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74 results for “gibbons”
On following pages: 14. Hainan Crested Gibbon (Nomascus hainanus); 15. Northern Yellow-cheeked Crested Gibbon 17. Southern White-cheeked Crested Gibbon (Nomascus siki); 18. Southern Yellow-cheeked Crested Gibbon (Nomascus (Nomascus annamensis); 16. Northern White-cheeked Crested Gibbon (Nomascus leucogenys); gabriellae); 19. Siamang (Symphalangus syndactylus). in Hylobatidae
On following pages: 14. Hainan Crested Gibbon (Nomascus hainanus); 15. Northern Yellow-cheeked Crested Gibbon 17. Southern White-cheeked Crested Gibbon (Nomascus siki); 18. Southern Yellow-cheeked Crested Gibbon (Nomascus (Nomascus annamensis); 16. Northern White-cheeked Crested Gibbon (Nomascus leucogenys); gabriellae); 19. Siamang (Symphalangus syndactylus).
On following pages: 3. Agile Gibbon (Hylobates agilis); 4. Bornean White-bearded Gibbon (Hylobates albibarbis); 5 8. Muller's Gibbon (Hylobates mueller); 9. Abbott's Gray Gibbon (Hylobates abbotti); 10. East Bornean Gray Gibbon. Kloss's Gibbon (Hylobates klossil); 6. Lar Gibbon (Hylobates lan; 7. Moloch Gibbon (Hylobates moloch); (Hylobates funereus); 11. Pileated Gibbon (Hylobates pileatus). in Hylobatidae
On following pages: 3. Agile Gibbon (Hylobates agilis); 4. Bornean White-bearded Gibbon (Hylobates albibarbis); 5 8. Muller's Gibbon (Hylobates mueller); 9. Abbott's Gray Gibbon (Hylobates abbotti); 10. East Bornean Gray Gibbon. Kloss's Gibbon (Hylobates klossil); 6. Lar Gibbon (Hylobates lan; 7. Moloch Gibbon (Hylobates moloch); (Hylobates funereus); 11. Pileated Gibbon (Hylobates pileatus).
Distribution. Bangladesh and NE India (states of Assam, Arunachal Pradesh, Nagaland, Meghalaya, Manipur, Mizoram, and Tripura) between the Brahmaputra and Salween rivers, and to the S of the Brahmaputra and E of the Dibang rivers, extending into NW Myanmar, W of the Chindwin River. W. Bleisch has reported an isolated population of gibbons to the N, in the Medog Nature Reserve in SE Xizang Autonomous Region (= Tibet), across the border from Arunachal Pradesh, but their identity has not been established. in Hylobatidae
Distribution. Bangladesh and NE India (states of Assam, Arunachal Pradesh, Nagaland, Meghalaya, Manipur, Mizoram, and Tripura) between the Brahmaputra and Salween rivers, and to the S of the Brahmaputra and E of the Dibang rivers, extending into NW Myanmar, W of the Chindwin River. W. Bleisch has reported an isolated population of gibbons to the N, in the Medog Nature Reserve in SE Xizang Autonomous Region (= Tibet), across the border from Arunachal Pradesh, but their identity has not been established.
FIGURE 1 in Validation of Tethya samaaii Ribeiro & Muricy, 2011, replacement name for the sponge Tethya rubra Samaai & Gibbons, 2005 (Demospongiae, Tethyida, Tethyidae)
FIGURE 1. In situ photographs of (A) Tethya samaaii from Oudekraal, South Africa and (B) Tethya rubra from Abrolhos Archipelago, Brazil.
Supplementary material 1 from: Zhang Z, Zang R (2018) Diversity and distribution of food plants: Implications for conservation of the critically endangered Hainan gibbon. Nature Conservation 31: 17-33. https://doi.org/10.3897/natureconservation.31.27407
Table S1 : Explanation note: Species list, abundances and characteristics of food woody plant species for Hainan gibbon sampled in young natural secondary forests (YSF, < 25 yr since disturbance), middle-aged natural secondary forests (MSF, 25–60 yr since disturbance), old natural forests (OGF, > 60 yr since disturbance) and plantation forests (PF, 20–35 yr) of tropical forest area in BNNR, Hainan Island, China. Tot fts: total number of forest types in which the species occurs.
