAFYE-CO2 inversion in g/m2.</p> <p>-file: &quot;NECB_exportG_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of NECB&nbsp;retrieved by the SAFYE-CO2 inversion in g/m2 ,&nbsp;considering an export sc&eacute;nario with grains export only.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of NECB_exportG&nbsp;retrieved by the SAFYE-CO2 inversion in g/m2.</p> <p>-file: &quot;NECB_exportGLS_wheat_2017.tif&quot;<br> &nbsp;&nbsp; &nbsp;Description: A raster with 2 bands containing respectively:<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The mean value of NECB retrieved by the SAFYE-CO2 inversion in g/m2,&nbsp;considering an export sc&eacute;nario with grains, stems and leaves.<br> &nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;*The standard deviation of NECB_exportGLS retrieved by the SAFYE-CO2 inversion in g/m2.</p> <p>&nbsp;</p> <p>Shapefiles a GIS:&nbsp;<br> -file: &quot;S2_TILE_T31TCJ.shp&quot;<br> &nbsp;&nbsp; &nbsp;Description: shape file of the contour of the T231 TCJ sentinel2 tile&nbsp;<br> -file: &quot;FR_AUR.shp&quot;<br> &nbsp;&nbsp; &nbsp;Description: shape file of the contour of AURADE experimental field&nbsp;<br> -file: &quot;FR_AUR_TOWER.shp&quot;<br> &nbsp;&nbsp; &nbsp;Description: shape file of the location of the AURADE eddy covariance flux tower<br> -file: &quot;POI_2017.shp&quot;<br> &nbsp;&nbsp; &nbsp;Description: &nbsp;shape file of the location of points of interest that illustrate the ... paper<br> -file: &quot;ESU_DAM.shp&quot;<br> &nbsp;&nbsp; &nbsp;Description: shape file of the contour of the plots where dry biomass samples were taken.<br> -file: &quot;ESU_DAM_points.shp&quot;<br> &nbsp;&nbsp; &nbsp;Description: shape file of the location of the points where dry biomass samples were taken.<br> -file: &quot;mapT31TCJ_spamaps.qgz&quot;<br> &nbsp; &nbsp; &nbsp; &nbsp; QGIS project file for the visualisation of the NEP maps.<br> &nbsp;</p>

opencc-by-4.0Jan 2023View details →
edi44/100

Seasonal trends in leaf level physiological parameters, obtained through gas exchange, reflectance spectroscopy and, functional trait analysis

This data package contains leaf level gas exchange, reflectance spectroscopy, and functional trait measurements collected in six common deciduous tree species across the full 2021 growth season (May -October) at the Black Rock Forest in Cornwall, New York, USA. Branches were sampled predawn using the shotgun method of branch retrieval, and re-cut under water to preserve hydraulic function before transport to the lab. Gas exchange data included in this package are stomatal response curves (irradiance response) which can be used to estimate stomatal slope and intercept. Spectroscopic data are full-range (350 – 2500 nm) leaf reflectance spectra collected on all leaves sampled for gas exchange and traits. Leaf level trait measurements include leaf mass per area (LMA), leaf dry matter content (LDMC), elemental nitrogen and carbon expressed on a per mass basis, and fitted values of Asat, Vcmax, and Rdark scaled to a reference temperature of 25C. Data from these three data tables (stomatal responce, spectra, leaf traits) can be cross referenced using the unique SampleID. Additional data tables include stomatal anatomy (stomatal density, length, and width of the guard cells), hydraulic properties estimated from pressure volume curves (relative water deficit at the turgor loss point), and predawn water potential for all sampled branches. Site level data includes the dGPS location of each sampled tree, its species, and DBH. Each tabular data file (*.csv) is accompanied by a data description (*_dd.csv) which includes relevant metadata (unit, definition, data type). Copies of all raw instrument output (spectroradiometer, LICOR, pressure chamber) and included as .zip files.

openCC (other)Jun 2023View details →
edi44/100

Soil cation exchange capacity (CEC) from 9 Hillslope Project sites in Macon County, North Carolina, within the Upper Little Tennessee River Basin

Cation exchange capacity (CEC) of soil was analyzed as part of the hillslope plots in Macon County, North Carolina. There were 9 hillslope sites representing a gradient of development, including forested, valley agriculture, and mountain housing developments. There were 12 10 x 10-m plots at each site. A soil probe was used to collect soils from 3 depths at each plot: 0-10 cm, 10-30 cm, and 30 + cm. Soil was then dried, processed, and analyzed for CEC at the Coweeta Analytical Laboratory.

openCustomJan 2020View details →
zenodo40/100

FIG. 12 in Hunting, husbandry, exchange and ritual: animal use and meaning at Moxviquil, Chiapas Mexico

FIG. 12. — Mollusca: A, B, Lysinoe ghiesbreghti Nyst, 1841; C, D, Pachychilus sp.; E, Dosinia sp. or Mercenaria mercenaria Linnaeus, 1758; F, Ostreidae shell fragment. Photographs: Elizabeth Paris. Scale bar: 4 cm.

opencc-zeroMar 2020View details →
zenodo40/100

FIG. 4. — A-I in Hunting, husbandry, exchange and ritual: animal use and meaning at Moxviquil, Chiapas Mexico

FIG. 4. — A-I, Canis lupus familiaris Linnaeus, 1758; J-L, Urocyon cinereoargenteus Schreber, 1775; M-X, Canis lupus familiaris Linnaeus, 1758; A, adult left mandible with PM2, PM3, PM4, M1; B, juvenile left mandible fragment with DPM2, with adult cusp visible below; C, D, two adult left mandibular PM3; E, juvenile right maxillary I3; F, G, two juvenile left mandibular M1; H, adult right maxilla with PM4, M1, M2; I, adult right maxillary PM4; J, adult right maxillary PM4; K, L, two adult left maxillary PM4; M, adult maxillary left canine with perforated root; N, O, standard juvenile right maxillary M1 with cusp mutation; P-R, standard juvenile left maxillary M1 with cusp mutation; S, miniature adult left maxillary M1 with cusp mutation; T, miniature adult right maxillary M1 with cusp mutation; U, miniature adult left maxillary M1 with cusp mutation; V, adult left maxillary PM2 and maxilla fragment; W, atlas; X, juvenile ribs, including a broken and healed rib (two left and four right fragments). Photographs: Elizabeth Paris. Scale bar: 4 cm.

opencc-zeroMar 2020View details →
zenodo40/100

FIG. 1 in Hunting, husbandry, exchange and ritual: animal use and meaning at Moxviquil, Chiapas Mexico

FIG. 1. — Map of the Maya culture area with, archaeological sites and, modern towns mentioned in the text. Drafted by Elizabeth Paris, from base map by Wikimedia Commons (commons.wikimedia.org). Abbreviations: CD, Central Depression; CP, Comitán Plateau; EH, Eastern Highlands; SL, Sierra Lacandona; SMC, Sierra Madre de Chiapas; WH, Western Highlands.

opencc-zeroMar 2020View details →
zenodo40/100

FIG. 3 in Hunting, husbandry, exchange and ritual: animal use and meaning at Moxviquil, Chiapas Mexico

FIG. 3. — Odocoileus virginianus Zimmermann, 1780 antler fragments from the monumental zone. Photographs: Elizabeth Paris. Scale bar: 4 cm.

opencc-zeroMar 2020View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record