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70 results for “haplotype network”
Fig. 8 Haplotype network for 44 in New insights into the phylogeny and taxonomy of Chinese species of Gagea (Liliaceae)-speciation through hybridization
Fig. 8 Haplotype network for 44 cpDNA haplotypes (psbA-trnH IGS+trnL-trnF IGS) including 38 sequences of representatives of Gagea sect. Gagea: G. aipetriensis (aip), G. ancestralis, G. angelae (ang), G. artemczukii (art), G. capusii (cap), G. erubescens (eru), G. helenae (hel), G. huochengensis (huo), G. lutea (lut), G. nakaiana (nak), G. paczoskii (pac), G. podolica (pod), G. pomeranica (pom), G. pratensis (pra), G. pusilla (pus), G. rubicunda (rub), G. shmakoviana (shm), G. terraccianoana (ter), G. tisoniana (tis), G.
Fig. 4 Haplotype networks for ITS2 in Cryptic species of Notophyllum (Polychaeta: Phyllodocidae) in Scandinavian waters
Fig. 4 Haplotype networks for ITS2. (A, B) Notophyllum foliosum. (C, D) N. crypticum n. sp. For further explanations, see Figure 3 10 4 5 3 8 9 B T 6 7 2 T 1 B
Fig. 3 Haplotypic networks for the studied histone H1 in Estimating range disjunction time of the Palearctic Admirals (Limenitis L.) with COI and histone H1 genes
Fig. 3 Haplotypic networks for the studied histone H1 gene (a–c) and COI fragment (d) of L. camilla (a–b) and L. helmanni (c–d) from the eastern and western parts of their ranges; b shows representation of combinations of histone H1 gene haplotypic variants in individuals of L. camilla
Fig. 9 Single gene trees and haplotype networks. a, b in Two new bioluminescent Henlea from Siberia and lack of molecular support for Hepatogaster (Annelida, Clitellata, Enchytraeidae)
Fig. 9 Single gene trees and haplotype networks. a, b Gene-trees (a COI, b H3) estimated with Bayesian coalescent analysis in BEAST. Numbers above branches are posterior probabilities. Scales show expected numbers of substitution per site. The specimen shaded in red has a conflict between morphology and COI data. c, d Statistical parsimony
FIGURE 3. Haplotypes network from rpl32 in Molecular and cytogenetic confirmation of the hybrid origin of Jacobaea ×mirabilis (Asteraceae, Senecioneae), with nomenclatural notes on this name
FIGURE 3. Haplotypes network from rpl32-trnL region in Jacobaea. Each circle corresponds to a haplotype and circles' size is proportional to haplotype frequency (from n=1 to n=5). Small white circles represent single mutational steps.
FIGURE 3. TCS haplotype network obtained for 521 in Mitochondrial DNA-based reassessment of Antennablennius Fowler (Blenniidae: Salariini) from the north-western Indian Ocean, with resurrection of A. persicus (Regan)
FIGURE 3. TCS haplotype network obtained for 521 bp fragment of mitochondrial COI of the genus Antennablennius. Numbers between haplotypes represent mutational steps between them.
FIGURE 3. Haplotype network showing relationships among ITS haplotypes between Lepra amaroides, L. pseudosubventosa and L. subventosa s in New species and records of lichens from Bolivia
FIGURE 3. Haplotype network showing relationships among ITS haplotypes between Lepra amaroides, L. pseudosubventosa and L. subventosa s.str. Sizes of circles are proportional to the number of specimens per haplotype. Chemotypes are described below specimen's data. Numbers in brackets near lines between haplotypes represent number of mutational steps.
FIGURE 4. TCS haplotype network inferred from ITS-2 in The polyphasic approach revealed new species of Chloroidium (Trebouxiophyceae, Chlorophyta)
FIGURE 4. TCS haplotype network inferred from ITS-2 rDNA sequences of Chloroidium saccharophilum. This network was inferred using the algorithm described by Clement et al. (2002). Sequence nodes corresponding to samples collected from different geographical region and from different habitats.
FIGURE 5. TCS haplotype network inferred from ITS-2 in The polyphasic approach revealed new species of Chloroidium (Trebouxiophyceae, Chlorophyta)
FIGURE 5. TCS haplotype network inferred from ITS-2 rDNA sequences of Chloroidium ellipsoideum and C. lichenum. This network was inferred using the algorithm described by Clement et al. (2002). Sequence nodes corresponding to samples collected from different geographical region and from different habitats.
FIGURE 3. Statistical parsimony haplotype network constructed from 621 in Description of two new species of Rhamphus related to R. oxyacanthae (Curculionidae, Curculioninae, Rhamphini) from Italy based on a morphological study supported by molecular data
FIGURE 3. Statistical parsimony haplotype network constructed from 621 bp of the mtCOI gene of Rhamphus bavierai n. sp. (GenBank accession number MW879286- MW879303). Circle sizes are proportional to haplotype frequency (for details see supplementary Table S1). Numbers in brackets above/beside the solid broken line represent the number of mutations connecting mitochondrial lineages.
FIGURE 2. Statistical parsimony haplotype network constructed from 621 in Description of two new species of Rhamphus related to R. oxyacanthae (Curculionidae, Curculioninae, Rhamphini) from Italy based on a morphological study supported by molecular data
FIGURE 2. Statistical parsimony haplotype network constructed from 621 bp of the mtCOI gene of Rhamphus oxyacanthae in Italy (GenBank accession number MW879276- MW879285). Circles sizes are proportional to haplotype frequency (for details see supplementary S1).