Supplementary material for: UAV-assisted counts of group size facilitate accurate population surveys of the Critically Endangered cao vit gibbon Nomascus nasutus
<p>Supplementary Material for the journal article "UAV-assisted counts of group size facilitate accurate population surveys of the Critically Endangered cao vit gibbon <em>Nomascus nasutus</em>", published in <em>Oryx</em>.</p> <p><strong>Caption: </strong>Video footage of cao vit gibbon <em>Nomascus nasutus</em> family groups taken with an unoccupied aerial vehicle (UAV). The footage from the thermal and RGB cameras on the UAV is shown side-by-side to facilitate comparison between the two sensor types. The video is also available at: www.youtube.com/watch?v=J7VpnvdUT4A.</p>
Data from: Inter-group variability in seed dispersal by white-handed gibbons in mosaic forest
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Data from: Assessing current genetic status of the Hainan gibbon using historical and demographic baselines: implications for conservation management of species of extreme rarity
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Unsupervised acoustic classification of individual gibbon females and the implications for passive acoustic monitoring
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Gibbon genome (Nleu3.0) custom gene annotation file
<p>Co-option of transposable elements (TEs) to become part of existing or new enhancers is an important mechanism for evolution of gene regulation. However, contributions of lineage-specific TE insertions to recent regulatory adaptations remain poorly understood. Gibbons present a suitable model to study these contributions as they have evolved a lineage-specific TE called <i>LAVA, </i>which is still active in the gibbon genome. The LAVA retrotransposon is thought to have played a role in the emergence of the highly rearranged structure of the gibbon genome by disrupting transcription of cell cycle genes. In this study, we investigated whether LAVA may have also contributed to the evolution of gene regulation by adopting enhancer function. We characterized fixed and polymorphic LAVA insertions across multiple gibbons and found 96 LAVA elements overlapping enhancer chromatin states. Moreover, LAVA was enriched in multiple transcription factor binding motifs, was bound by an important transcription factor (PU.1), and was associated with higher levels of gene expression in <i>cis</i>. We found gibbon-specific signatures of purifying/positive selection at 27 LAVA insertions. Two of these insertions were fixed in the gibbon lineage and overlapped with enhancer chromatin states, representing putative co-opted LAVA enhancers. These putative enhancers were located within genes encoding SETD2 and RAD9A,<i> </i>two proteins that facilitate accurate repair of DNA double-strand breaks and prevent chromosomal rearrangement mutations. Co-option of LAVA in these genes may have influenced regulation of processes that preserve genome integrity. Our findings highlight the importance of considering lineage-specific TEs in studying evolution of novel gene regulatory elements.</p>
Automated detection of Hainan gibbon calls for passive acoustic monitoring
<p>Data accompanying the paper: "Automated detection of Hainan gibbon calls for passive acoustic monitoring"</p> <p><strong>Please cite this dataset as:</strong></p> <blockquote> <p>Dufourq, Emmanuel and Durbach, Ian and Hansford, James and Hoepfner, Amanda and Ma, Heidi and Bryant, Jessica and Stender, Christina and Li, Wenyong and Liu, Zhiwei and Chen, Qing and Zhou, Zhaoli and Turvey, Samuel. (2020). Automated detection of Hainan gibbon calls for passive acoustic monitoring. BioRxiv doi: https://doi.org/10.1101/2020.09.07.285502</p> </blockquote> <p>The Hainan gibbon is the world's rarest primate and one of the world's rarest mammals, with only a single population of about 30 individuals surviving in Bawangling National Nature Reserve (BNNR), Hainan, China. Eight Song Meter SM3 recorders (Wildlife Acoustics, Maynard, Massachusetts) were used to collect acoustic data from 1 March to 20 August 2016 within BNNR. Recorders were attached to trees at approximately 1.5 meters from the ground in tropical evergreen forest. Recorders were set to record for eight hours each day from the time of sunrise, which varied between approximately 05:00 and 06:00 during the study period. Devices did not record continuously throughout the entire survey period due to logistical and technical issues; in total, survey days per recorder varied between 79 and 129 days, and roughly 6,000 hours of recordings were collected. The majority of recordings were made with a sampling rate of 9,600Hz and bit depth of 16, with isolated recordings at 28,800Hz.