Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
397
datasets available to search
ShareScore release 0.9.0
Dataset results
397 results for “functional interactions”
Tree seedling shade tolerance arises from interactions with microbes and is mediated by functional traits
Open the record for dataset details and reuse information.
Data from: Trait matching and phenological overlap increase the spatio-temporal stability and functionality of plant-pollinator interactions
Open the record for dataset details and reuse information.
Cross-kingdom interactions and functional patterns of active microbiota matter in governing deadwood decay
Open the record for dataset details and reuse information.
Functional traits and stable isotopes reveal trophic interactions in a highly invaded reservoir: implications for fisheries
Open the record for dataset details and reuse information.
Data for: Fundamental interaction niches: towards a functional understanding of ecological networks’ resilience
Open the record for dataset details and reuse information.
The associations of gene-gene interactions among the 6 variants in 3 genes related to inflammation and endothelial function with carotid stenosis were performed by the GMDR approach
Open the record for dataset details and reuse information.
Data from: Temperature and carbon dioxide interactively drive shifts in the compositional and functional structure of peatland protist communities
Open the record for dataset details and reuse information.
Data from: Ligand-receptor interactions induce and mediate regulatory functions of BATF3+ B cells
Open the record for dataset details and reuse information.
Integrating predator energetic balance, risk-taking behavior and microhabitat in functional response to untangle indirect interactions in a multispecies vertebrate community
Open the record for dataset details and reuse information.
ANDEAN frugivory: data on plant–bird interactions and functional traits of plant and bird species from montane forests along the Andes
Open the record for dataset details and reuse information.
Functional interactions among neurons within single columns of macaque V1
Open the record for dataset details and reuse information.
Genotype-environment interactions shape leaf functional traits of cacao in agroforests
Open the record for dataset details and reuse information.
Data from: From structure to function in mutualistic interaction networks: topologically important frugivores have greater potential as seed dispersers
1. Networks of mutualistic interactions between animals and plants are considered a pivotal part of ecological communities. However, mutualistic networks are rarely studied from the perspective of species-specific roles, and it remains to be established whether those animal species more relevant for network structure also contribute more to the ecological functions derived from interactions. 2. Here, we relate the contribution to seed dispersal of vertebrate species with their topological role in frugivore-plant interaction networks. For one year in two localities with remnant patches of Colombian tropical dry forest, we sampled abundance, morphology, behavior, and fruit consumption from fleshy-fruited plants of various frugivore species. 3. We assessed the network topological role of each frugivore species by integrating their degree of generalization in interactions with plants with their contributions to network nestedness and modularity. We estimated the potential contribution of each frugivore species to community-wide seed dispersal, on the basis of a set of frugivore ecological, morphological and behavioral characteristics important for seed dispersal, together with frugivore abundance and frugivory degree. 4. The various frugivore species showed strong differences in their network structural roles, with generalist species contributing the most to network modularity and nestedness. Frugivores also showed strong variability in terms of potential contribution to seed dispersal, depending on the specific combinations of frugivore abundance, frugivory degree and the different traits and behaviors. 5. For both localities, the seed dispersal potential of a frugivore species responded positively to its contribution to network structure, evidencing that the most important frugivore species in the network topology were also those making the strongest contribution as seed dispersers. Contribution to network structure was correlated with frugivore abundance, diet, and behavioral characteristics. This suggests that the species-level link between structure and function is due to the fact that the occurrence of frugivore-plant interactions depends largely on the characteristics of the frugivore involved, which also condition its ultimate role in seed dispersal. 22-May-2020
Data from: Linking dung beetle mediated functions to interactions in the Atlantic Forest: sampling design matters
<p>Interactions between dung beetles and vertebrate dung are intimately linked to a suite of ecosystem functions in tropical forests. We show that the trapping method and the type of dung used affect the suite of beetles captured, with the potential to influence the outcome of experiments linking functions to interactions.</p>
Data from: Interactive effects of climate change and biodiversity loss on ecosystem functioning
Climate change and biodiversity loss are expected to simultaneously affect ecosystems, however research on how each driver mediates the effect of the other has been limited in scope. The multiple stressor framework emphasizes non-additive effects, but biodiversity may also buffer the effects of climate change, and climate change may alter which mechanisms underlie biodiversity-function relationships. Here, we performed an experiment using tank bromeliad ecosystems to test the various ways that rainfall changes and litter diversity may jointly determine ecological processes. Litter diversity and rainfall changes interactively affected multiple functions, but how depended on the process measured. High litter diversity buffered the effects of altered rainfall on detritivore communities, evidence of insurance against impacts of climate change. Altered rainfall affected the mechanisms by which litter diversity influenced decomposition, reducing the importance of complementary attributes of species ("complementarity effects"), and resulting in an increasing dependence on the maintenance of specific species ("dominance effects"). Finally, altered rainfall conditions prevented litter diversity from fuelling methanogenesis, because such changes in rainfall reduced microbial activity by 58%. Together, these results demonstrate that the effects of climate change and biodiversity loss on ecosystems cannot be understood in isolation and interactions between these stressors can be multifaceted.
