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78 results for “gears”
Data from: Comparison of fish detections, community diversity, and relative abundance using environmental DNA metabarcoding and traditional gears
Background <p>Detecting species at low abundance, including aquatic invasive species (AIS), is critical for making informed management decisions. Environmental DNA (eDNA) methods have become a powerful tool for rare or cryptic species detection; however, many eDNA assays offer limited utility for community‐level analyses due to their use of species‐specific (presence/absence) 'barcodes'. Metabarcoding methods provide information on entire communities based on sequencing of all taxon‐specific barcodes within an eDNA sample.</p> Aims <p>Evaluate measures of fish species detections, community diversity, and estimates of relative abundance based on eDNA metabarcoding and traditional fisheries sampling approaches in the context of fish community characterization and AIS survellience.</p> Materials and Methods <p>In 2016, eight limnologically diverse lakes (surface area range: 13 – 1,728 ha) in Michigan, USA were sampled using a variety of traditional fisheries gears to characterize fish community composition. Environmental DNAs from surface (33 ± 6, mean ± 1 SD) and benthic (14 ± 2) water samples from each lake were isolated and amplified for two metabarcoding markers (mitochondrial 12S and 16S rDNA loci) using fish‐specific primers. Fish species detected within each lake were determined by comparing the sequencing data to a database of sequences from native Michigan fish species and 19 AIS on the Michigan's Watch List.</p> Results <p>Analysis of species accumulation curves indicated multi‐locus eDNA metabarcoding assays can enhance species detection capacities and characterize 95% of a fish community in fewer sampling efforts than traditional gear (range: 2 – 62, median: 14). In addition, all AIS detected in traditional gear samples were also detected by eDNA, while some AIS detected by eDNA assays were absent from traditional gear samples.</p> Discussion <p>Results reported here are, in part, driven by the lack of species‐selectivity during eDNA sampling events. Given the efficacy of eDNA assays, we suggest multi‐locus eDNA metabarcoding assays be implemented in early detection efforts.</p>
Data from: Evaluation of potential overwinter mortality of age-0 walleye and appropriate age-1 sampling gear
Potential recruitment of age-0 Walleye Sander vitreus to adults is often indexed by the relative abundance of age-0 individuals during their first summer or fall. However, relationships between age-0 and adult Walleye abundance are often weak or nonsignificant in many waters. Overwinter mortality during the first year of life has been hypothesized as an important limitation to Walleye recruitment in lakes, but limited evidence of such mortality exists, likely due to difficulties in sampling age-1 Walleye during spring. The objectives of this study were to: 1) compare results from nighttime electrofishing to index relative abundance of age-1 Walleyes with relative abundance indices of minifyke nets in four eastern South Dakota lakes; 2) determine whether size-selective mortality was occurring in those four lakes; and 3) if size-selective mortality was occurring in these lakes, determine whether that mortality was attributed to body condition. We sampled four natural lakes in eastern South Dakota 2 wk after ice-off in 2013 and 2014. Precision of nighttime electrofishing (coefficient of variation = 216.6) was greater than that estimated for minifyke nets (coefficient of variation = 338.5) across both years. We detected no differences in length-frequency distributions of collected spring age-1 Walleye between the two gears. Age-0 fall relative abundance indices from electrofishing were significantly greater (P < 0.01) than spring age-1 nighttime electrofishing indices of relative abundance at three of the four study lakes, indicating that overwinter mortality may occur at a substantial rate during the first year of life for Walleye in these systems. Quantile–quantile regression plots showed evidence of size-selective mortality in three of four lakes sampled. However, body condition of age-0 Walleye appeared to have little to no influence on overwinter mortality. Instead, we suggest that smaller-sized walleye may be more vulnerable to overwinter predation. Collectively, these results provide evidence of previously hypothesized overwinter mortality within the first year for Walleye and indicate possibilities for indexing potential adult recruitment of Walleye just after this critical period.
Data set for the publication entitled "An exact system of generation for face-hobbed hypoid gears: Application to high reduction hypoid gear drives"
<p>This data set includes 16 files corresponding to the paper with doi:10.1016/j.mechmachtheory.2022.105115 plus a readme.txt file. See the readme.txt file for a description of the contents of the 16 files.</p>
Effect of Soccer Head Gear to Reduce Concussions
ClinicalTrials.gov study NCT02850926. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Supporting Infant Development Through Tummy Time, Positioning, and Limiting Baby Gear
ClinicalTrials.gov study NCT05878275. IPD Sharing: YES. Countries: 1. Publications: 8.
Data from: Comparison of fish detections, community diversity, and relative abundance using environmental DNA metabarcoding and traditional gears
Open the record for dataset details and reuse information.
Data from: Evaluation of potential overwinter mortality of age-0 walleye and appropriate age-1 sampling gear
Open the record for dataset details and reuse information.
Data from: Shifting up a gear with iDNA: from mammal detection events to standardized surveys
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Data from: Effects of gear restriction on the abundance of juvenile fishes along sandy beaches in Hawai'i
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Machine learning based root stress calculation model for gears with progressive curved path of contact
<p><em>A machine learning based model for calculation of root stress in gears with a progressive curved path of contact is proposed. The prediction model is used as a surrogate model to the finite element analysis simulations, from which the data was collected. The results of the validation of all the methods are presented. Further validation was done with new simulations.</em></p>
Data from: Early evolution of the ossicular chain in Cetacea: into the middle ear gears of a semi-aquatic protocetid whale
Modifications of the morphology and acoustic properties of the ossicular chain are among the major changes that accompanied the adaptation of Cetacea to the aquatic environment. Thus, data on the middle ear ossicles of early whales are crucial clues to understand the first steps of the emblematic terrestrial/aquatic transition that occurred in that group. Yet, the delicate nature and very small size of these bones make their preservation in the fossil record extremely rare. Due to the scarcity of available data, major questions remain concerning the sound transmission pathways in early non-fully aquatic whales. Virtual reconstruction of a partially complete ossicular chain of an Eocene protocetid whale documents for the first time the three ossicles of a semi-aquatic archaeocete. Contrary to previous hypotheses, these ossicles present different evolutionary patterns, showing that the ossicular chain does not act as a single morphological module. Functional analyses of the different middle ear units highlight a mosaic pattern of terrestrial and aquatic signatures. This integrative anatomical and functional study brings strong evidence that protocetids were adapted to their dual acoustic environment with efficient hearing in both air and water.
Supplementary material 8 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Movie
Supplementary material 9 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Figure
Supplementary material 7 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Movie
Supplementary material 5 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Figure
Supplementary material 6 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Table
Supplementary material 4 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Measurement
Supplementary material 3 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Movie
Supplementary material 2 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Movie
Supplementary material 13 from: Ichiishi W, Shimada S, Motobayashi T, Abe H (2019) Completely engaged three-dimensional mandibular gear-like structures in the adult horned beetles: reconsideration of bark-carving behaviors (Coleoptera, Scarabaeidae, Dynastinae). ZooKeys 813: 89-110. https://doi.org/10.3897/zookeys.813.29236
: Data type: Movie
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.