</p> <p>We provide the audio data (.wav) used to train and test our neural network classifier along with the corresponding labelled text files (.data).</p> <p><strong>Files provided</strong></p> <p>Train.zip - contains the training .wav audio files</p> <p>Train_Labels.zip - contains the labels for the training data</p> <p>Test.zip - contains the testing .wav audio files</p> <p>Test_Labels.zip - contains the labels for the test data</p> <p>Extra_Labelled_Data.zip - contains extra data that was labelled and non-gibbon calls used for training</p> <p>Extra_Labels.zip - contains the labels for the extra labelled data</p> <p>Unlabelled_Data.zip - contains additional .wav audio files which have not been labelled. These are split into various files (1-15) and can be downloaded individually.</p> <p>Code.zip - contains all the software scripts and notebooks</p> <p>Manual-zip - contains the user manual</p> <p><strong>Labels</strong></p> <p>The names of the labelled files start with either "g_" or "n_", for example "g_HGSM3D_0+1_20160429_051600.data" and "n_HGSM3D_0+1_20160429_051600.data". Files starting with "g_" contain the timestamps of the gibbon calls, and files starting with "n_" contain the timestamps of non-gibbon calls (e.g. background noise and bird calls). An audio file will have both a "g_" and "n_" file. Each file has the following format: Start,End,Duration,Type,Notes, where "start" denotes the start time in seconds, "end" denotes the end time in seconds, "duration" denotes the duration (end - start) in seconds, "type" denotes the type of call/noise and "notes" are additional notes which we labelled.</p> <p><strong>Types</strong></p> <p>The legend for the "type" column in the labelled files is defined as follows. The types for gibbon and non-gibbon files are different and we distinguish this below.</p> <p> </p> <p>Gibbon files ("g_")</p> <p>type 1 = one pulse gibbon call</p> <p>type 2 = multiple pulse gibbon call (check "notes column" below)</p> <p>type 3 = duet gibbon call</p> <p> </p> <p><em>Notes column (only available in gibbon files)</em></p> <p>One of the following: 2 pulse call, 3 pulse call, 4 pulse call, 5 pulse call or 6 pulse call.</p> <p> </p> <p>Non-gibbon files ("n_")</p> <p>type 1 = rain</p> <p>type 2 = other species (e.g. birds)</p> <p>type 3 = rain and other species</p> <p>type 4 = rain and external noise (e.g. aircraft)</p> <p>type 5 = natural sounds and external noise</p> <p>type 6 = natural sounds and other species</p> <p><strong>Training files (containing gibbon calls):</strong></p> <p>HGSM3AC_0+1_20160309_055600<br> HGSM3AC_0+1_20160312_055400<br> HGSM3A_0+1_20160304_060000<br> HGSM3BD_0+1_20160305_060000<br> HGSM3AC_0+1_20160314_055200<br> HGSM3B_0+1_20150616_050500<br> HGSM3BD_0+1_20160402_053600<br> HGSM3D_0+1_20160429_051600<br> HGSM3B_0+1_20160305_060000<br> HGSM3C_0+1_20160501_051500<br> HGSM3SOL_0+1_20160320_054700<br> HGSM3SOL_0+1_20160405_053400<br> HGSM3BD_0+1_20160401_053700</p> <p><strong>Testing files:</strong></p> <p>HGSM3B_0+1_20160323_054500<br> HGSM3B_0+1_20160321_054700<br> HGSM3B_0+1_20160306_055900<br> HGSM3B_0+1_20160308_055700<br> HGSM3B_0+1_20160309_055600<br> HGSM3B_0+1_20160316_055100<br> HGSM3B_0+1_20160311_055500<br> HGSM3B_0+1_20160304_060000<br> HGSM3B_0+1_20160322_054600</p>
FIGURE 5 Lower p4 in Description of a new species of Hoolock gibbon (Primates: Hylobatidae) based on integrative taxonomy
FIGURE 5 Lower p4 of different hoolock species and geographic populations
Figure 2 from: Gani M, Rovie-Ryan JJ, Sitam FT, Kulaimi NAM, Zheng CC, Atiqah AN, Rahim NMA, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programmes. ZooKeys 1076: 25-41. https://doi.org/10.3897/zookeys.1076.73262
Figure 2 Phylogenetic relationships among the Hylobates species as represented by the NJ analysis. ML (Log Likelihood= -4326.23) and BI analysis produced similar topologies. Numbers above/below the branches represents bootstrap values for NJ, ML, and BI posterior probability, respectively. Only bootstrap values greater than 50% are shown.
