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95
datasets available to search
ShareScore release 0.9.0
Dataset results
95 results for “host-pathogen”
Data from: Temporal dynamics of outcrossing and host mortality rates in host-pathogen experimental coevolution
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Data from: Evolutionary rescue in a host-pathogen system results in coexistence not clearance
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Data from: Integrated molecular imaging reveals tissue heterogeneity driving host-pathogen interactions
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['Evaluating the effect of spaceflight on the host-pathogen interaction between human intestinal epithelial cells and Salmonella Typhimurium']
['Spaceflight uniquely alters the physiology of both human cells and microbial pathogens, stimulating cellular and molecular changes directly relevant to infectious disease. However, the influence of this environment on host-pathogen interactions remains poorly understood. Here we report our results from the STL-IMMUNE study flown aboard Space Shuttle mission STS-131, which investigated multi-omic responses (transcriptomic, proteomic) of human intestinal epithelial cells to infection with Salmonella Typhimurium when both host and pathogen were simultaneously exposed to spaceflight. To our knowledge, this was the first in-flight infection and dual RNA-seq analysis using human cells. Additionally, it is the first global transcriptomic and proteomic profiling of human intestinal epithelial cultures during spaceflight (either infected or uninfected).']
An in vivo atlas of host-pathogen transcriptomes during Streptococcus pneumoniae colonization and disease
GEO Series GSE150788. Mus musculus; Streptococcus pneumoniae. 44 samples. Type: Expression profiling by high throughput sequencing.
Diet driven differences in host tolerance are linked to shifts in global gene expression in a common avian host-pathogen system
GEO Series GSE273665. Serinus canaria. 105 samples. Type: Expression profiling by high throughput sequencing.
A next generation three-dimensional hydrogel-based culture system for studying host-pathogen interaction and drug efficacy in tuberculosis
GEO Series GSE216503. Homo sapiens; Mycobacterium tuberculosis H37Rv. 11 samples. Type: Expression profiling by high throughput sequencing.
Evaluating the effect of spaceflight on the host-pathogen interaction between human intestinal epithelial cells and Salmonella Typhimurium
GEO Series GSE156066. Salmonella enterica subsp. enterica serovar Typhimurium; Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Host-pathogen interaction of Atlantic salmon (Salmo salar) and the ectoparasite, Neoparamoeba perurans in amoebic gill disease
GEO Series GSE166760. Paramoeba perurans; Salmo salar. 33 samples. Type: Expression profiling by high throughput sequencing.
Revealing parallel host-pathogen transcriptional dynamics using sorted subpopulations and single, Candida albicans infected macrophages
GEO Series GSE111731. Candida albicans; Mus musculus. 306 samples. Type: Expression profiling by high throughput sequencing.
Dynamic host-pathogen interactions in pathogen-challenged chicken embryo fibroblasts cells with Marek’s Disease Virus using 3’ end enriched RNA-seq
GEO Series GSE92567. Gallus. 10 samples. Type: Expression profiling by high throughput sequencing.
Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (VISIUM)
GEO Series GSE268068. Plasmodium berghei ANKA; Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
CRISPR-cas cas7 influences the host-pathogen interaction of Porphyromonas gingivalis
GEO Series GSE300980. Porphyromonas gingivalis. 12 samples. Type: Expression profiling by high throughput sequencing.
Host-pathogen transcriptomics of Mucor circinelloides spores phagocytosed by mouse macrophages
GEO Series GSE117385. Mus musculus; Mucor lusitanicus. 24 samples. Type: Expression profiling by high throughput sequencing.
Global Analysis of the Transcriptional Response of Whitefly to Entomopathogenic Fungi Beauveria bassiana Reveals New Insights on Host-Pathogen Interactions
GEO Series GSE38108. Bemisia tabaci. 3 samples. Type: Expression profiling by high throughput sequencing.
The transcription and translation landscapes during human cytomegalovirus infection reveal novel host-pathogen interactions
GEO Series GSE69906. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Other.
Dual host-pathogen RNA-sequencing of R. canadensis infected Vero cells in response to various compound treatments
GEO Series GSE191095. Rickettsia canadensis; Chlorocebus sabaeus. 16 samples. Type: Expression profiling by high throughput sequencing.
Dissecting the immunogenicity of RD1-recombinant live tuberculosis vaccine candidates studying host-pathogen interaction in human primary dendritic cells
GEO Series GSE62423. Homo sapiens. 24 samples. Type: Expression profiling by array.
Dual Host-Pathogen RNA-Seq Aphanius dispar and Candida auris Yolk Sac Microinjection
GEO Series GSE277854. blank sample; Candidozyma auris; Aphanius dispar. 57 samples. Type: Expression profiling by high throughput sequencing.
Combined transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions [mouse tissues 8 h]
GEO Series GSE83681. Mus musculus. 9 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.