Data from: Frugivore biodiversity and complementarity in interaction networks enhance landscape-scale seed dispersal function
1. Animal biodiversity matters for the provision of ecosystem functions derived from trophic activity. However, the mechanisms underlying this pattern remain elusive since animal abundance and diversity, which are the components commonly used for representing biodiversity, provide poor information about ecological complementarity in species assemblages. An approach based on species interaction networks may overcome this constraint. 2. Here, we relate frugivore biodiversity and frugivore-plant network structure with landscape-scale seed dispersal function. We sampled, for two years, and at fourteen plots with variable assemblages of frugivores and plants in the Cantabrian Range (N Spain), data on the abundance and diversity of frugivorous birds, the consumption of fleshy fruits of woody plants, and the landscape-scale patterns of avian seed deposition. As a measure of interaction complementarity in seed dispersal networks, we estimated the degree to which frugivore and plant species specialize in their interacting partners. 3. Specialization varied strongly across the seed dispersal networks of the different plots, being higher in networks harboring smaller bird species that dispersed mostly small-fruited plants, and also in networks with late-ripening, dominant fruiting species dispersed mostly by wintering birds. 4. Bird abundance markedly affected seed deposition. Plots harboring more birds received a higher density of dispersed seeds, and showed higher probabilities of seed arrival and seed deposition in open microhabitats. Bird diversity also had a positive effect on the density of dispersed seed and, to a lesser extent, seed arrival probability. Independently of frugivore abundance and diversity, the density of dispersed seeds increased in plots where seed dispersal networks showed a higher degree of specialization. 5. This study considers the structure of interaction networks to re-address the relationship between biodiversity and ecosystem functionality, evidencing that specialization in frugivore-plant networks drives the large-scale process of seed dispersal. These results encourage the consideration of interaction complementarity as an underlying mechanism linking animal biodiversity and trophic-related functions.
Data from: Functional outcomes of mutualistic network interactions: a community-scale study of frugivore gut passage on germination
1. Current understanding of mutualistic networks is grounded largely in data on interaction frequency, yet mutualistic network dynamics are also shaped by interaction quality—the functional outcomes of individual interactions on reproduction and survival. The difficulty of obtaining data on functional outcomes has resulted in limited understanding of functional variation among a network's pairwise species interactions, of the study designs that are necessary to capture major sources of functional variation, and of predictors of functional variation that may allow generalization across networks. 2. In this community-scale study, we targeted a key functional outcome in plant-frugivore networks: the impact of frugivore gut passage on seed germination. We used captive frugivore feeding trials and germination experiments in an island ecosystem, attaining species-level coverage across all extant native frugivores and the plants they consume to 1) assess sources of functional variation, 2) separate effects of pulp removal from those of scarification via gut passage, and 3) test trait-based correlates of gut passage effect sizes. 3. We found antagonistic seed predation effects of a frugivore previously assumed to be a seed disperser, highlighting the need to consider functional outcomes rather than interaction frequency alone. The other frugivores each exhibited similar impacts for individual plant species, with benefits primarily caused by pulp removal rather than scarification, supporting the use of animal functional groups in this context. In contrast, plant species varied widely in impacts of gut passage on germination. Species with smaller seeds and more frugivore partners had larger benefits of gut passage, showing promise for network metrics and functional traits to predict functional variation among plants. 4. Synthesis. Combining network and demographic approaches, we assessed the degree and sources of variation in a key functional outcome of plant-frugivore interactions across an entire network. Using a detailed study design, our work shows how simpler study designs can capture primary sources of functional variation and that functional traits and network metrics may allow generalization across networks. Efficiently measuring and generalizing sources of functional variation within mutualistic networks will strengthen our ability to model network dynamics and predict mutualist responses to global change.