Figure 1. Haplotype network derived from 704 in Repeated sampling adds to the genetic diversity of Lepidochelys olivacea (Eschscholtz 1829) olive ridley sea turtle
Figure 1. Haplotype network derived from 704 bp mitochondrial D-loop fragment. Circle sizes are proportional to the frequency of each haplotype. The black circles are hypothetical haplotypes not sampled. Each colour represents the ocean basin where the sample was taken: blue is Pacific Ocean, yellow is Indian Ocean, red is Atlantic Ocean, and green is Indo-Pacific Ocean.
Figure 5. Minimum spanning haplotype network derived from a 658 base-pair cytochrome c oxidase subunit I in Six degrees of separation in barnacles? Assessing genetic variability in the sea-turtle epibiont Stomatolepas elegans (Costa) among turtles, beaches and oceans
Figure 5. Minimum spanning haplotype network derived from a 658 base-pair cytochrome c oxidase subunit I (COI) fragment from 57 Stomatolepas elegans collected from nine different Lepidochelys olivacea nesting on Playa Teopa, Jalisco, Mexico, six S. elegans from Caretta caretta from the western Atlantic, and six S. praegustator from C. caretta from the western Atlantic. Circle sizes are proportional to the frequency of each haplotype, with haplotype 1 being most common. Coloured pie slices are also proportional, and represent the number of S. elegans from each turtle characterized by the respective haplotype. Colours represent the nine Mexican turtles randomly sampled for S. elegans populations. Open circles with numbers indicate Atlantic haplotypes. Solid black circles designate hypothetical missing haplotypes. The network includes S. elegans haplotypes 1–21, and S. praegustator haplotypes 19, 26–30. Haplotypes 1–17, shown in colour, represent Jalisco, Mexico specimens collected from nine different turtles in the Pacific, and haplotypes 18–21 and 26–30, shown as unshaded circles, represent southeastern United States Atlantic specimens collected from six different C. caretta (see Table 1).
Figure 3. Haplotype networks for cytochrome oxidase I in Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea: Bythinellidae) in Romania: species richness in a glacial refugium
Figure 3. Haplotype networks for cytochrome oxidase I (COI), computed with TCS 1.21; square and ellipse size reflects haplotype frequency; connection limit excluding homoplastic changes was set to 95% (hence excluding some haplotypes from network); haplotypes in squares have biggest outgroup weights.
FIGURE 3. Haplotype network for the 800 in Genetic evaluation of the Baja California rock squirrel Otospermophilus atricapillus (Rodentia: Sciuridae)
FIGURE 3. Haplotype network for the 800-bp Cyt b data set includes populations from California and the Baja California Peninsula. Each perpendicular hash mark across the line between adjacent haplotypes in the network represents a single-base substitution. The circle size is directly proportional to the number of specimens per haplotype; the key to the haplotype (Table 1) is adjacent to each circle; some haplotypes are present in more than one population. The clades are in boxes; Clade A (Southern Clade, lowlands across California and Baja California Peninsula); Clade B (Northern Clade, El Dorado Natural Forest); and Clade C (Central Clade, California highlands in Yosemite). Color for the haplotype circles are based on subspecies designation (see material and methods from subspecies allocation. Solid circle = O. b. atricapillus, dark gray circle O. b. beecheyi, light gray circle O. b. douglasii, open circle = O. b. fisheri, solid ellipse = O. b. nudipes, dark gray ellipse = O. b. parvulus, light gray ellipse = O. b. rupinarum, and open ellipse = O. b. sierrae.
FIGURE 2. Minimum spanning haplotype networks for all S in Review of the systematic status of Sceloporus arenicolus Degenhardt and Jones, 1972 with an estimate of divergence time
FIGURE 2. Minimum spanning haplotype networks for all S. graciosus group samples sequenced at each of three nuclear loci. Size of each circle corresponds to the frequency of that haplotype. Shading corresponds to clade membership in Figure 3.
Figure 10. Haplotype parsimonious networks constructed from cytochrome c oxidase subunit I in A new genus of large hydrothermal vent-endemic gastropod (Neomphalina: Peltospiridae)
Figure 10. Haplotype parsimonious networks constructed from cytochrome c oxidase subunit I sequences of 30 specimens of: A, Gigantopelta chessoia sp. nov.; B, Gigantopelta aegis sp. nov. Open circles are represented haplotypes, number inside the circles and sizes of the circles correspond to number of individuals sharing the haplotype. Filled circles are hypothesized intermediate haplotypes that are not represented by sequences.
Figure 5. The haplotype minimum spanning network using 612 in Phylogeny of the order Phoenicopteriformes and population genetics of the Caribbean flamingo (Phoenicopterus ruber: Aves)
Figure 5. The haplotype minimum spanning network using 612 bp of the cytochrome b gene to compare colonies of Caribbean flamingos from Cuba (N = 49), Bonaire (N = 38) and Galápagos (N = 35).
FIG. 4. Haplotype network for the mitochondrial genes cytochrome b in Phylogeography of the Chocó Endemic Rainbow Characin (Teleostei: Rhoadsia)
FIG. 4. Haplotype network for the mitochondrial genes cytochrome b (Cyt-b, top) and cytochrome oxidase I (COI, bottom) color coded by site. The size of the circles is proportional to the haplotype frequency. The number of mutations between the haplotypes are represented by hatch marks. The populations within drainages are represented by different color shades (see legend). Haplotypes fall into two groups: the northern (N, enclosed by blue dashed line) and the southern group (S, enclosed by red dashed line).
Figure 2. Haplotype median joining network estimated from dataset 1, comprising 76 in Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae)
Figure 2. Haplotype median joining network estimated from dataset 1, comprising 76 samples of partial cytochrome b (402 bp).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.