Supplementary material 3 from: Gani M, Rovie-Ryan JJ, Sitam FT, Kulaimi NAM, Zheng CC, Atiqah AN, Rahim NMA, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programmes. ZooKeys 1076: 25-41. https://doi.org/10.3897/zookeys.1076.73262
Table S3
Figure 1 from: Gani M, Rovie-Ryan JJ, Sitam FT, Kulaimi NAM, Zheng CC, Atiqah AN, Rahim NMA, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programmes. ZooKeys 1076: 25-41. https://doi.org/10.3897/zookeys.1076.73262
Figure 1 Geographical distribution of Hylobates lar subspecies throughout South-East Asia (adapted from Thinh et al. 2010; Brockelman and Geissmann, 2020). Black squares represent individuals of known exact locations while blue squares indicated the approximate locations of the confiscated and surrendered individuals used in this study. Numbers on the map corresponds to the location in Table 1. The approximate location of the Isthmus of Kra, the Surat Thani-Krabi depression, and the Kangar-Pattani line are indicated by the grey, red, and green lines, respectively, marking the possible break among the Indochinese (carpenteri, entelloides, and yunnannesis) from the lar subspecies.
Supplementary material 2 from: Gani M, Rovie-Ryan JJ, Sitam FT, Kulaimi NAM, Zheng CC, Atiqah AN, Rahim NMA, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programmes. ZooKeys 1076: 25-41. https://doi.org/10.3897/zookeys.1076.73262
Table S2
Supplementary material 1 from: Gani M, Rovie-Ryan JJ, Sitam FT, Kulaimi NAM, Zheng CC, Atiqah AN, Rahim NMA, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programmes. ZooKeys 1076: 25-41. https://doi.org/10.3897/zookeys.1076.73262
Table S1.
Figure 3 from: Gani M, Rovie-Ryan JJ, Sitam FT, Kulaimi NAM, Zheng CC, Atiqah AN, Rahim NMA, Mohammed AA (2021) Taxonomic and genetic assessment of captive White-Handed Gibbons (Hylobates lar) in Peninsular Malaysia with implications towards conservation translocation and reintroduction programmes. ZooKeys 1076: 25-41. https://doi.org/10.3897/zookeys.1076.73262
Figure 3 Median-joining network (MJN) constructed showing the relationships among the H. lar haplotypes. Each circle size is proportional to the number of individuals in each haplotype. The numbers next to the nodes correspond to the haplotype designation as listed in Supplementary Material, Table S1. The lines connecting the haplotypes represent single mutations unless indicated otherwise (numbers in parentheses). Hypothetical haplotypes (median vectors) are represented by white circles.
Supplementary material 2 from: Rodriguez-Cabal MA, Gibbons TC, PM, Barrios-Garcia MN, Crutsinger GM (2015) Comparing functional similarity between a native and an alien slug in temperate rain forests of British Columbia. NeoBiota 25: 1-14. https://doi.org/10.3897/neobiota.25.8316
Alien black slug: Explanation note: Alien black slug eating a mushroom in the forest.
Supplementary material 1 from: Rodriguez-Cabal MA, Gibbons TC, PM, Barrios-Garcia MN, Crutsinger GM (2015) Comparing functional similarity between a native and an alien slug in temperate rain forests of British Columbia. NeoBiota 25: 1-14. https://doi.org/10.3897/neobiota.25.8316
Mesocosm: Explanation note: Detail of the mesocosm
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