Data from: The importance of species identity and interactions on multifunctionality depends on how ecosystem functions are valued
Studies investigating how biodiversity affects ecosystem functioning increasingly focus on multiple functions measured simultaneously ('multifunctionality'). However, few such studies assess the role of species interactions, particularly under alternative environmental scenarios, despite interactions being key to ecosystem functioning. Here we address five questions of central importance to ecosystem multifunctionality using a terrestrial animal system: 1) Does the contribution of individual species differ for different ecosystem functions?; 2) Do inter-species interactions affect the delivery of single functions and multiple functions?; 3) Does the community composition which maximises individual functions also maximise multifunctionality?; 4) Is the functional role of individual species, and the effect of interspecific interactions, modified by changing environmental conditions?; and 5) How do these roles and interactions change under varying scenarios where ecosystem services are weighted to reflect different societal preferences? We manipulated species' relative abundance in dung beetle communities and measured 16 functions contributing to dung decomposition, plant productivity, nutrient recycling, reduction of greenhouse gases, and microbial activity. Using the Multivariate Diversity-Interactions framework, we assessed how changes in species identity, composition, and interspecific interactions affected these functions in combination with an environmental driver (increased precipitation). This allowed us to identify key species and interactions across multiple functions. We then developed a Desirability Function Approach to examine how individual species and species mixtures contribute to a desired state of overall ecosystem functioning. Species contributed unequally to individual functions, and to multifunctionality, and individual functions were maximised by different community compositions. Moreover, the species and interactions important for maintaining overall multifunctionality depended on the weight given to individual functions. This combination of methodological approaches allows us to resolve the interactions and indirect effects among species that drive ecosystem functioning, revealing how multiple aspects of biodiversity can simultaneously drive ecosystem functioning. Optimal multifunctionality is therefore context-dependent, and is sensitive to the valuation of services. Our results highlight the importance of a multifunctionality perspective for complete assessment of species' functional contributions.
Data from: Modality interactions alter the shape of acoustic mate preference functions in gray treefrogs
Sexual selection takes place in complex environments where females evaluating male mating signals are confronted with stimuli from multiple sources and modalities. The pattern of expression of female preferences may be influenced by interactions between modalities, changing the shape of female preference functions, and thus ultimately altering the selective landscape acting on male signal evolution. We tested the hypothesis that the responses of female gray treefrogs, Hyla versicolor, to acoustic male advertisement calls are affected by interactions with visual stimuli. We measured preference functions for several call traits under two experimental conditions: unimodal (only acoustic signals presented), and multimodal (acoustic signals presented along with a video-animated calling male). We found that females were more responsive to multimodal stimulus presentations and, compared to unimodal playbacks, had weaker preferences for temporal call characteristics. We compared the preference functions obtained in these two treatments to the distribution of male call characteristics to make inferences on the strength and direction of selection expected to act on male calls. Modality interactions have the potential to influence the course of signal evolution and thus are an important consideration in sexual selection studies.
Data from: The value of trophic interactions for ecosystem function: dung beetle communities influence seed burial and seedling recruitment in tropical forests
Anthropogenic activities are causing species extinctions, raising concerns about the consequences of changing biological communities for ecosystem functioning. To address this, we investigated how dung beetle communities influence seed burial and seedling recruitment in the Brazilian Amazon. First, we conducted a burial and retrieval experiment using seed mimics. We found that dung beetle biomass had a stronger positive effect on the burial of large than small beads, suggesting that anthropogenic reductions in large-bodied beetles will have the greatest effect on the secondary dispersal of large-seeded plant species. Second, we established mesocosm experiments in which dung beetle communities buried Myrciaria dubia seeds to examine plant emergence and survival. Contrary to expectations, we found that beetle diversity and biomass negatively influenced seedling emergence, but positively affected the survival of seedlings that emerged. Finally, we conducted germination trials to establish the optimum burial depth of experimental seeds, revealing a negative relationship between burial depth and seedling emergence success. Our results provide novel evidence that seed burial by dung beetles may be detrimental for the emergence of some seed species. However, we also detected positive impacts of beetle activity on seedling recruitment, which are probably because of their influence on soil properties. Overall, this study provides new evidence that anthropogenic impacts on dung beetle communities could influence the structure of tropical forests; in particular, their capacity to regenerate and continue to provide valuable functions and services.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.