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52 results for “genbank”
NCBI GenBank bacterial sequence assemblies 3/4
<p>Bacterial genomes and scaffolds downloaded from the NCBI GenBank assembly database (part 3/4).</p>
The genomic location or Genbank accession of Tas2r genes in amphibians
<p><strong>Scaffold or chromosome location of <em>Tas2r</em> genes in amphibians</strong></p>
Database of: The Mexican flora as a study case in systematics (Taxonomy, Phylogenetics, and Evolution); GenBank's accession meta-analysis
<p>Result database of The Mexican flora as a study case in systematics (Taxonomy, Phylogenetics, and Evolution); GenBank’s accession meta-analysis.</p>
Figure 1 from: Sonet G, Jordaens K, Braet Y, Bourguignon L, Dupont E, Backeljau T, de Meyer M, Desmyter S (2013) Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France. ZooKeys 365: 307-328. https://doi.org/10.3897/zookeys.365.6027
Figure 1 - Best matches obtained for each species using five different search procedures:Barcode fragment (642–658 bp) submitted to GenBank (1) and the public records of BOLD (2); barcode fragment submitted to the species level records of BOLD, including early-released sequences (3); barcode fragment and keyword "barcode" submitted to GenBank (4) and longer COI fragment (1412–1534 bp) submitted to GenBank (5). Numbers of haplotypes used as queries are between parentheses. Longer COI fragments were obtained for all species except for Protophormia terraenovae.
oopsacas minuta proteome with genbank id and locus tag
<p>oopsacas minuta proteome with genbank id and locus tag</p>
Georeferenced genbank sequence accession numbers from GBIF
<blockquote> <p>Request = I am interested in only occurrence records that have both coordinates and accessions. Unfortunately, it appears that while I can specify “Including coordinates” in Advance search, there is no “Including accessions”.</p> </blockquote> <p>GBIF: Custom HiveSQL query on the GBIF occurrence store.</p> <pre><code class="language-sql">SELECT o.associatedSequences, o.gbifID, o.decimalLatitude, o.decimalLongitude, o.kingdom, o.phylum, o.class, o.order_, o.family, o.genus, o.species, o.infraspecificEpithet, o.basisOfRecord, o.v_geodeticdatum, o.coordinateuncertaintyinmeters, o.issue FROM prod_h.occurrence_hdfs o WHERE o.associatedSequences IS NOT NULL AND o.decimalLatitude IS NOT NULL AND o.hasgeospatialissues = false</code></pre> <p>98 GBIF datasets contributed to this data export.</p> <p>Total records = 9,181,930</p>
APPENDIX Individuals included in the genetic and/or skull morphology analyses are presented with source and locality information (reference to sites in Fig. 1 are given in parentheses when available). Voucher numbers are provided for individuals that were collected: AMNH — American Museum of Natural History, New York, NY, USA, BMNH — Natural History Museum, London, UK, FMNH — Field Museum, Chicago, IL, USA, HZM — Harrison Zoological Museum, Kent, UK, MCZ — Museum of Comparative Zoology, Harvard, MA, USA, MZB — Muzeum Zoologicum Bogoriense, Bogor, Indonesia, RMNH — National Museum of Natural History Naturalis, Leiden, Netherlands, SEN — Senckenberg Museum, Frankfurt, Germany, TK — tissue collection and TTU — specimen numbers; Texas Tech. University, Lubbock, TX, USA, and USNM — Smithsonian Institute, Washington D.C., USA. All specimens from peninsular Malaysia with THK or MBCRU field numbers were collected by A. Zubaid, and the specimens or duplicate wing punches were deposited at UKM (Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia). The original taxonomy of type specimens (type) are listed. Haplotypes (Hap) are given for individuals of H. bicolor (=H. bicolor-131) and H. kunzi (=H. bicolor-142). GenBank accession numbers are given for one representative of each unique haplotype in A new species in the Hipposideros bicolor group (Chiroptera: Hipposideridae) from Peninsular Malaysia
APPENDIX Individuals included in the genetic and/or skull morphology analyses are presented with source and locality information (reference to sites in Fig. 1 are given in parentheses when available). Voucher numbers are provided for individuals that were collected: AMNH — American Museum of Natural History, New York, NY, USA, BMNH — Natural History Museum, London, UK, FMNH — Field Museum, Chicago, IL, USA, HZM — Harrison Zoological Museum, Kent, UK, MCZ — Museum of Comparative Zoology, Harvard, MA, USA, MZB — Muzeum Zoologicum Bogoriense, Bogor, Indonesia, RMNH — National Museum of Natural History Naturalis, Leiden, Netherlands, SEN — Senckenberg Museum, Frankfurt, Germany, TK — tissue collection and TTU — specimen numbers; Texas Tech. University, Lubbock, TX, USA, and USNM — Smithsonian Institute, Washington D.C., USA. All specimens from peninsular Malaysia with THK or MBCRU field numbers were collected by A. Zubaid, and the specimens or duplicate wing punches were deposited at UKM (Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia). The original taxonomy of type specimens (type) are listed. Haplotypes (Hap) are given for individuals of H. bicolor (=H. bicolor-131) and H. kunzi (=H. bicolor-142). GenBank accession numbers are given for one representative of each unique haplotype
APPENDIX Bat specimens of the genera Hypsugo, Neoromicia, and Pipistrellus (Vespertilionidae) used in the molecular analysis of this study. Tadarida (Molossidae) used as outgroup * — previously published by Monadjem et al. (2013a); ** — Additional GenBank specimen in Bat diversity in the Simandou Mountain Range of Guinea, with the description of a new white-winged vespertilionid
APPENDIX Bat specimens of the genera Hypsugo, Neoromicia, and Pipistrellus (Vespertilionidae) used in the molecular analysis of this study. Tadarida (Molossidae) used as outgroup * — previously published by Monadjem et al. (2013a); ** — Additional GenBank specimen
List of specimens, species codes, localities (NI, Northern Iberia; CI, Central Iberia; SI, Southern Iberia; AU, Austria; BL, Bulgaria; CR, Croatia; CZ, Czech Republic; DK, Denmark; FR, France; GE, Germany; GR, Greece; HN, Hungary; SD, Sweden; SW, Switzerland; TK, Turkey), haplotypes codes for species and GenBank accession numbers of the samples used for an overall molecular screening of bat cryptic diversity in Iberia using a mtDNA cytb fragment in The Iberian contribution to cryptic diversity in European bats
List of specimens, species codes, localities (NI, Northern Iberia; CI, Central Iberia; SI, Southern Iberia; AU, Austria; BL, Bulgaria; CR, Croatia; CZ, Czech Republic; DK, Denmark; FR, France; GE, Germany; GR, Greece; HN, Hungary; SD, Sweden; SW, Switzerland; TK, Turkey), haplotypes codes for species and GenBank accession numbers of the samples used for an overall molecular screening of bat cryptic diversity in Iberia using a mtDNA cytb fragment
Genbank Archaea Dataset with ANI=0.95 and k=21
Open the record for dataset details and reuse information.
APPENDIX B. Tissue samples included and GenBank numbers for Cyt b in Philippine bats of the genus Kerivoula (Chiroptera: Vespertilionidae): Overview and assessment of variation in K. pellucida and K. whiteheadi
APPENDIX B. Tissue samples included and GenBank numbers for Cyt b and CO1 sequences.
Distance matrix showing the distance between twenty-three eight most similar sequences from NCBI GenBank.
<p>Distance matrix showing the distance between twenty-eight most similar sequences from NCBI GenBank.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.